Wall clock time and date at job start Mon Mar 30 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38246 * 120.00122 * 2 1 4 4 C 1.38222 * 120.00383 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99432 * 359.97438 * 4 3 2 6 6 C 1.38206 * 120.00261 * 359.95689 * 5 4 3 7 7 C 1.50703 * 120.00031 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.89423 * 90.52420 * 7 6 5 9 9 C 1.54380 * 109.82989 * 329.58852 * 7 6 5 10 10 C 1.55312 * 102.25056 * 219.13000 * 9 7 6 11 11 C 1.54951 * 100.94225 * 34.13333 * 10 9 7 12 12 H 1.08995 * 110.30511 * 82.46801 * 11 10 9 13 13 C 1.50696 * 110.39073 * 204.59450 * 11 10 9 14 14 H 1.08002 * 120.00141 * 357.22343 * 13 11 10 15 15 C 1.37878 * 119.99843 * 177.21402 * 13 11 10 16 16 N 1.31511 * 119.99899 * 179.97438 * 15 13 11 17 17 Si 1.86803 * 120.00054 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.46872 * 89.99471 * 17 15 13 19 19 H 1.48494 * 109.46944 * 209.99695 * 17 15 13 20 20 H 1.48503 * 109.46918 * 329.99822 * 17 15 13 21 21 O 1.43245 * 109.82902 * 211.45454 * 7 6 5 22 22 C 1.38221 * 119.99845 * 180.21111 * 2 1 3 23 23 H 1.08998 * 109.47447 * 89.99771 * 1 2 3 24 24 H 1.09008 * 109.47208 * 210.00211 * 1 2 3 25 25 H 1.09005 * 109.47086 * 329.99774 * 1 2 3 26 26 H 1.08001 * 120.00385 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.00647 * 179.97438 * 4 3 2 28 28 H 1.07994 * 119.99812 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.46749 * 179.47685 * 8 7 6 30 30 H 1.08993 * 109.46853 * 299.47763 * 8 7 6 31 31 H 1.08999 * 109.47510 * 59.48194 * 8 7 6 32 32 H 1.08999 * 110.84912 * 337.32025 * 9 7 6 33 33 H 1.08999 * 110.84558 * 100.93988 * 9 7 6 34 34 H 1.09000 * 111.12606 * 276.21364 * 10 9 7 35 35 H 1.09000 * 111.15931 * 152.06685 * 10 9 7 36 36 H 0.97007 * 119.99962 * 180.02562 * 16 15 13 37 37 H 1.07998 * 119.99752 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0009 7 6 4.3341 -2.5021 0.0015 8 6 4.5840 -2.9584 1.4404 9 6 5.6802 -2.3301 -0.7347 10 6 5.8026 -3.6677 -1.5145 11 6 4.3162 -3.9505 -1.8486 12 1 4.0149 -3.3921 -2.7347 13 6 4.0976 -5.4262 -2.0617 14 1 4.9339 -6.1081 -2.0165 15 6 2.8299 -5.9059 -2.3143 16 7 2.6392 -7.1937 -2.5009 17 14 1.3835 -4.7264 -2.3931 18 1 1.2110 -4.2471 -3.7880 19 1 0.1496 -5.4263 -1.9540 20 1 1.6401 -3.5682 -1.4998 21 8 3.5811 -3.4983 -0.7004 22 6 2.1980 -1.1970 -0.0044 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1325 -0.0010 28 1 5.3516 -0.0001 -0.0014 29 1 5.1209 -3.9070 1.4326 30 1 5.1790 -2.2083 1.9612 31 1 3.6300 -3.0851 1.9523 32 1 5.6420 -1.4835 -1.4202 33 1 6.4993 -2.2187 -0.0243 34 1 6.2200 -4.4530 -0.8842 35 1 6.3922 -3.5412 -2.4225 36 1 1.7473 -7.5311 -2.6790 37 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309478684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:03 Heat of formation + Delta-G solvation = -29.880094 kcal Electronic energy + Delta-G solvation = -18314.304836 eV Core-core repulsion = 15635.036518 eV Total energy + Delta-G solvation = -2679.268318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82560 -37.99183 -33.47953 -32.42817 -31.51739 -31.15999 -29.23380 -26.95711 -26.62390 -23.74849 -22.10404 -21.63284 -20.09257 -19.04478 -16.78980 -16.62537 -15.44300 -15.18215 -14.78696 -14.54932 -13.79031 -13.57765 -13.25146 -12.95902 -12.72677 -12.56401 -12.25316 -12.17665 -11.99054 -11.85557 -11.60589 -11.20285 -11.12001 -10.77928 -10.63827 -10.17993 -10.09041 -9.83271 -9.67310 -9.34871 -8.53427 -8.46826 -8.35281 -8.22154 -6.08415 -4.16405 1.59406 1.68567 3.40556 3.45680 3.69819 4.01087 4.55305 4.65234 4.96410 5.03996 5.16729 5.32560 5.35967 5.40204 5.45994 5.55802 5.68428 5.70970 5.80330 5.90608 5.96466 6.00315 6.09496 6.21487 6.29057 6.36157 6.41741 6.45427 6.50617 6.62293 6.68278 6.76564 6.89827 6.98253 7.26351 7.30107 7.64758 8.34513 8.45925 8.93181 9.56239 11.02052 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022173 B = 0.009354 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.498445 B = 2992.620145 C = 3870.452149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.072 4.072 7 C 0.133 3.867 8 C -0.140 4.140 9 C -0.146 4.146 10 C -0.134 4.134 11 C 0.173 3.827 12 H 0.025 0.975 13 C -0.522 4.522 14 H 0.077 0.923 15 C 0.084 3.916 16 N -0.894 5.894 17 Si 0.865 3.135 18 H -0.286 1.286 19 H -0.293 1.293 20 H -0.216 1.216 21 O -0.362 6.362 22 C -0.095 4.095 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.264 0.736 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 15.739 6.038 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.142 4.142 6 C -0.072 4.072 7 C 0.093 3.907 8 C -0.197 4.197 9 C -0.184 4.184 10 C -0.172 4.172 11 C 0.118 3.882 12 H 0.043 0.957 13 C -0.559 4.559 14 H 0.095 0.905 15 C -0.120 4.120 16 N -0.531 5.531 17 Si 0.691 3.309 18 H -0.213 1.213 19 H -0.219 1.219 20 H -0.139 1.139 21 O -0.283 6.283 22 C -0.113 4.113 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.638 15.527 6.068 16.683 hybrid contribution -0.602 0.496 -0.225 0.811 sum 0.036 16.022 5.843 17.055 Atomic orbital electron populations 1.20771 0.91605 1.02378 1.02189 1.19935 0.95908 0.93259 1.00371 1.20910 0.94263 0.97082 1.02631 1.20999 0.94232 0.97571 1.01417 1.20996 0.99703 0.91880 1.01618 1.20352 0.94169 0.94920 0.97759 1.20722 0.90004 0.86527 0.93458 1.21983 1.01694 1.01209 0.94852 1.23232 0.96589 0.99242 0.99323 1.23132 0.99551 0.95168 0.99370 1.20939 0.86785 0.95524 0.84922 0.95711 1.21035 0.95553 0.90069 1.49194 0.90459 1.25034 0.99217 0.95043 0.92723 1.69929 1.22739 1.13119 1.47337 0.87082 0.81071 0.83683 0.79016 1.21284 1.21907 1.13938 1.88894 1.43197 1.54405 1.41796 1.21135 0.94043 0.97842 0.98295 0.91387 0.91561 0.91926 0.86756 0.86572 0.86234 0.91588 0.92834 0.92473 0.91248 0.91211 0.90970 0.91595 0.92612 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 36.00 0.36 -1.04 16 2 C -0.09 -1.43 5.88 -104.63 -0.62 -2.05 16 3 C -0.13 -1.76 9.70 -39.58 -0.38 -2.15 16 4 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 5 C -0.12 -1.83 8.75 -39.58 -0.35 -2.18 16 6 C -0.07 -1.25 4.82 -104.62 -0.50 -1.75 16 7 C 0.13 2.48 1.08 -91.05 -0.10 2.38 16 8 C -0.14 -2.34 8.71 37.16 0.32 -2.02 16 9 C -0.15 -2.44 5.04 -24.78 -0.12 -2.57 16 10 C -0.13 -2.65 6.54 -24.48 -0.16 -2.81 16 11 C 0.17 4.18 2.68 -26.86 -0.07 4.10 16 12 H 0.03 0.62 7.63 -51.93 -0.40 0.22 16 13 C -0.52 -14.88 9.39 -34.44 -0.32 -15.21 16 14 H 0.08 2.35 8.02 -52.49 -0.42 1.93 16 15 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 16 N -0.89 -27.68 13.96 55.43 0.77 -26.91 16 17 Si 0.86 22.02 27.07 -169.99 -4.60 17.41 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.22 -5.25 4.16 56.52 0.24 -5.02 16 21 O -0.36 -8.42 6.44 -35.23 -0.23 -8.64 16 22 C -0.10 -1.70 9.01 -39.58 -0.36 -2.06 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.81 8.09 -51.92 -0.42 0.39 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.12 1.54 6.84 -52.49 -0.36 1.18 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.10 6.87 -51.93 -0.36 0.74 16 33 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 34 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.13 2.56 6.32 -52.49 -0.33 2.23 16 LS Contribution 295.84 15.07 4.46 4.46 Total: -1.00 -31.22 295.84 -8.18 -39.40 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.79 Total: 1.29 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -2.80 Total: -27.00 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.77 Total: -26.91 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.23 Total: -8.64 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.60 Total: 17.41 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.22 -8.18 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309478684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.518 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds