Wall clock time and date at job start Mon Mar 30 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 120.00243 * 2 1 4 4 C 1.38231 * 120.00466 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00385 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00001 * 359.97438 * 4 3 2 7 7 C 1.38242 * 119.99859 * 0.02562 * 6 4 3 8 8 C 1.50698 * 120.00139 * 179.97438 * 7 6 4 9 9 H 1.09006 * 109.86675 * 339.55416 * 8 7 6 10 10 C 1.54102 * 109.87831 * 100.71370 * 8 7 6 11 11 C 1.54806 * 104.18780 * 121.45294 * 10 8 7 12 12 C 1.54998 * 102.08944 * 20.88338 * 11 10 8 13 13 H 1.08998 * 110.75447 * 81.54620 * 12 11 10 14 14 C 1.50703 * 110.61630 * 204.47399 * 12 11 10 15 15 H 1.08006 * 120.00159 * 355.52242 * 14 12 11 16 16 C 1.37877 * 120.00120 * 175.52611 * 14 12 11 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 O 1.43738 * 109.87878 * 218.54375 * 8 7 6 23 23 C 1.38231 * 119.99895 * 0.24881 * 7 6 4 24 24 H 1.08995 * 109.47064 * 89.99913 * 1 2 3 25 25 H 1.08997 * 109.46802 * 210.00499 * 1 2 3 26 26 H 1.09002 * 109.47027 * 330.00168 * 1 2 3 27 27 H 1.08003 * 119.99962 * 0.02562 * 3 2 1 28 28 H 1.09007 * 109.46878 * 270.01810 * 5 4 3 29 29 H 1.08998 * 109.47123 * 30.01303 * 5 4 3 30 30 H 1.08999 * 109.47806 * 150.02200 * 5 4 3 31 31 H 1.07994 * 120.00321 * 179.97438 * 6 4 3 32 32 H 1.09001 * 110.48834 * 240.13487 * 10 8 7 33 33 H 1.09003 * 110.48743 * 2.64622 * 10 8 7 34 34 H 1.08998 * 110.91362 * 262.68169 * 11 10 8 35 35 H 1.09005 * 110.90919 * 139.07832 * 11 10 8 36 36 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 37 37 H 1.08002 * 120.00167 * 179.72578 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2718 0.0001 -0.0005 7 6 3.5806 -1.1972 -0.0005 8 6 4.3341 -2.5023 -0.0011 9 1 5.3510 -2.3427 -0.3596 10 6 4.3633 -3.0911 1.4227 11 6 3.6919 -4.4780 1.2736 12 6 3.8500 -4.7537 -0.2435 13 1 4.8455 -5.1386 -0.4644 14 6 2.7929 -5.7159 -0.7209 15 1 2.1108 -6.1635 -0.0131 16 6 2.6965 -6.0249 -2.0611 17 7 3.5268 -5.4796 -2.9230 18 14 1.3858 -7.2170 -2.6529 19 1 1.9266 -8.5999 -2.6277 20 1 0.9877 -6.8664 -4.0399 21 1 0.2010 -7.1325 -1.7616 22 8 3.6625 -3.4540 -0.8434 23 6 2.1983 -1.1972 -0.0057 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6583 2.1325 0.0004 28 1 4.5150 2.8168 -1.0290 29 1 3.7453 3.2619 0.5130 30 1 5.2869 2.3720 0.5120 31 1 5.3517 0.0000 -0.0014 32 1 5.3909 -3.1999 1.7695 33 1 3.7951 -2.4616 2.1076 34 1 2.6394 -4.4328 1.5532 35 1 4.2174 -5.2299 1.8624 36 1 4.2071 -4.8603 -2.6156 37 1 1.6583 -2.1325 -0.0102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381040489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:39 Heat of formation + Delta-G solvation = -47.847869 kcal Electronic energy + Delta-G solvation = -17800.094216 eV Core-core repulsion = 15120.046757 eV Total energy + Delta-G solvation = -2680.047459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58550 -37.91461 -33.28816 -33.19435 -31.84815 -30.98487 -27.99332 -26.95111 -26.41097 -24.37627 -22.00494 -20.79126 -20.28847 -19.59630 -17.05675 -16.05374 -15.75006 -15.17739 -14.50375 -13.86281 -13.72297 -13.71376 -13.46374 -13.09474 -13.00816 -12.63276 -12.52308 -12.41569 -11.81351 -11.70639 -11.44209 -11.02805 -10.81426 -10.77101 -10.63978 -10.42418 -10.35256 -10.07691 -9.82412 -8.83705 -8.52807 -8.27343 -8.23072 -8.11657 -6.35646 -4.14017 1.65886 1.71193 3.43622 3.48349 3.64066 4.00592 4.53130 4.84924 4.96267 5.08308 5.20092 5.40054 5.41961 5.48662 5.50041 5.55618 5.62333 5.66671 5.75082 5.80145 5.86713 5.91588 6.03679 6.11048 6.22429 6.23918 6.41823 6.49721 6.52576 6.66639 6.67881 6.81738 6.92973 7.08648 7.28473 7.36978 8.04006 8.30942 8.48731 8.88034 9.68365 11.05813 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025834 B = 0.006357 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.562318 B = 4403.398349 C = 4835.173172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.093 4.093 5 C -0.109 4.109 6 C -0.124 4.124 7 C -0.062 4.062 8 C 0.106 3.894 9 H 0.056 0.944 10 C -0.145 4.145 11 C -0.137 4.137 12 C 0.189 3.811 13 H 0.019 0.981 14 C -0.606 4.606 15 H 0.057 0.943 16 C 0.031 3.969 17 N -0.890 5.890 18 Si 1.072 2.928 19 H -0.287 1.287 20 H -0.283 1.283 21 H -0.288 1.288 22 O -0.361 6.361 23 C -0.093 4.093 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.280 0.720 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 12.222 7.417 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.093 4.093 5 C -0.165 4.165 6 C -0.142 4.142 7 C -0.062 4.062 8 C 0.047 3.953 9 H 0.074 0.926 10 C -0.183 4.183 11 C -0.175 4.175 12 C 0.134 3.866 13 H 0.036 0.964 14 C -0.643 4.643 15 H 0.075 0.925 16 C -0.177 4.177 17 N -0.525 5.525 18 Si 0.900 3.100 19 H -0.214 1.214 20 H -0.209 1.209 21 H -0.214 1.214 22 O -0.280 6.280 23 C -0.111 4.111 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.421 11.540 5.880 13.030 hybrid contribution 0.833 0.764 1.574 1.937 sum -0.588 12.304 7.454 14.397 Atomic orbital electron populations 1.20755 0.91476 1.02301 1.02253 1.19909 0.95926 0.93106 1.00023 1.20773 0.93423 0.97159 1.03465 1.19736 0.93790 0.94874 1.00885 1.20726 0.99631 0.94198 1.01985 1.20790 0.99329 0.91429 1.02635 1.20017 0.94201 0.94301 0.97702 1.21414 0.94458 0.88261 0.91163 0.92601 1.22945 1.00611 0.97999 0.96764 1.23076 1.00194 0.94213 1.00050 1.20881 0.96796 0.81932 0.86981 0.96360 1.21887 1.19905 1.26550 0.95932 0.92455 1.25871 0.99991 0.98579 0.93264 1.70636 1.16920 1.27569 1.37345 0.83526 0.75180 0.75362 0.75969 1.21364 1.20912 1.21398 1.89272 1.74153 1.17250 1.47370 1.20999 0.93852 0.97811 0.98399 0.91286 0.91483 0.92061 0.86742 0.91510 0.91953 0.91853 0.86568 0.91855 0.91688 0.91544 0.92136 0.90875 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 36.01 0.36 -1.09 16 2 C -0.09 -1.44 5.88 -104.62 -0.62 -2.05 16 3 C -0.13 -1.89 9.36 -39.58 -0.37 -2.26 16 4 C -0.09 -1.34 5.88 -104.63 -0.62 -1.96 16 5 C -0.11 -1.16 10.01 36.00 0.36 -0.80 16 6 C -0.12 -2.01 9.33 -39.58 -0.37 -2.38 16 7 C -0.06 -1.17 4.76 -104.62 -0.50 -1.67 16 8 C 0.11 2.19 3.63 -27.31 -0.10 2.09 16 9 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 10 C -0.15 -2.68 6.63 -25.20 -0.17 -2.85 16 11 C -0.14 -2.92 6.55 -24.72 -0.16 -3.08 16 12 C 0.19 4.91 2.70 -26.83 -0.07 4.84 16 13 H 0.02 0.51 8.07 -51.93 -0.42 0.09 16 14 C -0.61 -17.34 8.83 -34.44 -0.30 -17.64 16 15 H 0.06 1.61 7.78 -52.48 -0.41 1.20 16 16 C 0.03 0.91 5.42 -17.82 -0.10 0.82 16 17 N -0.89 -27.68 13.56 55.43 0.75 -26.93 16 18 Si 1.07 25.44 29.90 -169.99 -5.08 20.36 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 O -0.36 -9.36 9.04 -35.23 -0.32 -9.68 16 23 C -0.09 -1.76 9.02 -39.58 -0.36 -2.12 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 26 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.12 1.67 8.05 -52.49 -0.42 1.25 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 34 H 0.07 1.43 8.05 -51.93 -0.42 1.01 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.28 8.81 6.59 -40.82 -0.27 8.54 16 37 H 0.13 2.71 7.74 -52.49 -0.41 2.31 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -31.68 306.82 -8.78 -40.46 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.75 Total: 1.31 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -3.01 Total: -30.15 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.75 Total: -26.93 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.32 Total: -9.68 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.68 -8.78 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381040489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.387 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds