Wall clock time and date at job start Mon Mar 30 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38246 * 120.00122 * 2 1 4 4 C 1.38222 * 120.00383 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99432 * 359.97438 * 4 3 2 6 6 C 1.38206 * 120.00261 * 359.95689 * 5 4 3 7 7 C 1.50703 * 120.00031 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.89423 * 90.52420 * 7 6 5 9 9 C 1.54380 * 109.82989 * 329.58852 * 7 6 5 10 10 C 1.55312 * 102.25056 * 219.13000 * 9 7 6 11 11 C 1.54951 * 100.94225 * 34.13333 * 10 9 7 12 12 H 1.08995 * 110.30511 * 82.46801 * 11 10 9 13 13 C 1.50696 * 110.39073 * 204.59450 * 11 10 9 14 14 H 1.08002 * 120.00141 * 357.22343 * 13 11 10 15 15 C 1.37878 * 119.99843 * 177.21402 * 13 11 10 16 16 N 1.31511 * 119.99899 * 179.97438 * 15 13 11 17 17 Si 1.86803 * 120.00054 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.46872 * 89.99471 * 17 15 13 19 19 H 1.48494 * 109.46944 * 209.99695 * 17 15 13 20 20 H 1.48503 * 109.46918 * 329.99822 * 17 15 13 21 21 O 1.43245 * 109.82902 * 211.45454 * 7 6 5 22 22 C 1.38221 * 119.99845 * 180.21111 * 2 1 3 23 23 H 1.08998 * 109.47447 * 89.99771 * 1 2 3 24 24 H 1.09008 * 109.47208 * 210.00211 * 1 2 3 25 25 H 1.09005 * 109.47086 * 329.99774 * 1 2 3 26 26 H 1.08001 * 120.00385 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.00647 * 179.97438 * 4 3 2 28 28 H 1.07994 * 119.99812 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.46749 * 179.47685 * 8 7 6 30 30 H 1.08993 * 109.46853 * 299.47763 * 8 7 6 31 31 H 1.08999 * 109.47510 * 59.48194 * 8 7 6 32 32 H 1.08999 * 110.84912 * 337.32025 * 9 7 6 33 33 H 1.08999 * 110.84558 * 100.93988 * 9 7 6 34 34 H 1.09000 * 111.12606 * 276.21364 * 10 9 7 35 35 H 1.09000 * 111.15931 * 152.06685 * 10 9 7 36 36 H 0.97007 * 119.99962 * 180.02562 * 16 15 13 37 37 H 1.07998 * 119.99752 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0009 7 6 4.3341 -2.5021 0.0015 8 6 4.5840 -2.9584 1.4404 9 6 5.6802 -2.3301 -0.7347 10 6 5.8026 -3.6677 -1.5145 11 6 4.3162 -3.9505 -1.8486 12 1 4.0149 -3.3921 -2.7347 13 6 4.0976 -5.4262 -2.0617 14 1 4.9339 -6.1081 -2.0165 15 6 2.8299 -5.9059 -2.3143 16 7 2.6392 -7.1937 -2.5009 17 14 1.3835 -4.7264 -2.3931 18 1 1.2110 -4.2471 -3.7880 19 1 0.1496 -5.4263 -1.9540 20 1 1.6401 -3.5682 -1.4998 21 8 3.5811 -3.4983 -0.7004 22 6 2.1980 -1.1970 -0.0044 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1325 -0.0010 28 1 5.3516 -0.0001 -0.0014 29 1 5.1209 -3.9070 1.4326 30 1 5.1790 -2.2083 1.9612 31 1 3.6300 -3.0851 1.9523 32 1 5.6420 -1.4835 -1.4202 33 1 6.4993 -2.2187 -0.0243 34 1 6.2200 -4.4530 -0.8842 35 1 6.3922 -3.5412 -2.4225 36 1 1.7473 -7.5311 -2.6790 37 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309478684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:03 Heat of formation + Delta-G solvation = -47.630789 kcal Electronic energy + Delta-G solvation = -18315.074563 eV Core-core repulsion = 15635.036518 eV Total energy + Delta-G solvation = -2680.038046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17426 -39.35476 -35.17706 -34.12690 -32.86124 -32.71655 -30.58691 -28.68213 -27.75231 -25.30932 -23.52028 -22.84311 -21.77667 -20.40342 -18.93715 -17.89882 -16.94650 -16.68608 -16.32042 -15.84140 -15.24685 -14.87136 -14.69344 -14.54244 -14.32004 -13.96606 -13.73823 -13.55886 -13.29226 -13.02698 -12.86953 -12.72764 -12.60973 -12.41869 -12.07590 -11.84762 -11.64435 -11.42804 -11.39947 -11.22999 -10.74247 -10.04199 -9.62566 -9.43625 -8.36689 -6.48008 0.48903 0.55563 1.33178 1.35027 1.66178 2.40510 2.86274 2.91300 3.38687 3.70388 3.91649 4.03497 4.11127 4.14991 4.30699 4.37724 4.49413 4.56518 4.60068 4.65928 4.74018 4.77884 4.83839 4.92670 4.96898 5.01791 5.10775 5.14301 5.21705 5.32589 5.35688 5.49067 5.54563 5.63292 5.75124 5.81010 6.19037 6.20780 6.51697 6.78028 7.29160 8.77321 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022173 B = 0.009354 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.498445 B = 2992.620145 C = 3870.452149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.129 4.129 4 C -0.117 4.117 5 C -0.126 4.126 6 C -0.091 4.091 7 C 0.120 3.880 8 C -0.136 4.136 9 C -0.131 4.131 10 C -0.133 4.133 11 C 0.172 3.828 12 H 0.019 0.981 13 C -0.528 4.528 14 H 0.042 0.958 15 C 0.028 3.972 16 N -0.941 5.941 17 Si 0.926 3.074 18 H -0.282 1.282 19 H -0.294 1.294 20 H -0.203 1.203 21 O -0.387 6.387 22 C -0.128 4.128 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.142 0.858 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.266 0.734 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 19.913 6.773 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.146 4.146 4 C -0.135 4.135 5 C -0.144 4.144 6 C -0.092 4.092 7 C 0.080 3.920 8 C -0.194 4.194 9 C -0.168 4.168 10 C -0.170 4.170 11 C 0.117 3.883 12 H 0.036 0.964 13 C -0.565 4.565 14 H 0.060 0.940 15 C -0.171 4.171 16 N -0.580 5.580 17 Si 0.750 3.250 18 H -0.208 1.208 19 H -0.221 1.221 20 H -0.125 1.125 21 O -0.308 6.308 22 C -0.146 4.146 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.107 0.893 26 H 0.164 0.836 27 H 0.170 0.830 28 H 0.160 0.840 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.198 19.714 6.813 20.893 hybrid contribution -0.716 -0.768 -0.404 1.125 sum 0.482 18.946 6.409 20.007 Atomic orbital electron populations 1.20825 0.90193 1.03332 1.02652 1.20219 0.97205 0.93030 0.99879 1.21317 0.94801 0.97506 1.01019 1.21450 0.94350 0.98449 0.99216 1.21234 1.00867 0.91246 1.01018 1.20285 0.94019 0.95133 0.99718 1.21059 0.90798 0.86323 0.93791 1.21966 1.01494 1.01647 0.94257 1.23209 0.96455 0.97546 0.99566 1.23059 0.96568 0.96908 1.00487 1.20729 0.89891 0.92364 0.85364 0.96373 1.21359 0.94395 0.92407 1.48352 0.93958 1.25872 1.02098 0.96424 0.92695 1.70056 1.23423 1.14986 1.49580 0.86143 0.77527 0.82018 0.79286 1.20790 1.22092 1.12515 1.88774 1.44226 1.56196 1.41592 1.21052 0.94649 0.97736 1.01203 0.91092 0.92376 0.89267 0.83620 0.82964 0.83984 0.92794 0.89477 0.93668 0.89726 0.87870 0.92004 0.90033 0.92516 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 10.01 71.23 0.71 -1.87 16 2 C -0.10 -2.89 5.88 -19.87 -0.12 -3.01 16 3 C -0.13 -2.91 9.70 22.27 0.22 -2.69 16 4 C -0.12 -2.51 10.05 22.27 0.22 -2.28 16 5 C -0.13 -3.19 8.75 22.27 0.19 -2.99 16 6 C -0.09 -2.99 4.82 -19.87 -0.10 -3.09 16 7 C 0.12 4.29 1.08 -11.07 -0.01 4.27 16 8 C -0.14 -4.39 8.71 71.98 0.63 -3.76 16 9 C -0.13 -3.97 5.04 31.86 0.16 -3.81 16 10 C -0.13 -5.10 6.54 32.06 0.21 -4.89 16 11 C 0.17 8.37 2.68 30.51 0.08 8.45 16 12 H 0.02 0.92 7.63 -2.39 -0.02 0.90 16 13 C -0.53 -31.32 9.39 25.60 0.24 -31.08 16 14 H 0.04 2.72 8.02 -2.91 -0.02 2.70 16 15 C 0.03 1.73 5.47 84.66 0.46 2.19 16 16 N -0.94 -60.75 13.96 21.45 0.30 -60.45 16 17 Si 0.93 47.21 27.07 68.60 1.86 49.07 16 18 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 19 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 20 H -0.20 -9.87 4.16 99.48 0.41 -9.46 16 21 O -0.39 -18.08 6.44 -148.98 -0.96 -19.04 16 22 C -0.13 -4.47 9.01 22.27 0.20 -4.27 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 1.39 8.09 -2.38 -0.02 1.37 16 25 H 0.09 1.51 8.09 -2.38 -0.02 1.49 16 26 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 27 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 28 H 0.14 2.89 6.84 -2.91 -0.02 2.87 16 29 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 2.34 6.87 -2.39 -0.02 2.32 16 33 H 0.10 2.47 7.82 -2.39 -0.02 2.45 16 34 H 0.06 2.48 8.05 -2.39 -0.02 2.46 16 35 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.27 16.13 8.31 -92.70 -0.77 15.36 16 37 H 0.10 3.96 6.32 -2.91 -0.02 3.94 16 Total: -1.00 -71.08 295.84 5.04 -66.03 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.74 Total: 13.21 kcal Atomic # 6 Polarization: -51.93 SS G_CDS: 3.11 Total: -48.82 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.30 Total: -60.45 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.96 Total: -19.04 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.86 Total: 49.07 kcal Total: -71.08 5.04 -66.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309478684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.401 kcal (2) G-P(sol) polarization free energy of solvation -71.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds