Wall clock time and date at job start Mon Mar 30 2020 05:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38249 * 120.00104 * 2 1 4 4 C 1.38217 * 120.00026 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00251 * 0.09328 * 4 3 2 6 6 C 1.38221 * 119.99391 * 359.86379 * 5 4 3 7 7 C 1.38214 * 119.99647 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00041 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.86955 * 73.37238 * 8 7 2 10 10 C 1.54104 * 109.87561 * 194.37780 * 8 7 2 11 11 C 1.55136 * 104.03300 * 121.41216 * 10 8 7 12 12 C 1.54997 * 102.09293 * 20.99423 * 11 10 8 13 13 H 1.08993 * 110.75492 * 81.45854 * 12 11 10 14 14 C 1.50704 * 110.61690 * 204.39418 * 12 11 10 15 15 H 1.08002 * 120.00094 * 355.52061 * 14 12 11 16 16 C 1.37879 * 119.99811 * 175.52505 * 14 12 11 17 17 N 1.31512 * 119.99771 * 180.02562 * 16 14 12 18 18 Si 1.86802 * 120.00096 * 359.97438 * 16 14 12 19 19 H 1.48497 * 109.47217 * 90.00124 * 18 16 14 20 20 H 1.48501 * 109.46974 * 210.00529 * 18 16 14 21 21 H 1.48500 * 109.47177 * 329.99897 * 18 16 14 22 22 O 1.43738 * 109.88001 * 312.36284 * 8 7 2 23 23 H 1.08993 * 109.47781 * 96.54814 * 1 2 3 24 24 H 1.09001 * 109.47097 * 216.55146 * 1 2 3 25 25 H 1.09004 * 109.46651 * 336.54720 * 1 2 3 26 26 H 1.08003 * 120.00374 * 359.70319 * 3 2 1 27 27 H 1.08004 * 120.00106 * 180.02562 * 4 3 2 28 28 H 1.07995 * 120.00559 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.99421 * 180.02562 * 6 5 4 30 30 H 1.09003 * 109.47246 * 54.62196 * 9 8 7 31 31 H 1.08994 * 109.47181 * 174.62095 * 9 8 7 32 32 H 1.09003 * 109.47122 * 294.62441 * 9 8 7 33 33 H 1.08999 * 110.48327 * 240.13159 * 10 8 7 34 34 H 1.08998 * 110.49300 * 2.77757 * 10 8 7 35 35 H 1.08996 * 110.97697 * 262.76511 * 11 10 8 36 36 H 1.08997 * 110.86487 * 139.16977 * 11 10 8 37 37 H 0.97002 * 119.99599 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2718 -0.0001 -0.0009 6 6 3.5806 -1.1971 0.0000 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5021 0.0017 9 6 0.8273 -2.7474 -1.3766 10 6 2.3983 -3.6575 0.3620 11 6 1.7628 -4.2890 1.6285 12 6 0.2928 -3.8079 1.5284 13 1 -0.2750 -4.4404 0.8461 14 6 -0.3524 -3.7863 2.8902 15 1 0.1892 -4.1518 3.7502 16 6 -1.6340 -3.3001 3.0382 17 7 -2.1968 -3.2807 4.2267 18 14 -2.5706 -2.6674 1.5509 19 1 -3.3315 -3.7833 0.9336 20 1 -3.5128 -1.6013 1.9760 21 1 -1.6119 -2.1147 0.5606 22 8 0.4116 -2.4692 1.0009 23 1 -0.3634 -0.1172 -1.0209 24 1 -0.3633 -0.8256 0.6120 25 1 -0.3633 0.9428 0.4090 26 1 1.6584 2.1326 -0.0048 27 1 4.1205 2.1326 0.0010 28 1 5.3517 -0.0002 -0.0009 29 1 4.1206 -2.1324 -0.0007 30 1 1.6056 -2.6939 -2.1379 31 1 0.3659 -3.7346 -1.3976 32 1 0.0709 -1.9884 -1.5764 33 1 2.4403 -4.3845 -0.4491 34 1 3.3944 -3.2748 0.5845 35 1 2.2359 -3.9082 2.5337 36 1 1.8195 -5.3768 1.5902 37 1 -3.0984 -2.9383 4.3308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309488540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:10 Heat of formation + Delta-G solvation = -30.743682 kcal Electronic energy + Delta-G solvation = -18670.632578 eV Core-core repulsion = 15991.326812 eV Total energy + Delta-G solvation = -2679.305766 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34363 -39.22295 -35.04160 -33.90980 -33.66920 -32.19922 -30.42178 -28.82075 -27.76994 -25.16483 -23.98917 -22.25814 -21.62817 -20.73123 -19.00382 -17.61363 -17.27757 -16.60495 -16.01344 -15.74298 -15.34675 -15.14861 -14.84538 -14.70695 -14.49305 -13.79820 -13.58000 -13.40311 -13.30217 -13.07505 -12.80346 -12.65080 -12.48812 -12.11437 -11.88132 -11.82297 -11.59222 -11.28449 -11.23886 -11.13474 -10.70375 -10.05014 -9.65002 -9.36501 -8.33681 -6.45844 0.51399 0.56440 1.37759 1.41021 1.67958 2.43273 2.83042 2.99523 3.44756 3.76683 4.00048 4.02740 4.12574 4.14609 4.29229 4.38623 4.46617 4.55112 4.58251 4.72371 4.76863 4.82295 4.83463 4.99088 5.01308 5.08789 5.13580 5.18278 5.25869 5.40332 5.45826 5.51035 5.63229 5.67172 5.78093 5.88122 6.20730 6.24144 6.51170 6.74208 7.29886 8.80471 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.009055 C = 0.008033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.232230 B = 3091.573412 C = 3484.942817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.126 4.126 7 C -0.090 4.090 8 C 0.122 3.878 9 C -0.155 4.155 10 C -0.145 4.145 11 C -0.132 4.132 12 C 0.168 3.832 13 H 0.030 0.970 14 C -0.526 4.526 15 H 0.036 0.964 16 C 0.025 3.975 17 N -0.944 5.944 18 Si 0.921 3.079 19 H -0.281 1.281 20 H -0.298 1.298 21 H -0.184 1.184 22 O -0.372 6.372 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.131 0.869 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.623 5.934 -14.244 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.156 4.156 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.144 4.144 7 C -0.090 4.090 8 C 0.083 3.917 9 C -0.212 4.212 10 C -0.182 4.182 11 C -0.170 4.170 12 C 0.113 3.887 13 H 0.048 0.952 14 C -0.563 4.563 15 H 0.055 0.945 16 C -0.174 4.174 17 N -0.584 5.584 18 Si 0.745 3.255 19 H -0.207 1.207 20 H -0.225 1.225 21 H -0.106 1.106 22 O -0.293 6.293 23 H 0.089 0.911 24 H 0.107 0.893 25 H 0.079 0.921 26 H 0.149 0.851 27 H 0.164 0.836 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.373 6.156 -14.100 19.132 hybrid contribution -0.959 -0.013 0.326 1.013 sum 10.414 6.142 -13.774 18.327 Atomic orbital electron populations 1.21373 0.92058 1.03730 1.02697 1.19938 0.96304 0.93260 0.98601 1.21292 0.95230 0.97279 1.01761 1.21439 0.93812 0.99231 0.99634 1.21422 1.01003 0.91929 1.00581 1.21476 0.92913 0.99735 1.00226 1.19883 0.94233 0.93861 1.01034 1.20933 0.88264 0.92251 0.90297 1.22252 1.01473 1.01976 0.95546 1.23320 0.99837 0.97143 0.97936 1.22963 0.95876 1.00583 0.97597 1.20927 0.93862 0.81922 0.92002 0.95215 1.21238 0.99038 1.42325 0.93741 0.94539 1.25962 0.98553 0.93960 0.98939 1.70071 1.15499 1.47514 1.25281 0.86304 0.78748 0.78271 0.82158 1.20719 1.22456 1.10559 1.89179 1.54340 1.31317 1.54443 0.91056 0.89262 0.92080 0.85074 0.83642 0.83407 0.83723 0.90221 0.92141 0.92554 0.88787 0.88644 0.93195 0.90370 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 8.62 71.24 0.61 -4.29 16 2 C -0.08 -2.67 5.79 -19.87 -0.12 -2.79 16 3 C -0.14 -3.80 9.68 22.27 0.22 -3.58 16 4 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 5 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 6 C -0.13 -3.39 8.98 22.27 0.20 -3.19 16 7 C -0.09 -2.93 4.92 -19.87 -0.10 -3.03 16 8 C 0.12 4.19 0.70 -11.17 -0.01 4.18 16 9 C -0.16 -4.58 8.44 71.98 0.61 -3.97 16 10 C -0.15 -4.41 6.01 31.70 0.19 -4.21 16 11 C -0.13 -5.12 6.56 32.01 0.21 -4.91 16 12 C 0.17 7.90 2.50 30.53 0.08 7.97 16 13 H 0.03 1.38 7.68 -2.39 -0.02 1.36 16 14 C -0.53 -30.92 9.41 25.60 0.24 -30.68 16 15 H 0.04 2.36 8.02 -2.91 -0.02 2.34 16 16 C 0.02 1.48 5.47 84.66 0.46 1.95 16 17 N -0.94 -60.68 13.96 21.45 0.30 -60.38 16 18 Si 0.92 44.90 26.83 68.60 1.84 46.74 16 19 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 21 H -0.18 -8.11 3.89 99.48 0.39 -7.72 16 22 O -0.37 -16.44 4.96 -148.98 -0.74 -17.18 16 23 H 0.07 2.19 7.09 -2.39 -0.02 2.17 16 24 H 0.09 3.70 2.95 -2.39 -0.01 3.69 16 25 H 0.06 1.92 8.04 -2.38 -0.02 1.90 16 26 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 28 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.15 3.26 5.54 -2.91 -0.02 3.24 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.71 6.14 -2.39 -0.01 1.70 16 33 H 0.09 2.34 7.70 -2.39 -0.02 2.32 16 34 H 0.10 2.53 4.84 -2.39 -0.01 2.52 16 35 H 0.05 2.09 8.05 -2.39 -0.02 2.07 16 36 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.27 16.03 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -69.50 283.98 5.18 -64.32 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.74 Total: 18.50 kcal Atomic # 6 Polarization: -55.05 SS G_CDS: 3.04 Total: -52.00 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.30 Total: -60.38 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.74 Total: -17.18 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.84 Total: 46.74 kcal Total: -69.50 5.18 -64.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309488540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.574 kcal (2) G-P(sol) polarization free energy of solvation -69.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds