Wall clock time and date at job start Mon Mar 30 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 119.99886 * 2 1 4 4 C 1.38243 * 120.00069 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99602 * 0.09581 * 4 3 2 6 6 C 1.50701 * 119.99808 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.81972 * 89.29750 * 6 5 4 8 8 C 1.54378 * 109.83351 * 210.18627 * 6 5 4 9 9 C 1.55444 * 102.18920 * 140.81802 * 8 6 5 10 10 C 1.54956 * 100.98951 * 325.96165 * 9 8 6 11 11 H 1.08998 * 110.30798 * 277.47584 * 10 9 8 12 12 C 1.50699 * 110.39400 * 155.34985 * 10 9 8 13 13 H 1.08006 * 119.99880 * 2.78571 * 12 10 9 14 14 C 1.37878 * 119.99899 * 182.78381 * 12 10 9 15 15 N 1.31512 * 119.99830 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99758 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47249 * 60.00236 * 16 14 12 18 18 H 1.48499 * 109.46810 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47249 * 300.00076 * 16 14 12 20 20 O 1.43237 * 109.82899 * 328.41450 * 6 5 4 21 21 C 1.38230 * 120.00326 * 359.97438 * 5 4 3 22 22 C 1.38234 * 120.00242 * 180.08946 * 2 1 3 23 23 H 1.08997 * 109.47341 * 269.91120 * 1 2 3 24 24 H 1.09007 * 109.47270 * 29.90821 * 1 2 3 25 25 H 1.09000 * 109.46792 * 149.90515 * 1 2 3 26 26 H 1.08001 * 120.00365 * 0.06714 * 3 2 1 27 27 H 1.08000 * 119.99728 * 180.36512 * 4 3 2 28 28 H 1.09002 * 109.47007 * 60.70586 * 7 6 5 29 29 H 1.09004 * 109.46821 * 180.69941 * 7 6 5 30 30 H 1.08996 * 109.47275 * 300.69640 * 7 6 5 31 31 H 1.08999 * 110.84934 * 259.06233 * 8 6 5 32 32 H 1.09002 * 110.84790 * 22.68163 * 8 6 5 33 33 H 1.08995 * 111.15129 * 208.01099 * 9 8 6 34 34 H 1.08998 * 111.09726 * 83.88991 * 9 8 6 35 35 H 0.96999 * 119.99379 * 179.97438 * 15 14 12 36 36 H 1.08001 * 120.00371 * 179.97438 * 21 5 4 37 37 H 1.08000 * 119.99729 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0000 -0.0009 6 6 5.7787 0.0000 -0.0009 7 6 6.2975 0.0159 1.4384 8 6 6.3025 -1.2544 -0.7327 9 6 7.5217 -0.6922 -1.5160 10 6 7.0234 0.7358 -1.8530 11 1 6.3889 0.7159 -2.7389 12 6 8.1921 1.6626 -2.0684 13 1 9.2008 1.2793 -2.0228 14 6 7.9735 2.9998 -2.3238 15 7 6.7452 3.4665 -2.3788 16 14 9.4221 4.1484 -2.5915 17 1 10.2123 3.6846 -3.7601 18 1 8.9229 5.5237 -2.8454 19 1 10.2827 4.1503 -1.3814 20 8 6.2646 1.1487 -0.7053 21 6 3.5806 -1.1971 -0.0024 22 6 2.1982 -1.1971 -0.0019 23 1 -0.3634 -0.0016 1.0276 24 1 -0.3634 0.8908 -0.5124 25 1 -0.3633 -0.8891 -0.5153 26 1 1.6582 2.1325 0.0011 27 1 4.1205 2.1325 0.0065 28 1 5.9476 -0.8747 1.9605 29 1 7.3874 0.0284 1.4316 30 1 5.9272 0.9052 1.9483 31 1 6.6159 -2.0169 -0.0196 32 1 5.5500 -1.6471 -1.4165 33 1 7.7060 -1.2681 -2.4229 34 1 8.4112 -0.6596 -0.8868 35 1 6.5915 4.4073 -2.5581 36 1 4.1205 -2.1325 -0.0040 37 1 1.6582 -2.1324 -0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309461786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:02 Heat of formation + Delta-G solvation = -51.374067 kcal Electronic energy + Delta-G solvation = -18038.831405 eV Core-core repulsion = 15358.631039 eV Total energy + Delta-G solvation = -2680.200366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.03899 -39.26009 -35.19960 -33.93469 -32.80634 -31.57869 -31.55030 -28.38461 -27.53813 -25.14783 -23.60274 -22.76237 -21.84525 -20.56433 -18.60888 -17.69683 -16.79847 -16.59438 -15.95207 -15.81065 -15.47018 -14.77655 -14.55237 -14.33326 -14.14596 -14.00692 -13.64616 -13.50666 -13.17317 -12.95995 -12.77762 -12.65770 -12.42747 -12.38087 -12.19817 -12.04295 -11.77856 -11.38577 -11.34889 -10.96644 -10.68924 -9.85767 -9.73982 -9.30894 -8.13430 -6.34650 0.49844 0.58168 1.39180 1.42427 1.49803 2.40480 2.90563 3.04560 3.52364 3.78710 3.99249 4.07650 4.11459 4.16356 4.24854 4.44164 4.56386 4.62654 4.66313 4.71906 4.81483 4.88254 4.93017 4.95852 4.99490 5.07303 5.13329 5.14989 5.26079 5.33120 5.41070 5.57064 5.64977 5.75046 5.76992 5.87628 6.19446 6.22066 6.62964 7.11033 7.41730 8.93942 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028965 B = 0.006588 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.445797 B = 4248.884386 C = 4825.500399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C -0.136 4.136 4 C -0.114 4.114 5 C -0.101 4.101 6 C 0.116 3.884 7 C -0.133 4.133 8 C -0.132 4.132 9 C -0.139 4.139 10 C 0.204 3.796 11 H -0.018 1.018 12 C -0.556 4.556 13 H 0.066 0.934 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.961 3.039 17 H -0.263 1.263 18 H -0.284 1.284 19 H -0.270 1.270 20 O -0.376 6.376 21 C -0.117 4.117 22 C -0.125 4.125 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.260 0.740 36 H 0.143 0.857 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 -10.525 6.144 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.099 4.099 3 C -0.154 4.154 4 C -0.132 4.132 5 C -0.101 4.101 6 C 0.076 3.924 7 C -0.190 4.190 8 C -0.169 4.169 9 C -0.177 4.177 10 C 0.149 3.851 11 H 0.000 1.000 12 C -0.593 4.593 13 H 0.084 0.916 14 C -0.180 4.180 15 N -0.538 5.538 16 Si 0.785 3.215 17 H -0.188 1.188 18 H -0.210 1.210 19 H -0.195 1.195 20 O -0.296 6.296 21 C -0.134 4.134 22 C -0.143 4.143 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.143 0.857 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.161 0.839 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.046 -10.163 6.172 14.940 hybrid contribution 0.879 1.181 -0.431 1.534 sum -8.167 -8.982 5.741 13.429 Atomic orbital electron populations 1.20796 0.88842 1.03514 1.03160 1.20267 0.97701 0.92584 0.99345 1.21192 0.93287 0.98868 1.02043 1.21001 0.94820 0.97933 0.99434 1.20357 0.95563 0.93949 1.00226 1.21057 0.89451 0.88003 0.93871 1.21938 1.00905 1.01877 0.94287 1.23208 0.97349 0.96874 0.99460 1.23219 0.98033 0.96283 1.00130 1.20340 0.88995 0.91445 0.84345 1.00037 1.21513 0.92864 0.94727 1.50225 0.91619 1.25964 0.98259 1.00131 0.93597 1.70200 1.21664 1.14452 1.47498 0.85598 0.79330 0.77518 0.79063 1.18809 1.20982 1.19466 1.88764 1.70766 1.28910 1.41148 1.21237 0.94832 0.97143 1.00220 1.21318 0.93630 0.98465 1.00884 0.90019 0.91477 0.90032 0.85662 0.89161 0.89560 0.92611 0.94102 0.87852 0.90685 0.90580 0.91375 0.93160 0.83937 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 10.01 71.24 0.71 -1.27 16 2 C -0.10 -2.69 5.88 -19.87 -0.12 -2.81 16 3 C -0.14 -4.56 9.70 22.27 0.22 -4.34 16 4 C -0.11 -4.69 9.36 22.27 0.21 -4.48 16 5 C -0.10 -3.85 4.82 -19.87 -0.10 -3.95 16 6 C 0.12 4.75 1.08 -11.07 -0.01 4.74 16 7 C -0.13 -4.73 8.71 71.98 0.63 -4.11 16 8 C -0.13 -4.56 5.05 31.90 0.16 -4.40 16 9 C -0.14 -5.76 6.54 32.10 0.21 -5.55 16 10 C 0.20 11.10 3.27 30.52 0.10 11.20 16 11 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 12 C -0.56 -32.35 8.81 25.60 0.23 -32.12 16 13 H 0.07 3.64 7.77 -2.91 -0.02 3.62 16 14 C 0.02 1.32 5.42 84.66 0.46 1.78 16 15 N -0.90 -56.31 12.93 21.45 0.28 -56.03 16 16 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 17 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 O -0.38 -20.32 8.94 -148.98 -1.33 -21.66 16 21 C -0.12 -3.49 8.75 22.27 0.19 -3.30 16 22 C -0.13 -3.24 9.70 22.27 0.22 -3.02 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 25 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 26 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 27 H 0.09 4.39 7.55 -2.91 -0.02 4.37 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 2.79 7.82 -2.39 -0.02 2.78 16 32 H 0.07 2.48 6.86 -2.39 -0.02 2.46 16 33 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.07 2.76 8.05 -2.39 -0.02 2.74 16 35 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.14 3.48 6.83 -2.91 -0.02 3.46 16 37 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -70.47 304.14 5.11 -65.36 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 1.03 Total: 16.78 kcal Atomic # 6 Polarization: -54.74 SS G_CDS: 3.11 Total: -51.64 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.28 Total: -56.03 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.33 Total: -21.66 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.47 5.11 -65.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.991 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds