Wall clock time and date at job start Mon Mar 30 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38252 * 120.00285 * 2 1 4 4 C 1.38215 * 120.00294 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99734 * 359.97438 * 4 3 2 6 6 C 1.38218 * 120.00084 * 0.09586 * 5 4 3 7 7 C 1.50701 * 120.00066 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.86886 * 90.37882 * 7 6 5 9 9 C 1.54099 * 109.87880 * 329.21741 * 7 6 5 10 10 C 1.54810 * 104.18896 * 238.54482 * 9 7 6 11 11 C 1.55004 * 102.08847 * 339.11983 * 10 9 7 12 12 H 1.09001 * 110.61551 * 278.51819 * 11 10 9 13 13 C 1.50698 * 110.61653 * 155.52626 * 11 10 9 14 14 H 1.08007 * 120.00016 * 4.47302 * 13 11 10 15 15 C 1.37876 * 120.00186 * 184.47568 * 13 11 10 16 16 N 1.31517 * 119.99600 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00227 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47200 * 119.99844 * 17 15 13 20 20 H 1.48503 * 109.47089 * 240.00086 * 17 15 13 21 21 O 1.43733 * 109.88022 * 211.38453 * 7 6 5 22 22 C 1.38212 * 119.99840 * 180.02562 * 2 1 3 23 23 H 1.08992 * 109.47192 * 89.99463 * 1 2 3 24 24 H 1.09001 * 109.47460 * 210.00162 * 1 2 3 25 25 H 1.09001 * 109.46884 * 329.99826 * 1 2 3 26 26 H 1.08000 * 120.00419 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.00164 * 179.72593 * 4 3 2 28 28 H 1.08001 * 120.00211 * 180.02562 * 5 4 3 29 29 H 1.08995 * 109.47140 * 59.29506 * 8 7 6 30 30 H 1.08997 * 109.47325 * 179.30444 * 8 7 6 31 31 H 1.09009 * 109.47110 * 299.29592 * 8 7 6 32 32 H 1.08998 * 110.48909 * 357.21988 * 9 7 6 33 33 H 1.09000 * 110.48877 * 119.86771 * 9 7 6 34 34 H 1.08999 * 110.90837 * 220.92453 * 10 9 7 35 35 H 1.08995 * 110.93801 * 97.33083 * 10 9 7 36 36 H 0.97002 * 119.99301 * 179.97438 * 16 15 13 37 37 H 1.08000 * 119.99977 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5805 -1.1971 0.0001 7 6 4.3340 -2.5022 0.0007 8 6 4.5836 -2.9579 1.4398 9 6 5.6753 -2.3333 -0.7389 10 6 5.6096 -3.3712 -1.8857 11 6 4.5338 -4.3596 -1.3677 12 1 4.9701 -5.0665 -0.6620 13 6 3.8845 -5.0871 -2.5167 14 1 4.2426 -4.9343 -3.5241 15 6 2.8332 -5.9477 -2.2819 16 7 2.3975 -6.1341 -1.0551 17 14 2.0279 -6.8490 -3.7061 18 1 2.6983 -6.4682 -4.9754 19 1 2.1538 -8.3141 -3.4995 20 1 0.5910 -6.4806 -3.7760 21 8 3.5800 -3.5022 -0.7047 22 6 2.1980 -1.1970 -0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6584 2.1326 0.0004 27 1 4.1204 2.1325 -0.0039 28 1 5.3517 -0.0002 0.0024 29 1 3.6298 -3.0811 1.9525 30 1 5.1178 -3.9080 1.4326 31 1 5.1815 -2.2090 1.9595 32 1 5.7642 -1.3245 -1.1420 33 1 6.5090 -2.5536 -0.0723 34 1 6.5693 -3.8721 -2.0124 35 1 5.2914 -2.9029 -2.8171 36 1 1.6576 -6.7393 -0.8900 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309478686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:05 Heat of formation + Delta-G solvation = -33.193924 kcal Electronic energy + Delta-G solvation = -18131.954241 eV Core-core repulsion = 15452.542225 eV Total energy + Delta-G solvation = -2679.412016 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61405 -37.76364 -33.35059 -32.34303 -31.26944 -30.84544 -28.94806 -26.77589 -26.39875 -23.75398 -22.02213 -21.55329 -20.00895 -18.71416 -16.84514 -16.07117 -15.32223 -14.81863 -14.55811 -14.31657 -13.74519 -13.63497 -13.33442 -12.88924 -12.67814 -12.45767 -12.09513 -11.88403 -11.63385 -11.54203 -11.48588 -10.98154 -10.91460 -10.68532 -10.51580 -10.32513 -10.12334 -9.84803 -9.67554 -9.05313 -8.61472 -8.32597 -8.22169 -7.99107 -6.00888 -4.12803 1.73452 1.83527 3.30151 3.38116 3.41965 4.15690 4.42765 4.88301 5.11498 5.16984 5.30780 5.46156 5.47578 5.59205 5.65827 5.70264 5.79584 5.84089 5.98610 6.03510 6.10396 6.16206 6.25222 6.39023 6.45581 6.51946 6.62116 6.65722 6.70762 6.82533 6.84261 6.90546 7.06811 7.17813 7.44844 7.54429 7.89868 8.25033 8.60026 8.99564 9.57328 11.06783 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.007556 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.729679 B = 3704.618135 C = 4381.134084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.127 4.127 6 C -0.054 4.054 7 C 0.127 3.873 8 C -0.148 4.148 9 C -0.149 4.149 10 C -0.147 4.147 11 C 0.211 3.789 12 H 0.026 0.974 13 C -0.529 4.529 14 H 0.064 0.936 15 C 0.077 3.923 16 N -0.862 5.862 17 Si 0.890 3.110 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 O -0.338 6.338 22 C -0.089 4.089 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.260 0.740 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 11.532 3.728 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.145 4.145 6 C -0.055 4.055 7 C 0.086 3.914 8 C -0.206 4.206 9 C -0.186 4.186 10 C -0.185 4.185 11 C 0.155 3.845 12 H 0.043 0.957 13 C -0.566 4.566 14 H 0.082 0.918 15 C -0.128 4.128 16 N -0.498 5.498 17 Si 0.718 3.282 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 O -0.257 6.257 22 C -0.107 4.107 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.233 11.409 3.839 12.101 hybrid contribution -0.232 -0.433 -0.705 0.859 sum 1.001 10.976 3.135 11.459 Atomic orbital electron populations 1.20752 0.91634 1.02261 1.02139 1.19923 0.95878 0.93232 1.00392 1.20887 0.94232 0.97056 1.02948 1.20959 0.94237 0.97449 1.01700 1.21007 0.99657 0.91924 1.01944 1.19992 0.94000 0.94180 0.97294 1.20699 0.90255 0.87658 0.92746 1.22151 1.01650 1.00799 0.95991 1.23129 0.96924 1.00253 0.98323 1.23202 1.00375 0.97324 0.97619 1.20654 0.85197 0.87337 0.91277 0.95672 1.21033 1.18365 1.24234 0.92982 0.91778 1.25064 0.96413 0.95844 0.95503 1.70053 1.25613 1.35039 1.19136 0.86578 0.79453 0.79374 0.82822 1.19636 1.20900 1.20866 1.89283 1.30633 1.40096 1.65698 1.21056 0.93971 0.97819 0.97804 0.91411 0.91507 0.92136 0.86882 0.86702 0.86235 0.92379 0.92086 0.93255 0.91429 0.91857 0.92328 0.91786 0.93039 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 36.00 0.36 -1.11 16 2 C -0.09 -1.52 5.88 -104.63 -0.62 -2.13 16 3 C -0.13 -1.92 9.70 -39.58 -0.38 -2.30 16 4 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 5 C -0.13 -2.04 8.73 -39.58 -0.35 -2.39 16 6 C -0.05 -1.03 4.85 -104.62 -0.51 -1.54 16 7 C 0.13 2.61 1.00 -91.20 -0.09 2.52 16 8 C -0.15 -2.76 8.60 37.16 0.32 -2.44 16 9 C -0.15 -2.74 5.75 -25.20 -0.14 -2.89 16 10 C -0.15 -3.14 6.55 -24.72 -0.16 -3.30 16 11 C 0.21 5.46 3.11 -26.83 -0.08 5.38 16 12 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.53 -14.95 8.83 -34.44 -0.30 -15.26 16 14 H 0.06 1.77 7.78 -52.48 -0.41 1.36 16 15 C 0.08 2.20 5.42 -17.82 -0.10 2.10 16 16 N -0.86 -25.47 12.95 55.43 0.72 -24.75 16 17 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 O -0.34 -8.71 9.15 -35.23 -0.32 -9.04 16 22 C -0.09 -1.70 9.01 -39.58 -0.36 -2.05 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 25 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.12 1.69 6.48 -52.49 -0.34 1.35 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.17 8.13 -51.93 -0.42 0.74 16 31 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.07 1.13 5.80 -51.93 -0.30 0.83 16 33 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.39 8.05 -51.93 -0.42 0.97 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.13 2.81 7.54 -52.49 -0.40 2.41 16 LS Contribution 303.25 15.07 4.57 4.57 Total: -1.00 -30.45 303.25 -8.48 -38.93 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.62 Total: 1.41 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -2.81 Total: -27.60 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.72 Total: -24.75 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.32 Total: -9.04 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.45 -8.48 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309478686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.739 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds