Wall clock time and date at job start Mon Mar 30 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38249 * 120.00104 * 2 1 4 4 C 1.38217 * 120.00026 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00251 * 0.09328 * 4 3 2 6 6 C 1.38221 * 119.99391 * 359.86379 * 5 4 3 7 7 C 1.38214 * 119.99647 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00041 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.86955 * 73.37238 * 8 7 2 10 10 C 1.54104 * 109.87561 * 194.37780 * 8 7 2 11 11 C 1.55136 * 104.03300 * 121.41216 * 10 8 7 12 12 C 1.54997 * 102.09293 * 20.99423 * 11 10 8 13 13 H 1.08993 * 110.75492 * 81.45854 * 12 11 10 14 14 C 1.50704 * 110.61690 * 204.39418 * 12 11 10 15 15 H 1.08002 * 120.00094 * 355.52061 * 14 12 11 16 16 C 1.37879 * 119.99811 * 175.52505 * 14 12 11 17 17 N 1.31512 * 119.99771 * 180.02562 * 16 14 12 18 18 Si 1.86802 * 120.00096 * 359.97438 * 16 14 12 19 19 H 1.48497 * 109.47217 * 90.00124 * 18 16 14 20 20 H 1.48501 * 109.46974 * 210.00529 * 18 16 14 21 21 H 1.48500 * 109.47177 * 329.99897 * 18 16 14 22 22 O 1.43738 * 109.88001 * 312.36284 * 8 7 2 23 23 H 1.08993 * 109.47781 * 96.54814 * 1 2 3 24 24 H 1.09001 * 109.47097 * 216.55146 * 1 2 3 25 25 H 1.09004 * 109.46651 * 336.54720 * 1 2 3 26 26 H 1.08003 * 120.00374 * 359.70319 * 3 2 1 27 27 H 1.08004 * 120.00106 * 180.02562 * 4 3 2 28 28 H 1.07995 * 120.00559 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.99421 * 180.02562 * 6 5 4 30 30 H 1.09003 * 109.47246 * 54.62196 * 9 8 7 31 31 H 1.08994 * 109.47181 * 174.62095 * 9 8 7 32 32 H 1.09003 * 109.47122 * 294.62441 * 9 8 7 33 33 H 1.08999 * 110.48327 * 240.13159 * 10 8 7 34 34 H 1.08998 * 110.49300 * 2.77757 * 10 8 7 35 35 H 1.08996 * 110.97697 * 262.76511 * 11 10 8 36 36 H 1.08997 * 110.86487 * 139.16977 * 11 10 8 37 37 H 0.97002 * 119.99599 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2718 -0.0001 -0.0009 6 6 3.5806 -1.1971 0.0000 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5021 0.0017 9 6 0.8273 -2.7474 -1.3766 10 6 2.3983 -3.6575 0.3620 11 6 1.7628 -4.2890 1.6285 12 6 0.2928 -3.8079 1.5284 13 1 -0.2750 -4.4404 0.8461 14 6 -0.3524 -3.7863 2.8902 15 1 0.1892 -4.1518 3.7502 16 6 -1.6340 -3.3001 3.0382 17 7 -2.1968 -3.2807 4.2267 18 14 -2.5706 -2.6674 1.5509 19 1 -3.3315 -3.7833 0.9336 20 1 -3.5128 -1.6013 1.9760 21 1 -1.6119 -2.1147 0.5606 22 8 0.4116 -2.4692 1.0009 23 1 -0.3634 -0.1172 -1.0209 24 1 -0.3633 -0.8256 0.6120 25 1 -0.3633 0.9428 0.4090 26 1 1.6584 2.1326 -0.0048 27 1 4.1205 2.1326 0.0010 28 1 5.3517 -0.0002 -0.0009 29 1 4.1206 -2.1324 -0.0007 30 1 1.6056 -2.6939 -2.1379 31 1 0.3659 -3.7346 -1.3976 32 1 0.0709 -1.9884 -1.5764 33 1 2.4403 -4.3845 -0.4491 34 1 3.3944 -3.2748 0.5845 35 1 2.2359 -3.9082 2.5337 36 1 1.8195 -5.3768 1.5902 37 1 -3.0984 -2.9383 4.3308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309488540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:11 Heat of formation + Delta-G solvation = -13.383314 kcal Electronic energy + Delta-G solvation = -18669.879776 eV Core-core repulsion = 15991.326812 eV Total energy + Delta-G solvation = -2678.552964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.01322 -37.85877 -33.22262 -32.61106 -31.96591 -30.68301 -29.15338 -27.11671 -26.47496 -23.51068 -22.78170 -20.85955 -20.05179 -19.40964 -16.99355 -16.26459 -15.69006 -15.19295 -14.47898 -14.40496 -14.04958 -13.71755 -13.42288 -13.00650 -12.80734 -12.52660 -12.03182 -11.91392 -11.85763 -11.79088 -11.55291 -11.21515 -10.81394 -10.69573 -10.47754 -10.20828 -9.85315 -9.69112 -9.63792 -9.38190 -8.56183 -8.52895 -8.33262 -8.17976 -6.10033 -4.17713 1.65465 1.69080 3.37193 3.43788 3.62400 4.03912 4.51487 4.66351 5.01513 5.17579 5.22399 5.30295 5.30950 5.45950 5.47356 5.66396 5.76888 5.80229 5.92471 5.97961 6.02121 6.14642 6.22339 6.25248 6.29436 6.40128 6.43162 6.51398 6.64875 6.68476 6.75623 6.81317 7.00392 7.14745 7.19332 7.35017 7.65149 8.23840 8.45494 8.91514 9.53219 11.00561 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.009055 C = 0.008033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.232230 B = 3091.573412 C = 3484.942817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.134 4.134 6 C -0.119 4.119 7 C -0.065 4.065 8 C 0.133 3.867 9 C -0.158 4.158 10 C -0.157 4.157 11 C -0.133 4.133 12 C 0.169 3.831 13 H 0.026 0.974 14 C -0.517 4.517 15 H 0.078 0.922 16 C 0.083 3.917 17 N -0.893 5.893 18 Si 0.859 3.141 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.212 1.212 22 O -0.353 6.353 23 H 0.060 0.940 24 H 0.122 0.878 25 H 0.053 0.947 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.513 4.923 -11.439 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.053 4.053 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.137 4.137 7 C -0.065 4.065 8 C 0.092 3.908 9 C -0.215 4.215 10 C -0.194 4.194 11 C -0.171 4.171 12 C 0.114 3.886 13 H 0.044 0.956 14 C -0.554 4.554 15 H 0.096 0.904 16 C -0.121 4.121 17 N -0.530 5.530 18 Si 0.686 3.314 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.135 1.135 22 O -0.274 6.274 23 H 0.078 0.922 24 H 0.140 0.860 25 H 0.072 0.928 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.235 5.151 -11.279 15.460 hybrid contribution -0.433 0.261 -0.599 0.784 sum 8.802 5.412 -11.877 15.743 Atomic orbital electron populations 1.21474 0.91091 1.04832 1.02650 1.19811 0.96563 0.92139 0.96799 1.21038 0.94194 0.97413 1.02060 1.21028 0.94292 0.97701 1.01306 1.21002 0.99302 0.92589 1.02322 1.21228 0.93719 0.98159 1.00562 1.19805 0.93153 0.94396 0.99151 1.20634 0.88763 0.90842 0.90517 1.22274 1.00899 1.02221 0.96153 1.23320 0.99653 0.97376 0.99064 1.23042 0.98105 0.99439 0.96518 1.21143 0.91971 0.80826 0.94645 0.95624 1.20933 0.98894 1.43241 0.92342 0.90378 1.25048 0.97393 0.93611 0.96086 1.69924 1.14913 1.45339 1.22819 0.87237 0.80003 0.78954 0.85163 1.21293 1.21825 1.13468 1.89251 1.52484 1.32757 1.52922 0.92178 0.86026 0.92783 0.86563 0.86720 0.86606 0.85425 0.92724 0.92211 0.91929 0.91568 0.90506 0.91162 0.91943 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.62 36.01 0.31 -2.26 16 2 C -0.05 -0.93 5.79 -104.63 -0.61 -1.53 16 3 C -0.13 -1.95 9.68 -39.59 -0.38 -2.34 16 4 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 5 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 6 C -0.12 -1.81 8.98 -39.58 -0.36 -2.17 16 7 C -0.06 -1.14 4.92 -104.62 -0.52 -1.65 16 8 C 0.13 2.43 0.70 -91.20 -0.06 2.36 16 9 C -0.16 -2.56 8.44 37.16 0.31 -2.25 16 10 C -0.16 -2.61 6.01 -25.02 -0.15 -2.76 16 11 C -0.13 -2.63 6.56 -24.55 -0.16 -2.79 16 12 C 0.17 3.96 2.50 -26.83 -0.07 3.90 16 13 H 0.03 0.61 7.68 -51.93 -0.40 0.21 16 14 C -0.52 -14.62 9.41 -34.44 -0.32 -14.94 16 15 H 0.08 2.38 8.02 -52.49 -0.42 1.96 16 16 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 17 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 18 Si 0.86 21.21 26.83 -169.99 -4.56 16.65 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.21 -4.82 3.89 56.52 0.22 -4.60 16 22 O -0.35 -7.93 4.96 -35.23 -0.17 -8.11 16 23 H 0.06 0.97 7.09 -51.93 -0.37 0.60 16 24 H 0.12 2.56 2.95 -51.93 -0.15 2.41 16 25 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 26 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 27 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.13 1.71 5.54 -52.49 -0.29 1.41 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.03 6.14 -51.93 -0.32 0.71 16 33 H 0.07 0.96 7.70 -51.93 -0.40 0.56 16 34 H 0.08 1.15 4.84 -51.93 -0.25 0.90 16 35 H 0.07 1.46 8.05 -51.93 -0.42 1.04 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 283.98 15.07 4.28 4.28 Total: -1.00 -30.67 283.98 -7.87 -38.54 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.29 Total: 3.75 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: -2.90 Total: -28.45 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.17 Total: -8.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.56 Total: 16.65 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.67 -7.87 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309488540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.158 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds