Wall clock time and date at job start Mon Mar 30 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00264 * 2 1 4 4 C 1.38234 * 120.00244 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99789 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99864 * 359.95693 * 4 3 2 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 4 3 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 4 9 9 H 1.08991 * 109.82354 * 25.69770 * 8 7 6 10 10 C 1.54389 * 109.82599 * 264.81211 * 8 7 6 11 11 C 1.55453 * 102.18332 * 219.18199 * 10 8 7 12 12 C 1.54947 * 100.98936 * 34.04069 * 11 10 8 13 13 H 1.09003 * 110.39091 * 82.56519 * 12 11 10 14 14 C 1.50706 * 110.30689 * 204.68867 * 12 11 10 15 15 H 1.08001 * 120.00027 * 357.17151 * 14 12 11 16 16 C 1.37877 * 119.99711 * 177.16644 * 14 12 11 17 17 N 1.31512 * 120.00061 * 180.02562 * 16 14 12 18 18 Si 1.86806 * 120.00170 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.46982 * 89.99798 * 18 16 14 20 20 H 1.48496 * 109.47027 * 210.00122 * 18 16 14 21 21 H 1.48498 * 109.46980 * 330.00225 * 18 16 14 22 22 O 1.43240 * 109.83039 * 146.58759 * 8 7 6 23 23 C 1.38234 * 119.99814 * 359.97438 * 7 6 4 24 24 H 1.09000 * 109.46827 * 90.00288 * 1 2 3 25 25 H 1.09003 * 109.47455 * 209.99996 * 1 2 3 26 26 H 1.08989 * 109.47334 * 330.00586 * 1 2 3 27 27 H 1.07999 * 119.99747 * 359.97084 * 3 2 1 28 28 H 1.09001 * 109.47242 * 269.97350 * 5 4 3 29 29 H 1.08999 * 109.47144 * 29.97997 * 5 4 3 30 30 H 1.09000 * 109.47061 * 149.97941 * 5 4 3 31 31 H 1.08000 * 120.00356 * 179.97438 * 6 4 3 32 32 H 1.08995 * 110.84967 * 337.31657 * 10 8 7 33 33 H 1.08994 * 110.84636 * 100.93938 * 10 8 7 34 34 H 1.09005 * 111.05617 * 276.12179 * 11 10 8 35 35 H 1.08997 * 111.14377 * 151.99988 * 11 10 8 36 36 H 0.97001 * 120.00293 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00279 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0020 7 6 3.5806 -1.1972 0.0023 8 6 4.3340 -2.5023 -0.0028 9 1 5.3206 -2.3613 0.4384 10 6 4.4768 -3.0188 -1.4507 11 6 4.2662 -4.5490 -1.2754 12 6 3.2331 -4.5747 -0.1209 13 1 2.2260 -4.4222 -0.5090 14 6 3.3134 -5.8824 0.6238 15 1 3.9933 -6.6526 0.2908 16 6 2.5189 -6.0954 1.7304 17 7 2.5893 -7.2363 2.3806 18 14 1.3425 -4.7633 2.3060 19 1 0.0287 -4.9404 1.6369 20 1 1.1660 -4.8608 3.7772 21 1 1.8977 -3.4299 1.9613 22 8 3.6056 -3.4869 0.7401 23 6 2.1982 -1.1972 0.0018 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5137 27 1 1.6582 2.1324 -0.0005 28 1 4.5165 2.8160 -1.0279 29 1 3.7446 3.2623 0.5127 30 1 5.2861 2.3723 0.5146 31 1 5.3517 -0.0001 0.0020 32 1 3.7059 -2.5925 -2.0925 33 1 5.4712 -2.8051 -1.8425 34 1 5.1940 -5.0411 -0.9835 35 1 3.8549 -4.9955 -2.1807 36 1 2.0306 -7.3861 3.1593 37 1 1.6582 -2.1325 0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381040484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:35 Heat of formation + Delta-G solvation = -54.306847 kcal Electronic energy + Delta-G solvation = -17947.250278 eV Core-core repulsion = 15266.922737 eV Total energy + Delta-G solvation = -2680.327541 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01307 -39.47409 -34.94130 -34.37446 -33.57324 -32.72782 -30.28958 -28.17643 -27.52577 -26.46498 -23.50721 -22.10676 -21.62075 -21.03553 -18.97263 -17.56308 -17.39847 -16.82394 -16.26720 -15.82344 -15.33434 -14.85845 -14.73665 -14.54899 -14.14819 -13.98499 -13.75351 -13.70481 -13.32485 -13.06911 -12.88286 -12.73273 -12.65728 -12.31431 -12.19408 -11.89709 -11.76695 -11.61234 -11.48987 -11.31808 -10.77231 -10.10047 -9.44059 -9.40475 -8.37827 -6.49589 0.45097 0.48554 1.31563 1.35609 1.66612 2.39859 2.73837 2.95708 3.54254 3.72271 3.82012 3.94912 3.98859 4.17181 4.29352 4.35012 4.46159 4.53747 4.54484 4.63404 4.72824 4.77946 4.80943 4.89391 4.91148 5.00136 5.06964 5.08636 5.12773 5.27468 5.37665 5.44274 5.51782 5.68449 5.69653 5.81453 6.17138 6.18782 6.46774 6.72458 7.27590 8.76311 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.007640 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.323045 B = 3664.014998 C = 4298.843361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.130 4.130 4 C -0.087 4.087 5 C -0.107 4.107 6 C -0.130 4.130 7 C -0.092 4.092 8 C 0.099 3.901 9 H 0.080 0.920 10 C -0.128 4.128 11 C -0.133 4.133 12 C 0.172 3.828 13 H 0.023 0.977 14 C -0.531 4.531 15 H 0.043 0.957 16 C 0.029 3.971 17 N -0.940 5.940 18 Si 0.926 3.074 19 H -0.275 1.275 20 H -0.295 1.295 21 H -0.209 1.209 22 O -0.392 6.392 23 C -0.132 4.132 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.267 0.733 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 21.138 -7.710 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.087 4.087 5 C -0.164 4.164 6 C -0.148 4.148 7 C -0.092 4.092 8 C 0.041 3.959 9 H 0.098 0.902 10 C -0.165 4.165 11 C -0.170 4.170 12 C 0.116 3.884 13 H 0.041 0.959 14 C -0.568 4.568 15 H 0.062 0.938 16 C -0.170 4.170 17 N -0.579 5.579 18 Si 0.750 3.250 19 H -0.201 1.201 20 H -0.222 1.222 21 H -0.131 1.131 22 O -0.313 6.313 23 C -0.151 4.151 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.163 0.837 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.299 21.062 -7.369 22.316 hybrid contribution -0.500 -0.695 0.538 1.012 sum -0.200 20.367 -6.831 21.483 Atomic orbital electron populations 1.20827 0.89947 1.03078 1.03118 1.20198 0.97260 0.92851 0.99247 1.21156 0.93857 0.97623 1.02183 1.20227 0.94086 0.95995 0.98426 1.20803 0.99882 0.92451 1.03251 1.21005 1.00388 0.90987 1.02418 1.20349 0.94254 0.95341 0.99288 1.21717 0.94262 0.86781 0.93120 0.90213 1.23076 1.03713 0.94519 0.95196 1.23108 0.99419 0.95995 0.98513 1.20777 0.94063 0.84708 0.88844 0.95935 1.21378 1.23145 0.98885 1.13435 0.93835 1.25873 0.98314 0.97058 0.95777 1.70048 1.41363 1.26189 1.20332 0.86122 0.78579 0.83661 0.76630 1.20063 1.22180 1.13103 1.88812 1.73920 1.31834 1.36711 1.20927 0.94356 0.97671 1.02099 0.89991 0.92817 0.89584 0.83714 0.89969 0.90379 0.90953 0.84641 0.90545 0.88030 0.91785 0.89881 0.92428 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 10.01 71.24 0.71 -1.87 16 2 C -0.10 -2.72 5.88 -19.86 -0.12 -2.83 16 3 C -0.13 -3.10 9.36 22.27 0.21 -2.89 16 4 C -0.09 -2.03 5.88 -19.87 -0.12 -2.15 16 5 C -0.11 -1.63 10.01 71.23 0.71 -0.92 16 6 C -0.13 -3.55 9.35 22.27 0.21 -3.34 16 7 C -0.09 -3.11 4.87 -19.87 -0.10 -3.20 16 8 C 0.10 3.65 3.74 30.32 0.11 3.77 16 9 H 0.08 2.77 8.07 -2.39 -0.02 2.75 16 10 C -0.13 -4.04 6.55 31.91 0.21 -3.83 16 11 C -0.13 -5.15 6.53 32.10 0.21 -4.94 16 12 C 0.17 8.34 2.69 30.52 0.08 8.42 16 13 H 0.02 1.12 7.63 -2.39 -0.02 1.10 16 14 C -0.53 -31.56 9.39 25.60 0.24 -31.32 16 15 H 0.04 2.80 8.01 -2.91 -0.02 2.77 16 16 C 0.03 1.78 5.47 84.65 0.46 2.25 16 17 N -0.94 -60.63 13.96 21.45 0.30 -60.33 16 18 Si 0.93 47.26 27.07 68.60 1.86 49.11 16 19 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 21 H -0.21 -10.34 5.23 99.48 0.52 -9.81 16 22 O -0.39 -18.65 6.83 -148.98 -1.02 -19.67 16 23 C -0.13 -4.64 9.02 22.27 0.20 -4.44 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.35 8.09 -2.39 -0.02 1.33 16 26 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 27 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 30 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.08 2.30 7.84 -2.39 -0.02 2.28 16 33 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.06 2.57 8.05 -2.38 -0.02 2.55 16 35 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 37 H 0.10 3.85 7.46 -2.91 -0.02 3.83 16 Total: -1.00 -70.95 302.44 5.01 -65.94 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.84 Total: 12.24 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 3.03 Total: -47.29 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.30 Total: -60.33 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -1.02 Total: -19.67 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.86 Total: 49.11 kcal Total: -70.95 5.01 -65.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381040484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.631 kcal (2) G-P(sol) polarization free energy of solvation -70.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds