Wall clock time and date at job start Mon Mar 30 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38252 * 120.00285 * 2 1 4 4 C 1.38215 * 120.00294 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99734 * 359.97438 * 4 3 2 6 6 C 1.38218 * 120.00084 * 0.09586 * 5 4 3 7 7 C 1.50701 * 120.00066 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.86886 * 90.37882 * 7 6 5 9 9 C 1.54099 * 109.87880 * 329.21741 * 7 6 5 10 10 C 1.54810 * 104.18896 * 238.54482 * 9 7 6 11 11 C 1.55004 * 102.08847 * 339.11983 * 10 9 7 12 12 H 1.09001 * 110.61551 * 278.51819 * 11 10 9 13 13 C 1.50698 * 110.61653 * 155.52626 * 11 10 9 14 14 H 1.08007 * 120.00016 * 4.47302 * 13 11 10 15 15 C 1.37876 * 120.00186 * 184.47568 * 13 11 10 16 16 N 1.31517 * 119.99600 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00227 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47200 * 119.99844 * 17 15 13 20 20 H 1.48503 * 109.47089 * 240.00086 * 17 15 13 21 21 O 1.43733 * 109.88022 * 211.38453 * 7 6 5 22 22 C 1.38212 * 119.99840 * 180.02562 * 2 1 3 23 23 H 1.08992 * 109.47192 * 89.99463 * 1 2 3 24 24 H 1.09001 * 109.47460 * 210.00162 * 1 2 3 25 25 H 1.09001 * 109.46884 * 329.99826 * 1 2 3 26 26 H 1.08000 * 120.00419 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.00164 * 179.72593 * 4 3 2 28 28 H 1.08001 * 120.00211 * 180.02562 * 5 4 3 29 29 H 1.08995 * 109.47140 * 59.29506 * 8 7 6 30 30 H 1.08997 * 109.47325 * 179.30444 * 8 7 6 31 31 H 1.09009 * 109.47110 * 299.29592 * 8 7 6 32 32 H 1.08998 * 110.48909 * 357.21988 * 9 7 6 33 33 H 1.09000 * 110.48877 * 119.86771 * 9 7 6 34 34 H 1.08999 * 110.90837 * 220.92453 * 10 9 7 35 35 H 1.08995 * 110.93801 * 97.33083 * 10 9 7 36 36 H 0.97002 * 119.99301 * 179.97438 * 16 15 13 37 37 H 1.08000 * 119.99977 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5805 -1.1971 0.0001 7 6 4.3340 -2.5022 0.0007 8 6 4.5836 -2.9579 1.4398 9 6 5.6753 -2.3333 -0.7389 10 6 5.6096 -3.3712 -1.8857 11 6 4.5338 -4.3596 -1.3677 12 1 4.9701 -5.0665 -0.6620 13 6 3.8845 -5.0871 -2.5167 14 1 4.2426 -4.9343 -3.5241 15 6 2.8332 -5.9477 -2.2819 16 7 2.3975 -6.1341 -1.0551 17 14 2.0279 -6.8490 -3.7061 18 1 2.6983 -6.4682 -4.9754 19 1 2.1538 -8.3141 -3.4995 20 1 0.5910 -6.4806 -3.7760 21 8 3.5800 -3.5022 -0.7047 22 6 2.1980 -1.1970 -0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6584 2.1326 0.0004 27 1 4.1204 2.1325 -0.0039 28 1 5.3517 -0.0002 0.0024 29 1 3.6298 -3.0811 1.9525 30 1 5.1178 -3.9080 1.4326 31 1 5.1815 -2.2090 1.9595 32 1 5.7642 -1.3245 -1.1420 33 1 6.5090 -2.5536 -0.0723 34 1 6.5693 -3.8721 -2.0124 35 1 5.2914 -2.9029 -2.8171 36 1 1.6576 -6.7393 -0.8900 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309478686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:05 Heat of formation + Delta-G solvation = -49.929483 kcal Electronic energy + Delta-G solvation = -18132.679950 eV Core-core repulsion = 15452.542225 eV Total energy + Delta-G solvation = -2680.137724 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.06872 -39.27015 -35.14038 -33.97863 -32.73779 -32.52702 -30.41174 -28.54278 -27.71281 -25.49807 -23.50652 -22.88589 -21.75798 -20.16869 -18.77695 -17.56985 -16.93727 -16.63085 -16.04739 -15.85972 -15.30222 -15.00374 -14.58779 -14.45177 -14.25387 -13.98677 -13.63157 -13.48543 -13.05141 -13.02172 -12.80611 -12.73430 -12.48810 -12.25996 -12.20156 -12.02534 -11.79917 -11.35739 -11.33338 -10.98866 -10.74167 -9.96810 -9.60726 -9.41260 -8.17060 -6.36897 0.50394 0.57616 1.37235 1.38658 1.51049 2.38591 2.90468 3.03583 3.52881 3.75587 4.03797 4.07664 4.08521 4.19382 4.34039 4.37920 4.53069 4.58350 4.62619 4.65743 4.79015 4.81167 4.86959 4.95482 4.98377 5.03407 5.14193 5.15594 5.23672 5.34438 5.39280 5.52883 5.63242 5.73872 5.77472 5.85157 6.16608 6.21851 6.59296 6.99298 7.38034 8.91228 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.007556 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.729679 B = 3704.618135 C = 4381.134084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.130 4.130 6 C -0.077 4.077 7 C 0.113 3.887 8 C -0.142 4.142 9 C -0.137 4.137 10 C -0.140 4.140 11 C 0.202 3.798 12 H -0.006 1.006 13 C -0.552 4.552 14 H 0.064 0.936 15 C 0.023 3.977 16 N -0.900 5.900 17 Si 0.960 3.040 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.282 1.282 21 O -0.374 6.374 22 C -0.124 4.124 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.261 0.739 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 14.434 3.261 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.146 4.146 4 C -0.133 4.133 5 C -0.148 4.148 6 C -0.078 4.078 7 C 0.073 3.927 8 C -0.199 4.199 9 C -0.174 4.174 10 C -0.178 4.178 11 C 0.146 3.854 12 H 0.012 0.988 13 C -0.590 4.590 14 H 0.082 0.918 15 C -0.179 4.179 16 N -0.537 5.537 17 Si 0.784 3.216 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.208 1.208 21 O -0.293 6.293 22 C -0.142 4.142 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.109 0.891 26 H 0.167 0.833 27 H 0.174 0.826 28 H 0.160 0.840 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.063 14.316 3.371 14.851 hybrid contribution -0.495 -1.258 -0.502 1.442 sum 1.569 13.058 2.869 13.461 Atomic orbital electron populations 1.20798 0.90081 1.03213 1.02629 1.20210 0.97264 0.92873 0.99736 1.21323 0.94763 0.97463 1.01099 1.21447 0.94374 0.98304 0.99147 1.21242 1.00818 0.91241 1.01463 1.19976 0.93868 0.94504 0.99406 1.21028 0.91191 0.87464 0.92999 1.22095 1.01085 1.01188 0.95581 1.23109 0.96467 1.00516 0.97303 1.23075 0.99482 0.97069 0.98192 1.20520 0.86448 0.88157 0.90247 0.98840 1.21452 1.18782 1.25008 0.93738 0.91819 1.25941 0.97040 0.96751 0.98170 1.70193 1.26222 1.35946 1.21335 0.85495 0.78105 0.78318 0.79641 1.18605 1.19855 1.20792 1.89204 1.32097 1.41400 1.66648 1.20905 0.94622 0.97510 1.01193 0.91074 0.92681 0.89073 0.83273 0.82650 0.83955 0.94221 0.93457 0.89662 0.89041 0.89369 0.90521 0.92546 0.93039 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.83 10.01 71.23 0.71 -2.12 16 2 C -0.10 -3.15 5.88 -19.87 -0.12 -3.27 16 3 C -0.13 -3.23 9.70 22.27 0.22 -3.02 16 4 C -0.12 -2.77 10.05 22.27 0.22 -2.54 16 5 C -0.13 -3.76 8.73 22.27 0.19 -3.57 16 6 C -0.08 -2.91 4.85 -19.86 -0.10 -3.01 16 7 C 0.11 4.71 1.00 -11.17 -0.01 4.69 16 8 C -0.14 -5.40 8.60 71.98 0.62 -4.78 16 9 C -0.14 -4.83 5.75 31.58 0.18 -4.65 16 10 C -0.14 -5.97 6.55 31.90 0.21 -5.76 16 11 C 0.20 10.93 3.11 30.53 0.10 11.02 16 12 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 13 C -0.55 -32.40 8.83 25.60 0.23 -32.18 16 14 H 0.06 3.61 7.78 -2.91 -0.02 3.59 16 15 C 0.02 1.35 5.42 84.65 0.46 1.81 16 16 N -0.90 -55.74 12.95 21.45 0.28 -55.46 16 17 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 O -0.37 -20.33 9.15 -148.98 -1.36 -21.70 16 22 C -0.12 -4.93 9.01 22.27 0.20 -4.73 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.05 1.50 8.09 -2.39 -0.02 1.48 16 25 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 26 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 27 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.14 3.40 6.48 -2.91 -0.02 3.38 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.87 8.13 -2.39 -0.02 1.85 16 31 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.09 2.78 5.80 -2.39 -0.01 2.77 16 33 H 0.09 2.66 7.70 -2.39 -0.02 2.64 16 34 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.06 2.45 8.05 -2.39 -0.02 2.43 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.09 4.17 7.54 -2.91 -0.02 4.15 16 Total: -1.00 -70.28 303.25 5.09 -65.19 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 1.03 Total: 16.72 kcal Atomic # 6 Polarization: -55.20 SS G_CDS: 3.11 Total: -52.08 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.28 Total: -55.46 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.36 Total: -21.70 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -70.28 5.09 -65.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309478686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.261 kcal (2) G-P(sol) polarization free energy of solvation -70.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds