Wall clock time and date at job start Mon Mar 30 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38252 * 120.00382 * 2 1 4 4 C 1.38214 * 120.00491 * 180.29533 * 3 2 1 5 5 C 1.38264 * 119.99644 * 359.70285 * 4 3 2 6 6 C 1.38217 * 119.99811 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99963 * 179.74862 * 2 1 3 8 8 C 1.50701 * 119.99583 * 359.97438 * 7 2 1 9 9 C 1.52995 * 109.82495 * 301.82013 * 8 7 2 10 10 C 1.54380 * 109.83172 * 62.71012 * 8 7 2 11 11 C 1.55306 * 102.43623 * 140.85713 * 10 8 7 12 12 C 1.55213 * 100.82786 * 326.11152 * 11 10 8 13 13 H 1.09000 * 110.12616 * 277.29106 * 12 11 10 14 14 C 1.50696 * 110.45533 * 155.24415 * 12 11 10 15 15 H 1.08004 * 119.99911 * 2.60102 * 14 12 11 16 16 C 1.37879 * 120.00181 * 182.59660 * 14 12 11 17 17 N 1.31515 * 119.99665 * 0.02562 * 16 14 12 18 18 Si 1.86791 * 119.99983 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47242 * 60.00299 * 18 16 14 20 20 H 1.48507 * 109.47027 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47355 * 300.00169 * 18 16 14 22 22 O 1.43237 * 109.90055 * 180.89021 * 8 7 2 23 23 H 1.08997 * 109.47938 * 266.07294 * 1 2 3 24 24 H 1.09002 * 109.47189 * 26.07412 * 1 2 3 25 25 H 1.09000 * 109.47650 * 146.06819 * 1 2 3 26 26 H 1.08012 * 119.99909 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.00566 * 179.72639 * 4 3 2 28 28 H 1.07996 * 119.99825 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.99715 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47378 * 180.88993 * 9 8 7 31 31 H 1.09010 * 109.47345 * 300.88730 * 9 8 7 32 32 H 1.09001 * 109.47164 * 60.88856 * 9 8 7 33 33 H 1.08994 * 110.84654 * 259.14809 * 10 8 7 34 34 H 1.08998 * 110.84388 * 22.56601 * 10 8 7 35 35 H 1.09000 * 111.12621 * 83.88800 * 11 10 8 36 36 H 1.08999 * 111.12315 * 208.04966 * 11 10 8 37 37 H 0.96998 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0062 5 6 4.2717 -0.0001 -0.0061 6 6 3.5805 -1.1971 -0.0005 7 6 2.1980 -1.1970 0.0053 8 6 1.4444 -2.5020 0.0116 9 6 0.5282 -2.5662 1.2352 10 6 0.6054 -2.6286 -1.2781 11 6 0.7655 -4.1315 -1.6352 12 6 2.2160 -4.3938 -1.1489 13 1 2.9296 -4.0780 -1.9099 14 6 2.4076 -5.8535 -0.8270 15 1 1.6008 -6.5528 -0.9896 16 6 3.6130 -6.2962 -0.3249 17 7 4.5953 -5.4445 -0.1264 18 14 3.8508 -8.1056 0.0735 19 1 3.6566 -8.9132 -1.1575 20 1 5.2245 -8.3213 0.5949 21 1 2.8606 -8.5209 1.0992 22 8 2.3668 -3.5976 0.0372 23 1 -0.3635 -0.0704 1.0252 24 1 -0.3634 0.9231 -0.4517 25 1 -0.3634 -0.8526 -0.5736 26 1 1.6583 2.1327 0.0004 27 1 4.1204 2.1325 -0.0106 28 1 5.3516 -0.0001 -0.0114 29 1 4.1205 -2.1324 -0.0008 30 1 -0.0020 -3.5186 1.2426 31 1 1.1264 -2.4764 2.1421 32 1 -0.1924 -1.7495 1.1928 33 1 -0.4395 -2.3845 -1.0866 34 1 1.0111 -1.9968 -2.0683 35 1 0.0513 -4.7442 -1.0852 36 1 0.6728 -4.2921 -2.7093 37 1 5.4434 -5.7561 0.2265 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309488545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:16 Heat of formation + Delta-G solvation = -39.912972 kcal Electronic energy + Delta-G solvation = -18427.783463 eV Core-core repulsion = 15748.080087 eV Total energy + Delta-G solvation = -2679.703376 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27900 -39.11305 -35.23681 -34.24470 -32.64473 -32.34728 -30.34338 -28.43089 -27.84511 -25.40867 -23.47291 -22.29916 -22.04191 -20.72954 -18.63302 -17.59755 -16.89706 -16.61595 -16.19182 -15.66186 -15.35578 -14.93232 -14.67959 -14.34290 -14.15382 -13.84465 -13.78343 -13.56094 -13.07626 -12.91445 -12.75935 -12.62536 -12.42279 -12.34896 -12.07242 -11.90289 -11.57837 -11.47585 -11.31774 -10.93493 -10.68942 -9.90285 -9.58956 -9.33459 -8.14027 -6.34765 0.51851 0.59008 1.38872 1.42010 1.49385 2.40153 2.90974 3.06073 3.56320 3.77458 3.96729 4.08076 4.11024 4.20179 4.32130 4.42747 4.48729 4.57826 4.66500 4.71973 4.81584 4.87495 4.94339 4.97336 5.05010 5.09473 5.14780 5.15999 5.27609 5.37776 5.47567 5.58506 5.66367 5.73674 5.80009 5.93033 6.19146 6.24930 6.62827 7.10947 7.41485 8.93463 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030322 B = 0.007293 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.195311 B = 3838.299675 C = 4408.930214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.123 4.123 5 C -0.142 4.142 6 C -0.125 4.125 7 C -0.099 4.099 8 C 0.121 3.879 9 C -0.149 4.149 10 C -0.128 4.128 11 C -0.141 4.141 12 C 0.205 3.795 13 H -0.018 1.018 14 C -0.556 4.556 15 H 0.066 0.934 16 C 0.022 3.978 17 N -0.900 5.900 18 Si 0.961 3.039 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.270 1.270 22 O -0.376 6.376 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.154 0.846 27 H 0.149 0.851 28 H 0.123 0.877 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 12.801 -0.038 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.160 4.160 6 C -0.143 4.143 7 C -0.099 4.099 8 C 0.080 3.920 9 C -0.205 4.205 10 C -0.165 4.165 11 C -0.178 4.178 12 C 0.150 3.850 13 H 0.000 1.000 14 C -0.593 4.593 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.537 5.537 18 Si 0.785 3.215 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.195 1.195 22 O -0.296 6.296 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.172 0.828 27 H 0.167 0.833 28 H 0.141 0.859 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.161 12.781 0.175 15.165 hybrid contribution 0.976 -1.310 0.108 1.637 sum -7.185 11.471 0.284 13.538 Atomic orbital electron populations 1.21310 0.89419 1.04416 1.03349 1.19967 0.97565 0.91599 0.99497 1.21345 0.94227 0.97898 1.00875 1.21412 0.94909 0.97812 0.99941 1.21300 1.00275 0.92576 1.01858 1.21160 0.95245 0.98218 0.99665 1.20288 0.93808 0.95249 1.00576 1.20994 0.89249 0.85606 0.96102 1.22262 0.99015 1.03066 0.96203 1.23163 1.01111 0.96134 0.96089 1.23268 0.97735 0.95715 1.01105 1.20367 0.91108 0.89941 0.83621 1.00047 1.21508 0.98934 0.93055 1.45845 0.91612 1.25956 0.95597 1.02129 0.94276 1.70184 1.03811 1.36126 1.43615 0.85600 0.77155 0.79801 0.78963 1.18830 1.20999 1.19480 1.88759 1.58458 1.38606 1.43788 0.89801 0.89454 0.90232 0.82825 0.83318 0.85861 0.89019 0.92782 0.94431 0.87744 0.87225 0.91657 0.91144 0.90595 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.07 71.23 0.57 -2.16 16 2 C -0.09 -2.52 5.68 -19.87 -0.11 -2.64 16 3 C -0.13 -3.18 9.69 22.27 0.22 -2.97 16 4 C -0.12 -3.32 10.05 22.27 0.22 -3.10 16 5 C -0.14 -4.89 10.05 22.27 0.22 -4.67 16 6 C -0.12 -5.35 9.39 22.27 0.21 -5.14 16 7 C -0.10 -3.81 4.62 -19.87 -0.09 -3.90 16 8 C 0.12 4.92 0.96 -11.07 -0.01 4.91 16 9 C -0.15 -5.19 8.41 71.98 0.61 -4.59 16 10 C -0.13 -4.46 4.54 31.85 0.14 -4.31 16 11 C -0.14 -5.82 6.57 32.15 0.21 -5.61 16 12 C 0.21 11.12 3.26 30.61 0.10 11.22 16 13 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 14 C -0.56 -32.30 8.82 25.60 0.23 -32.08 16 15 H 0.07 3.64 7.77 -2.91 -0.02 3.62 16 16 C 0.02 1.32 5.42 84.65 0.46 1.77 16 17 N -0.90 -56.07 12.93 21.45 0.28 -55.79 16 18 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 O -0.38 -20.35 8.39 -148.98 -1.25 -21.60 16 23 H 0.08 1.58 6.79 -2.39 -0.02 1.56 16 24 H 0.09 1.37 8.06 -2.39 -0.02 1.35 16 25 H 0.08 1.72 3.80 -2.39 -0.01 1.72 16 26 H 0.15 2.68 8.06 -2.90 -0.02 2.66 16 27 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 28 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 29 H 0.09 4.85 7.03 -2.91 -0.02 4.83 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 32 H 0.10 2.73 4.35 -2.39 -0.01 2.72 16 33 H 0.11 2.93 6.12 -2.39 -0.01 2.91 16 34 H 0.06 2.26 7.84 -2.39 -0.02 2.24 16 35 H 0.07 2.83 8.05 -2.39 -0.02 2.81 16 36 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -70.91 292.56 5.08 -65.83 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.05 Total: 17.63 kcal Atomic # 6 Polarization: -56.24 SS G_CDS: 2.98 Total: -53.26 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.28 Total: -55.79 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.25 Total: -21.60 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -70.91 5.08 -65.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309488545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.913 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds