Wall clock time and date at job start Mon Mar 30 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00264 * 2 1 4 4 C 1.38234 * 120.00244 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99789 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99864 * 359.95693 * 4 3 2 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 4 3 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 4 9 9 H 1.08991 * 109.82354 * 25.69770 * 8 7 6 10 10 C 1.54389 * 109.82599 * 264.81211 * 8 7 6 11 11 C 1.55453 * 102.18332 * 219.18199 * 10 8 7 12 12 C 1.54947 * 100.98936 * 34.04069 * 11 10 8 13 13 H 1.09003 * 110.39091 * 82.56519 * 12 11 10 14 14 C 1.50706 * 110.30689 * 204.68867 * 12 11 10 15 15 H 1.08001 * 120.00027 * 357.17151 * 14 12 11 16 16 C 1.37877 * 119.99711 * 177.16644 * 14 12 11 17 17 N 1.31512 * 120.00061 * 180.02562 * 16 14 12 18 18 Si 1.86806 * 120.00170 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.46982 * 89.99798 * 18 16 14 20 20 H 1.48496 * 109.47027 * 210.00122 * 18 16 14 21 21 H 1.48498 * 109.46980 * 330.00225 * 18 16 14 22 22 O 1.43240 * 109.83039 * 146.58759 * 8 7 6 23 23 C 1.38234 * 119.99814 * 359.97438 * 7 6 4 24 24 H 1.09000 * 109.46827 * 90.00288 * 1 2 3 25 25 H 1.09003 * 109.47455 * 209.99996 * 1 2 3 26 26 H 1.08989 * 109.47334 * 330.00586 * 1 2 3 27 27 H 1.07999 * 119.99747 * 359.97084 * 3 2 1 28 28 H 1.09001 * 109.47242 * 269.97350 * 5 4 3 29 29 H 1.08999 * 109.47144 * 29.97997 * 5 4 3 30 30 H 1.09000 * 109.47061 * 149.97941 * 5 4 3 31 31 H 1.08000 * 120.00356 * 179.97438 * 6 4 3 32 32 H 1.08995 * 110.84967 * 337.31657 * 10 8 7 33 33 H 1.08994 * 110.84636 * 100.93938 * 10 8 7 34 34 H 1.09005 * 111.05617 * 276.12179 * 11 10 8 35 35 H 1.08997 * 111.14377 * 151.99988 * 11 10 8 36 36 H 0.97001 * 120.00293 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00279 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0020 7 6 3.5806 -1.1972 0.0023 8 6 4.3340 -2.5023 -0.0028 9 1 5.3206 -2.3613 0.4384 10 6 4.4768 -3.0188 -1.4507 11 6 4.2662 -4.5490 -1.2754 12 6 3.2331 -4.5747 -0.1209 13 1 2.2260 -4.4222 -0.5090 14 6 3.3134 -5.8824 0.6238 15 1 3.9933 -6.6526 0.2908 16 6 2.5189 -6.0954 1.7304 17 7 2.5893 -7.2363 2.3806 18 14 1.3425 -4.7633 2.3060 19 1 0.0287 -4.9404 1.6369 20 1 1.1660 -4.8608 3.7772 21 1 1.8977 -3.4299 1.9613 22 8 3.6056 -3.4869 0.7401 23 6 2.1982 -1.1972 0.0018 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5137 27 1 1.6582 2.1324 -0.0005 28 1 4.5165 2.8160 -1.0279 29 1 3.7446 3.2623 0.5127 30 1 5.2861 2.3723 0.5146 31 1 5.3517 -0.0001 0.0020 32 1 3.7059 -2.5925 -2.0925 33 1 5.4712 -2.8051 -1.8425 34 1 5.1940 -5.0411 -0.9835 35 1 3.8549 -4.9955 -2.1807 36 1 2.0306 -7.3861 3.1593 37 1 1.6582 -2.1325 0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381040484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:35 Heat of formation + Delta-G solvation = -36.555131 kcal Electronic energy + Delta-G solvation = -17946.480506 eV Core-core repulsion = 15266.922737 eV Total energy + Delta-G solvation = -2679.557769 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70436 -38.00822 -33.36771 -32.99331 -31.99603 -31.11030 -28.61408 -27.16455 -26.48232 -24.69746 -22.01908 -20.56844 -20.33619 -19.65701 -16.86471 -16.21003 -15.93275 -15.25351 -14.75117 -14.41263 -13.92878 -13.62020 -13.26394 -13.17478 -12.80204 -12.58445 -12.51874 -12.39485 -12.09068 -11.84106 -11.73434 -11.22504 -11.03519 -10.81606 -10.73751 -10.48904 -10.25169 -9.87669 -9.67385 -9.39608 -8.55529 -8.40417 -8.31177 -8.12042 -6.09071 -4.17393 1.58987 1.62892 3.39150 3.46219 3.72202 3.92591 4.55568 4.79401 4.89501 5.00963 5.05192 5.31905 5.34208 5.38350 5.42634 5.48148 5.55773 5.63836 5.69321 5.70644 5.78477 5.84100 5.95627 6.06132 6.12559 6.17291 6.34367 6.39164 6.44911 6.57427 6.65224 6.75396 6.83097 7.00765 7.23480 7.28809 7.63176 8.30301 8.44980 8.92345 9.55401 11.01469 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.007640 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.323045 B = 3664.014998 C = 4298.843361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.091 4.091 5 C -0.109 4.109 6 C -0.123 4.123 7 C -0.074 4.074 8 C 0.109 3.891 9 H 0.073 0.927 10 C -0.145 4.145 11 C -0.135 4.135 12 C 0.171 3.829 13 H 0.026 0.974 14 C -0.524 4.524 15 H 0.078 0.922 16 C 0.084 3.916 17 N -0.893 5.893 18 Si 0.862 3.138 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.216 1.216 22 O -0.366 6.366 23 C -0.101 4.101 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.265 0.735 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.385 17.278 -6.699 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.141 4.141 7 C -0.074 4.074 8 C 0.050 3.950 9 H 0.091 0.909 10 C -0.183 4.183 11 C -0.173 4.173 12 C 0.116 3.884 13 H 0.043 0.957 14 C -0.560 4.560 15 H 0.096 0.904 16 C -0.120 4.120 17 N -0.531 5.531 18 Si 0.689 3.311 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.139 1.139 22 O -0.287 6.287 23 C -0.119 4.119 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.275 17.191 -6.339 18.325 hybrid contribution -0.569 0.462 0.264 0.779 sum -0.294 17.653 -6.076 18.671 Atomic orbital electron populations 1.20775 0.91537 1.02624 1.02062 1.19900 0.95885 0.93150 0.99970 1.20770 0.93456 0.97119 1.03506 1.19768 0.93775 0.94969 1.00617 1.20732 0.99765 0.94208 1.01888 1.20783 0.99390 0.91364 1.02598 1.20442 0.94300 0.95301 0.97355 1.21462 0.94276 0.86931 0.92309 0.90921 1.23144 1.01524 0.97449 0.96176 1.23179 1.01109 0.93373 0.99589 1.20973 0.92740 0.86506 0.88151 0.95685 1.21042 1.24452 0.97159 1.13388 0.90406 1.25033 0.96437 0.95090 0.95416 1.69923 1.39697 1.24137 1.19301 0.87103 0.80383 0.86063 0.77572 1.21139 1.21834 1.13916 1.88947 1.73086 1.31046 1.35579 1.20994 0.93960 0.97638 0.99264 0.91385 0.91472 0.91861 0.86721 0.91561 0.91920 0.91749 0.86433 0.91456 0.91260 0.90889 0.91478 0.92566 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 36.01 0.36 -1.06 16 2 C -0.09 -1.36 5.88 -104.62 -0.62 -1.98 16 3 C -0.13 -1.79 9.36 -39.58 -0.37 -2.16 16 4 C -0.09 -1.23 5.88 -104.63 -0.62 -1.85 16 5 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 6 C -0.12 -1.85 9.35 -39.59 -0.37 -2.22 16 7 C -0.07 -1.30 4.87 -104.62 -0.51 -1.81 16 8 C 0.11 2.07 3.74 -27.15 -0.10 1.96 16 9 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 10 C -0.15 -2.44 6.55 -24.70 -0.16 -2.60 16 11 C -0.13 -2.65 6.53 -24.40 -0.16 -2.81 16 12 C 0.17 4.10 2.69 -26.85 -0.07 4.03 16 13 H 0.03 0.61 7.63 -51.93 -0.40 0.21 16 14 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 15 H 0.08 2.37 8.01 -52.49 -0.42 1.95 16 16 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 17 N -0.89 -27.76 13.96 55.43 0.77 -26.99 16 18 Si 0.86 22.10 27.07 -169.99 -4.60 17.50 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 21 H -0.22 -5.39 5.23 56.52 0.30 -5.09 16 22 O -0.37 -8.67 6.83 -35.23 -0.24 -8.91 16 23 C -0.10 -1.81 9.02 -39.58 -0.36 -2.16 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 26 H 0.06 0.67 8.08 -51.94 -0.42 0.25 16 27 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.07 1.08 7.84 -51.93 -0.41 0.68 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.46 8.05 -51.93 -0.42 1.05 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.12 2.44 7.46 -52.49 -0.39 2.05 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -31.61 302.44 -8.45 -40.06 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.91 Total: 0.07 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -3.03 Total: -26.29 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.99 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.24 Total: -8.91 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.60 Total: 17.50 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.61 -8.45 -40.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381040484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.505 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds