Wall clock time and date at job start Mon Mar 30 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99741 * 2 1 4 4 C 1.38215 * 119.99791 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99936 * 359.95189 * 4 3 2 6 6 C 1.38214 * 120.00139 * 0.02865 * 5 4 3 7 7 C 1.50694 * 120.00023 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.82641 * 269.29593 * 7 6 5 9 9 C 1.54386 * 109.83340 * 30.18505 * 7 6 5 10 10 C 1.55302 * 102.25540 * 140.86845 * 9 7 6 11 11 C 1.54951 * 100.94240 * 325.86569 * 10 9 7 12 12 H 1.08990 * 110.31001 * 277.43170 * 11 10 9 13 13 C 1.50697 * 110.30912 * 155.35711 * 11 10 9 14 14 H 1.08007 * 120.00027 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00271 * 179.97438 * 13 11 10 16 16 N 1.31515 * 120.00307 * 180.02562 * 15 13 11 17 17 Si 1.86804 * 119.99866 * 0.02562 * 15 13 11 18 18 H 1.48503 * 109.47022 * 89.99293 * 17 15 13 19 19 H 1.48492 * 109.47351 * 209.99691 * 17 15 13 20 20 H 1.48504 * 109.47140 * 330.00058 * 17 15 13 21 21 O 1.43242 * 109.83009 * 148.40860 * 7 6 5 22 22 C 1.38209 * 119.99935 * 179.72199 * 2 1 3 23 23 H 1.09001 * 109.46953 * 89.99972 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99570 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00200 * 1 2 3 26 26 H 1.07997 * 120.00275 * 359.97438 * 3 2 1 27 27 H 1.07990 * 119.99940 * 179.97438 * 4 3 2 28 28 H 1.08002 * 119.99730 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46838 * 60.69964 * 8 7 6 30 30 H 1.08993 * 109.47363 * 180.70416 * 8 7 6 31 31 H 1.09001 * 109.46907 * 300.70530 * 8 7 6 32 32 H 1.08998 * 110.84388 * 259.06454 * 9 7 6 33 33 H 1.09001 * 110.84334 * 22.47602 * 9 7 6 34 34 H 1.09000 * 111.12256 * 83.78499 * 10 9 7 35 35 H 1.08997 * 111.12535 * 207.95275 * 10 9 7 36 36 H 0.97005 * 119.99911 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.00050 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0021 6 6 3.5807 -1.1970 0.0025 7 6 4.3342 -2.5020 0.0036 8 6 4.5790 -2.9611 -1.4353 9 6 5.6830 -2.3275 0.7343 10 6 5.8084 -3.6623 1.5181 11 6 4.3232 -3.9441 1.8587 12 1 4.0255 -3.3840 2.7450 13 6 4.1073 -5.4195 2.0762 14 1 4.9363 -6.1058 1.9853 15 6 2.8517 -5.8933 2.3922 16 7 2.6633 -7.1809 2.5825 17 14 1.4179 -4.7063 2.5502 18 1 0.7557 -4.5516 1.2300 19 1 0.4415 -5.2377 3.5346 20 1 1.9170 -3.3858 3.0112 21 8 3.5829 -3.4963 0.7097 22 6 2.1981 -1.1969 0.0058 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6583 2.1327 -0.0004 27 1 4.1204 2.1326 0.0001 28 1 5.3518 0.0001 0.0021 29 1 5.1749 -2.2134 -1.9588 30 1 5.1130 -3.9112 -1.4276 31 1 3.6233 -3.0856 -1.9445 32 1 6.4995 -2.2185 0.0205 33 1 5.6483 -1.4764 1.4144 34 1 6.2234 -4.4498 0.8890 35 1 6.4010 -3.5320 2.4235 36 1 1.7798 -7.5143 2.8045 37 1 1.6581 -2.1322 0.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309478690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:08 Heat of formation + Delta-G solvation = -49.942666 kcal Electronic energy + Delta-G solvation = -18290.386607 eV Core-core repulsion = 15610.248311 eV Total energy + Delta-G solvation = -2680.138296 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.19946 -39.38435 -35.21209 -34.16390 -32.89438 -32.74915 -30.61570 -28.71668 -27.78592 -25.33860 -23.54486 -22.87800 -21.81099 -20.40827 -19.02223 -17.86558 -16.96091 -16.74114 -16.37458 -15.88678 -15.28636 -14.80434 -14.75331 -14.54999 -14.38620 -13.99952 -13.80877 -13.59840 -13.31288 -13.06309 -12.88088 -12.74280 -12.53518 -12.44676 -12.26897 -11.89580 -11.78501 -11.44869 -11.40013 -11.29156 -10.88818 -10.13901 -9.67198 -9.46483 -8.40253 -6.51033 0.45912 0.51929 1.27443 1.34131 1.45046 2.30633 2.78854 2.86859 3.37914 3.66866 3.88592 4.00321 4.08027 4.11583 4.27677 4.35062 4.45947 4.52854 4.57505 4.63541 4.71669 4.75671 4.81065 4.91050 4.93751 4.99381 5.08100 5.12239 5.18102 5.29551 5.32839 5.46641 5.51830 5.60391 5.71466 5.77100 6.16348 6.17859 6.48815 6.73546 7.24893 8.74175 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.009286 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.653578 B = 3014.441679 C = 3887.842060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.093 4.093 7 C 0.123 3.877 8 C -0.136 4.136 9 C -0.131 4.131 10 C -0.131 4.131 11 C 0.168 3.832 12 H 0.020 0.980 13 C -0.524 4.524 14 H 0.048 0.952 15 C 0.032 3.968 16 N -0.936 5.936 17 Si 0.955 3.045 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.260 1.260 21 O -0.400 6.400 22 C -0.131 4.131 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.268 0.732 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 19.649 -6.652 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.143 4.143 6 C -0.093 4.093 7 C 0.084 3.916 8 C -0.194 4.194 9 C -0.168 4.168 10 C -0.169 4.169 11 C 0.112 3.888 12 H 0.038 0.962 13 C -0.561 4.561 14 H 0.066 0.934 15 C -0.168 4.168 16 N -0.576 5.576 17 Si 0.782 3.218 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.184 1.184 21 O -0.321 6.321 22 C -0.149 4.149 23 H 0.099 0.901 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.166 0.834 27 H 0.173 0.827 28 H 0.162 0.838 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.468 19.442 -6.667 20.605 hybrid contribution -0.795 -0.625 0.277 1.048 sum 0.673 18.816 -6.390 19.883 Atomic orbital electron populations 1.20831 0.90185 1.02973 1.03031 1.20221 0.97227 0.93018 0.99815 1.21328 0.94838 0.97443 1.00904 1.21474 0.94323 0.98501 0.98969 1.21253 1.00959 0.91141 1.00908 1.20314 0.93946 0.95299 0.99761 1.21055 0.90842 0.85971 0.93761 1.21970 1.01531 1.01801 0.94055 1.23215 0.96285 0.97639 0.99665 1.23050 0.96359 0.96934 1.00563 1.20925 0.90035 0.92612 0.85216 0.96214 1.21367 0.95588 0.92260 1.46893 0.93415 1.25799 1.01572 0.96365 0.93044 1.70035 1.24005 1.14693 1.48859 0.85560 0.78856 0.79739 0.77674 1.20386 1.21544 1.18447 1.88553 1.45423 1.56426 1.41726 1.20935 0.94726 0.97529 1.01709 0.90090 0.93196 0.89400 0.83417 0.82727 0.83752 0.89186 0.92642 0.93776 0.87581 0.89697 0.91784 0.89830 0.92258 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.67 10.01 71.24 0.71 -1.96 16 2 C -0.10 -2.95 5.88 -19.86 -0.12 -3.07 16 3 C -0.13 -2.91 9.70 22.27 0.22 -2.70 16 4 C -0.12 -2.48 10.05 22.27 0.22 -2.25 16 5 C -0.12 -3.20 8.75 22.27 0.19 -3.00 16 6 C -0.09 -3.12 4.82 -19.87 -0.10 -3.21 16 7 C 0.12 4.50 1.08 -11.07 -0.01 4.48 16 8 C -0.14 -4.43 8.71 71.98 0.63 -3.81 16 9 C -0.13 -4.01 5.05 31.86 0.16 -3.85 16 10 C -0.13 -5.08 6.53 32.05 0.21 -4.87 16 11 C 0.17 8.31 2.67 30.51 0.08 8.39 16 12 H 0.02 1.03 7.08 -2.39 -0.02 1.02 16 13 C -0.52 -31.23 9.37 25.60 0.24 -30.99 16 14 H 0.05 3.05 8.00 -2.91 -0.02 3.03 16 15 C 0.03 1.97 5.47 84.65 0.46 2.43 16 16 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 17 Si 0.95 50.00 26.47 68.60 1.82 51.82 16 18 H -0.28 -14.59 7.11 99.48 0.71 -13.89 16 19 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 20 H -0.26 -13.27 6.49 99.48 0.65 -12.62 16 21 O -0.40 -19.31 7.57 -148.98 -1.13 -20.44 16 22 C -0.13 -4.72 9.01 22.27 0.20 -4.52 16 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.05 1.32 8.08 -2.39 -0.02 1.30 16 25 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 26 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.16 2.19 8.06 -2.92 -0.02 2.16 16 28 H 0.14 2.93 6.82 -2.91 -0.02 2.91 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 2.52 7.82 -2.39 -0.02 2.50 16 33 H 0.08 2.37 6.85 -2.39 -0.02 2.35 16 34 H 0.06 2.56 8.04 -2.39 -0.02 2.54 16 35 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.27 16.10 8.31 -92.70 -0.77 15.33 16 37 H 0.09 3.80 7.54 -2.91 -0.02 3.78 16 Total: -1.00 -71.65 299.25 5.06 -66.59 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.97 Total: 10.71 kcal Atomic # 6 Polarization: -52.03 SS G_CDS: 3.11 Total: -48.92 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.30 Total: -59.76 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -1.13 Total: -20.44 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.82 Total: 51.82 kcal Total: -71.65 5.06 -66.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309478690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.645 kcal (2) G-P(sol) polarization free energy of solvation -71.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds