Wall clock time and date at job start Mon Mar 30 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 120.00243 * 2 1 4 4 C 1.38231 * 120.00466 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00385 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00001 * 359.97438 * 4 3 2 7 7 C 1.38242 * 119.99859 * 0.02562 * 6 4 3 8 8 C 1.50698 * 120.00139 * 179.97438 * 7 6 4 9 9 H 1.09006 * 109.86675 * 339.55416 * 8 7 6 10 10 C 1.54102 * 109.87831 * 100.71370 * 8 7 6 11 11 C 1.54806 * 104.18780 * 121.45294 * 10 8 7 12 12 C 1.54998 * 102.08944 * 20.88338 * 11 10 8 13 13 H 1.08998 * 110.75447 * 81.54620 * 12 11 10 14 14 C 1.50703 * 110.61630 * 204.47399 * 12 11 10 15 15 H 1.08006 * 120.00159 * 355.52242 * 14 12 11 16 16 C 1.37877 * 120.00120 * 175.52611 * 14 12 11 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 O 1.43738 * 109.87878 * 218.54375 * 8 7 6 23 23 C 1.38231 * 119.99895 * 0.24881 * 7 6 4 24 24 H 1.08995 * 109.47064 * 89.99913 * 1 2 3 25 25 H 1.08997 * 109.46802 * 210.00499 * 1 2 3 26 26 H 1.09002 * 109.47027 * 330.00168 * 1 2 3 27 27 H 1.08003 * 119.99962 * 0.02562 * 3 2 1 28 28 H 1.09007 * 109.46878 * 270.01810 * 5 4 3 29 29 H 1.08998 * 109.47123 * 30.01303 * 5 4 3 30 30 H 1.08999 * 109.47806 * 150.02200 * 5 4 3 31 31 H 1.07994 * 120.00321 * 179.97438 * 6 4 3 32 32 H 1.09001 * 110.48834 * 240.13487 * 10 8 7 33 33 H 1.09003 * 110.48743 * 2.64622 * 10 8 7 34 34 H 1.08998 * 110.91362 * 262.68169 * 11 10 8 35 35 H 1.09005 * 110.90919 * 139.07832 * 11 10 8 36 36 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 37 37 H 1.08002 * 120.00167 * 179.72578 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2718 0.0001 -0.0005 7 6 3.5806 -1.1972 -0.0005 8 6 4.3341 -2.5023 -0.0011 9 1 5.3510 -2.3427 -0.3596 10 6 4.3633 -3.0911 1.4227 11 6 3.6919 -4.4780 1.2736 12 6 3.8500 -4.7537 -0.2435 13 1 4.8455 -5.1386 -0.4644 14 6 2.7929 -5.7159 -0.7209 15 1 2.1108 -6.1635 -0.0131 16 6 2.6965 -6.0249 -2.0611 17 7 3.5268 -5.4796 -2.9230 18 14 1.3858 -7.2170 -2.6529 19 1 1.9266 -8.5999 -2.6277 20 1 0.9877 -6.8664 -4.0399 21 1 0.2010 -7.1325 -1.7616 22 8 3.6625 -3.4540 -0.8434 23 6 2.1983 -1.1972 -0.0057 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6583 2.1325 0.0004 28 1 4.5150 2.8168 -1.0290 29 1 3.7453 3.2619 0.5130 30 1 5.2869 2.3720 0.5120 31 1 5.3517 0.0000 -0.0014 32 1 5.3909 -3.1999 1.7695 33 1 3.7951 -2.4616 2.1076 34 1 2.6394 -4.4328 1.5532 35 1 4.2174 -5.2299 1.8624 36 1 4.2071 -4.8603 -2.6156 37 1 1.6583 -2.1325 -0.0102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381040489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:38 Heat of formation + Delta-G solvation = -65.334334 kcal Electronic energy + Delta-G solvation = -17800.852486 eV Core-core repulsion = 15120.046757 eV Total energy + Delta-G solvation = -2680.805729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01149 -39.53501 -35.16167 -34.39746 -33.47929 -32.73667 -29.64351 -28.11995 -27.56322 -26.31440 -23.70827 -22.51066 -21.56957 -21.06986 -19.17202 -17.50176 -17.19458 -16.70886 -16.11006 -15.62668 -15.41897 -15.11086 -14.91466 -14.59457 -14.10083 -14.01498 -13.82678 -13.45695 -13.33166 -13.09785 -12.77876 -12.63317 -12.47824 -12.39640 -12.19399 -11.94980 -11.92263 -11.81509 -11.44440 -10.80242 -10.70150 -10.23811 -9.51183 -9.45177 -8.68294 -6.47036 0.39568 0.44901 1.50341 1.60603 1.77998 2.54314 2.71630 3.07717 3.49759 3.69345 3.80831 3.91885 3.95962 4.03325 4.24892 4.31107 4.36624 4.49609 4.50990 4.60585 4.69777 4.75634 4.77215 4.79740 4.86410 4.89752 4.99862 5.05298 5.08804 5.23477 5.30786 5.36956 5.63400 5.65313 5.76330 5.90430 6.07478 6.13753 6.44097 6.61194 7.45541 8.72292 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025834 B = 0.006357 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.562318 B = 4403.398349 C = 4835.173172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.087 4.087 5 C -0.107 4.107 6 C -0.133 4.133 7 C -0.084 4.084 8 C 0.096 3.904 9 H 0.059 0.941 10 C -0.131 4.131 11 C -0.129 4.129 12 C 0.179 3.821 13 H -0.006 1.006 14 C -0.622 4.622 15 H 0.057 0.943 16 C -0.022 4.022 17 N -0.920 5.920 18 Si 1.120 2.880 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.270 1.270 22 O -0.393 6.393 23 C -0.125 4.125 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.150 0.850 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.263 0.737 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 14.325 8.527 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.087 4.087 5 C -0.163 4.163 6 C -0.151 4.151 7 C -0.084 4.084 8 C 0.038 3.962 9 H 0.076 0.924 10 C -0.168 4.168 11 C -0.167 4.167 12 C 0.124 3.876 13 H 0.011 0.989 14 C -0.659 4.659 15 H 0.075 0.925 16 C -0.223 4.223 17 N -0.555 5.555 18 Si 0.941 3.059 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.195 1.195 22 O -0.313 6.313 23 C -0.143 4.143 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.168 0.832 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.914 13.651 7.021 15.470 hybrid contribution 1.026 0.224 1.264 1.643 sum -0.888 13.875 8.284 16.184 Atomic orbital electron populations 1.20808 0.89609 1.03493 1.02768 1.20224 0.97466 0.92629 0.99030 1.21201 0.93759 0.97745 1.01878 1.20227 0.94186 0.95845 0.98414 1.20807 1.00026 0.92377 1.03111 1.21010 1.00247 0.91140 1.02697 1.19966 0.94251 0.94331 0.99859 1.21663 0.94445 0.88455 0.91633 0.92358 1.22877 1.02094 0.96067 0.95782 1.22948 1.00390 0.96542 0.96809 1.20793 0.94679 0.82038 0.90069 0.98885 1.22308 1.20107 1.27248 0.96249 0.92453 1.27454 1.01238 0.99683 0.93918 1.70774 1.18090 1.28886 1.37797 0.82926 0.73219 0.74166 0.75594 1.19113 1.21038 1.19477 1.89177 1.75072 1.17866 1.49223 1.20864 0.94157 0.97745 1.01573 0.91008 0.92187 0.89001 0.83243 0.90493 0.89780 0.90716 0.84990 0.89195 0.90197 0.92365 0.90254 0.92727 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 10.01 71.24 0.71 -2.01 16 2 C -0.09 -2.91 5.88 -19.86 -0.12 -3.02 16 3 C -0.13 -3.33 9.36 22.27 0.21 -3.12 16 4 C -0.09 -2.25 5.88 -19.87 -0.12 -2.37 16 5 C -0.11 -1.84 10.01 71.23 0.71 -1.12 16 6 C -0.13 -4.14 9.33 22.27 0.21 -3.93 16 7 C -0.08 -3.22 4.76 -19.87 -0.09 -3.31 16 8 C 0.10 4.08 3.63 30.22 0.11 4.19 16 9 H 0.06 2.38 8.03 -2.38 -0.02 2.36 16 10 C -0.13 -4.77 6.63 31.58 0.21 -4.56 16 11 C -0.13 -5.55 6.55 31.89 0.21 -5.34 16 12 C 0.18 9.74 2.70 30.53 0.08 9.82 16 13 H -0.01 -0.37 8.07 -2.39 -0.02 -0.39 16 14 C -0.62 -36.85 8.83 25.60 0.23 -36.63 16 15 H 0.06 3.29 7.78 -2.91 -0.02 3.27 16 16 C -0.02 -1.31 5.42 84.65 0.46 -0.85 16 17 N -0.92 -59.47 13.56 21.45 0.29 -59.18 16 18 Si 1.12 51.84 29.90 68.60 2.05 53.89 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 O -0.39 -21.48 9.04 -148.98 -1.35 -22.83 16 23 C -0.13 -4.90 9.02 22.27 0.20 -4.70 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 1.54 8.09 -2.39 -0.02 1.52 16 26 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 27 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 30 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 31 H 0.13 3.57 8.05 -2.91 -0.02 3.54 16 32 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.08 2.68 7.69 -2.39 -0.02 2.66 16 34 H 0.06 2.56 8.05 -2.39 -0.02 2.54 16 35 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 36 H 0.26 17.48 6.59 -92.71 -0.61 16.87 16 37 H 0.09 4.24 7.74 -2.91 -0.02 4.22 16 Total: -1.00 -72.19 306.82 5.19 -67.00 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 1.19 Total: 18.08 kcal Atomic # 6 Polarization: -59.97 SS G_CDS: 3.01 Total: -56.96 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.29 Total: -59.18 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.35 Total: -22.83 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 2.05 Total: 53.89 kcal Total: -72.19 5.19 -67.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381040489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.663 kcal (2) G-P(sol) polarization free energy of solvation -72.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds