Wall clock time and date at job start Mon Mar 30 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38252 * 120.00382 * 2 1 4 4 C 1.38214 * 120.00491 * 180.29533 * 3 2 1 5 5 C 1.38264 * 119.99644 * 359.70285 * 4 3 2 6 6 C 1.38217 * 119.99811 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99963 * 179.74862 * 2 1 3 8 8 C 1.50701 * 119.99583 * 359.97438 * 7 2 1 9 9 C 1.52995 * 109.82495 * 301.82013 * 8 7 2 10 10 C 1.54380 * 109.83172 * 62.71012 * 8 7 2 11 11 C 1.55306 * 102.43623 * 140.85713 * 10 8 7 12 12 C 1.55213 * 100.82786 * 326.11152 * 11 10 8 13 13 H 1.09000 * 110.12616 * 277.29106 * 12 11 10 14 14 C 1.50696 * 110.45533 * 155.24415 * 12 11 10 15 15 H 1.08004 * 119.99911 * 2.60102 * 14 12 11 16 16 C 1.37879 * 120.00181 * 182.59660 * 14 12 11 17 17 N 1.31515 * 119.99665 * 0.02562 * 16 14 12 18 18 Si 1.86791 * 119.99983 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47242 * 60.00299 * 18 16 14 20 20 H 1.48507 * 109.47027 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47355 * 300.00169 * 18 16 14 22 22 O 1.43237 * 109.90055 * 180.89021 * 8 7 2 23 23 H 1.08997 * 109.47938 * 266.07294 * 1 2 3 24 24 H 1.09002 * 109.47189 * 26.07412 * 1 2 3 25 25 H 1.09000 * 109.47650 * 146.06819 * 1 2 3 26 26 H 1.08012 * 119.99909 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.00566 * 179.72639 * 4 3 2 28 28 H 1.07996 * 119.99825 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.99715 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47378 * 180.88993 * 9 8 7 31 31 H 1.09010 * 109.47345 * 300.88730 * 9 8 7 32 32 H 1.09001 * 109.47164 * 60.88856 * 9 8 7 33 33 H 1.08994 * 110.84654 * 259.14809 * 10 8 7 34 34 H 1.08998 * 110.84388 * 22.56601 * 10 8 7 35 35 H 1.09000 * 111.12621 * 83.88800 * 11 10 8 36 36 H 1.08999 * 111.12315 * 208.04966 * 11 10 8 37 37 H 0.96998 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0062 5 6 4.2717 -0.0001 -0.0061 6 6 3.5805 -1.1971 -0.0005 7 6 2.1980 -1.1970 0.0053 8 6 1.4444 -2.5020 0.0116 9 6 0.5282 -2.5662 1.2352 10 6 0.6054 -2.6286 -1.2781 11 6 0.7655 -4.1315 -1.6352 12 6 2.2160 -4.3938 -1.1489 13 1 2.9296 -4.0780 -1.9099 14 6 2.4076 -5.8535 -0.8270 15 1 1.6008 -6.5528 -0.9896 16 6 3.6130 -6.2962 -0.3249 17 7 4.5953 -5.4445 -0.1264 18 14 3.8508 -8.1056 0.0735 19 1 3.6566 -8.9132 -1.1575 20 1 5.2245 -8.3213 0.5949 21 1 2.8606 -8.5209 1.0992 22 8 2.3668 -3.5976 0.0372 23 1 -0.3635 -0.0704 1.0252 24 1 -0.3634 0.9231 -0.4517 25 1 -0.3634 -0.8526 -0.5736 26 1 1.6583 2.1327 0.0004 27 1 4.1204 2.1325 -0.0106 28 1 5.3516 -0.0001 -0.0114 29 1 4.1205 -2.1324 -0.0008 30 1 -0.0020 -3.5186 1.2426 31 1 1.1264 -2.4764 2.1421 32 1 -0.1924 -1.7495 1.1928 33 1 -0.4395 -2.3845 -1.0866 34 1 1.0111 -1.9968 -2.0683 35 1 0.0513 -4.7442 -1.0852 36 1 0.6728 -4.2921 -2.7093 37 1 5.4434 -5.7561 0.2265 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309488545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:16 Heat of formation + Delta-G solvation = -23.139929 kcal Electronic energy + Delta-G solvation = -18427.056129 eV Core-core repulsion = 15748.080087 eV Total energy + Delta-G solvation = -2678.976042 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82423 -37.57962 -33.58728 -32.45688 -31.08021 -30.75615 -28.88304 -26.84344 -26.41177 -23.67959 -21.96971 -21.00147 -20.27590 -19.25788 -16.53924 -16.15584 -15.32418 -14.90996 -14.55180 -14.26342 -13.73834 -13.66519 -13.27946 -12.90414 -12.54482 -12.37849 -12.17674 -11.99182 -11.60410 -11.42634 -11.28908 -10.95469 -10.86910 -10.59050 -10.51828 -10.21045 -10.06932 -9.96135 -9.73542 -9.05887 -8.55774 -8.28882 -8.14509 -7.87549 -5.99764 -4.11963 1.79593 1.90761 3.32936 3.37680 3.39868 4.22621 4.43349 4.90585 5.17491 5.22246 5.35696 5.42802 5.47834 5.54775 5.62228 5.65247 5.79581 5.89431 5.93168 6.09280 6.13631 6.23431 6.31097 6.37507 6.47037 6.57036 6.62324 6.65535 6.68668 6.78509 6.90176 6.94520 7.13552 7.27682 7.55438 7.61732 7.90275 8.27849 8.65071 9.04812 9.58626 11.07861 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030322 B = 0.007293 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.195311 B = 3838.299675 C = 4408.930214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.133 4.133 4 C -0.131 4.131 5 C -0.132 4.132 6 C -0.087 4.087 7 C -0.077 4.077 8 C 0.136 3.864 9 C -0.155 4.155 10 C -0.143 4.143 11 C -0.148 4.148 12 C 0.212 3.788 13 H 0.026 0.974 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.079 3.921 17 N -0.863 5.863 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 O -0.341 6.341 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.146 0.854 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 10.756 -0.128 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.105 4.105 7 C -0.077 4.077 8 C 0.095 3.905 9 C -0.212 4.212 10 C -0.180 4.180 11 C -0.186 4.186 12 C 0.157 3.843 13 H 0.044 0.956 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.127 4.127 17 N -0.499 5.499 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 O -0.261 6.261 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.163 0.837 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.695 10.736 0.092 12.153 hybrid contribution 0.193 -0.792 0.141 0.827 sum -5.502 9.944 0.233 11.367 Atomic orbital electron populations 1.21248 0.92113 1.02870 1.02239 1.19619 0.95619 0.92583 1.00849 1.20835 0.94199 0.96844 1.03224 1.21008 0.94266 0.97639 1.01954 1.21168 0.99628 0.92629 1.01599 1.21428 0.94179 0.99041 0.95834 1.20279 0.94318 0.94359 0.98737 1.20622 0.89278 0.86482 0.94136 1.22267 0.99058 1.01799 0.98061 1.23202 0.99203 0.98325 0.97296 1.23383 1.01293 0.93528 1.00362 1.20546 0.88951 0.90726 0.84114 0.95646 1.21058 0.98613 0.91449 1.46062 0.92038 1.25043 0.95862 0.97398 0.94371 1.70005 1.03411 1.33976 1.42469 0.86705 0.77254 0.85453 0.78795 1.20176 1.21215 1.20140 1.88847 1.56246 1.36681 1.44282 0.91198 0.92482 0.89994 0.86935 0.86981 0.86637 0.83666 0.92155 0.92674 0.91748 0.91240 0.91676 0.91562 0.91992 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.07 36.00 0.29 -1.38 16 2 C -0.09 -1.39 5.68 -104.63 -0.59 -1.99 16 3 C -0.13 -1.96 9.69 -39.58 -0.38 -2.34 16 4 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 5 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 6 C -0.09 -1.75 9.39 -39.58 -0.37 -2.12 16 7 C -0.08 -1.46 4.62 -104.62 -0.48 -1.95 16 8 C 0.14 2.73 0.96 -91.05 -0.09 2.65 16 9 C -0.15 -2.77 8.41 37.16 0.31 -2.46 16 10 C -0.14 -2.58 4.54 -24.79 -0.11 -2.69 16 11 C -0.15 -3.05 6.57 -24.34 -0.16 -3.21 16 12 C 0.21 5.43 3.26 -26.71 -0.09 5.34 16 13 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 14 C -0.53 -14.91 8.82 -34.44 -0.30 -15.21 16 15 H 0.06 1.66 7.77 -52.48 -0.41 1.26 16 16 C 0.08 2.23 5.42 -17.82 -0.10 2.13 16 17 N -0.86 -25.28 12.93 55.43 0.72 -24.56 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 O -0.34 -8.68 8.39 -35.23 -0.30 -8.97 16 23 H 0.07 0.84 6.79 -51.93 -0.35 0.49 16 24 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 25 H 0.08 1.08 3.80 -51.93 -0.20 0.88 16 26 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.15 3.39 7.03 -52.48 -0.37 3.02 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.06 0.94 4.35 -51.93 -0.23 0.72 16 33 H 0.07 1.06 6.12 -51.93 -0.32 0.74 16 34 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 35 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 292.56 15.07 4.41 4.41 Total: -1.00 -29.96 292.56 -8.27 -38.23 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.21 Total: 2.76 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -2.87 Total: -28.20 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: 0.72 Total: -24.56 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.30 Total: -8.97 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.96 -8.27 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309488545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.088 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds