Wall clock time and date at job start Mon Mar 30 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38237 * 119.99936 * 2 1 4 4 C 1.38242 * 119.99789 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99546 * 179.97438 * 4 3 2 6 6 C 1.38229 * 119.99967 * 0.02562 * 4 3 2 7 7 C 1.38234 * 120.00115 * 359.95504 * 6 4 3 8 8 C 1.50702 * 119.99634 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.90211 * 339.07102 * 8 7 6 10 10 C 1.54388 * 109.82883 * 100.00091 * 8 7 6 11 11 C 1.55308 * 102.43740 * 140.97109 * 10 8 7 12 12 C 1.54952 * 100.93825 * 325.76522 * 11 10 8 13 13 H 1.09000 * 110.30869 * 277.43002 * 12 11 10 14 14 C 1.50701 * 110.30633 * 155.36443 * 12 11 10 15 15 H 1.07998 * 120.00342 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99896 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99981 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00029 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47367 * 89.99831 * 18 16 14 20 20 H 1.48504 * 109.47042 * 210.00187 * 18 16 14 21 21 H 1.48497 * 109.46906 * 329.99537 * 18 16 14 22 22 O 1.43640 * 105.13916 * 36.44606 * 12 11 10 23 23 C 1.38232 * 120.00128 * 180.21691 * 2 1 3 24 24 H 1.08991 * 109.47801 * 89.99898 * 1 2 3 25 25 H 1.09008 * 109.47194 * 210.00091 * 1 2 3 26 26 H 1.09002 * 109.47280 * 329.99461 * 1 2 3 27 27 H 1.08001 * 120.00079 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.46664 * 270.01830 * 5 4 3 29 29 H 1.09001 * 109.47553 * 30.02051 * 5 4 3 30 30 H 1.09002 * 109.46828 * 150.02744 * 5 4 3 31 31 H 1.08006 * 119.99931 * 179.97438 * 6 4 3 32 32 H 1.09002 * 110.84891 * 22.67699 * 10 8 7 33 33 H 1.09001 * 110.84460 * 259.25892 * 10 8 7 34 34 H 1.09000 * 111.12817 * 83.68227 * 11 10 8 35 35 H 1.08999 * 111.12381 * 207.85145 * 11 10 8 36 36 H 0.97003 * 120.00291 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.00636 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2716 0.0000 -0.0016 7 6 3.5804 -1.1971 -0.0012 8 6 4.3340 -2.5022 -0.0018 9 1 5.3483 -2.3448 -0.3686 10 6 4.3784 -3.0819 1.4284 11 6 4.1875 -4.6029 1.1789 12 6 3.2322 -4.5831 -0.0409 13 1 2.2017 -4.4484 0.2878 14 6 3.3658 -5.8596 -0.8306 15 1 4.0595 -6.6228 -0.5101 16 6 2.6031 -6.0528 -1.9629 17 7 1.7587 -5.1232 -2.3535 18 14 2.7692 -7.6348 -2.9422 19 1 1.8077 -8.6408 -2.4243 20 1 2.4794 -7.3638 -4.3733 21 1 4.1527 -8.1572 -2.8077 22 8 3.6561 -3.4611 -0.8313 23 6 2.1981 -1.1971 -0.0045 24 1 -0.3634 0.0000 -1.0275 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6581 2.1325 0.0004 28 1 4.5149 2.8168 -1.0290 29 1 3.7453 3.2620 0.5131 30 1 5.2868 2.3720 0.5120 31 1 5.3517 0.0000 -0.0024 32 1 3.5648 -2.6830 2.0342 33 1 5.3422 -2.8838 1.8975 34 1 5.1341 -5.0819 0.9288 35 1 3.7194 -5.0859 2.0366 36 1 1.2219 -5.2592 -3.1499 37 1 1.6583 -2.1325 -0.0085 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381040492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:40 Heat of formation + Delta-G solvation = -41.990791 kcal Electronic energy + Delta-G solvation = -17770.155835 eV Core-core repulsion = 15090.362358 eV Total energy + Delta-G solvation = -2679.793477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.45913 -37.68324 -33.18898 -32.94578 -31.79147 -30.82309 -28.15171 -26.95085 -26.30137 -24.64281 -21.94453 -20.40632 -20.27643 -19.45581 -16.59924 -15.97363 -15.64616 -14.96636 -14.56355 -14.23741 -13.86636 -13.69509 -13.07127 -13.00638 -12.57598 -12.44007 -12.34334 -12.16779 -11.73073 -11.67377 -11.52178 -11.08173 -10.90005 -10.65354 -10.57749 -10.36322 -10.32767 -10.14713 -9.75017 -9.10291 -8.57652 -8.21941 -8.12379 -7.83504 -6.00015 -4.12925 1.77478 1.82364 3.31367 3.38382 3.41606 4.11759 4.43275 4.99913 5.05260 5.17013 5.22895 5.48607 5.49684 5.52252 5.56904 5.63966 5.68531 5.80597 5.87060 5.90319 5.94015 6.00783 6.14578 6.24000 6.31805 6.34646 6.53733 6.59325 6.66196 6.74280 6.81439 6.91907 7.03822 7.25105 7.48855 7.58727 7.89844 8.27059 8.63375 9.02885 9.58027 11.07396 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.006160 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.178591 B = 4544.053188 C = 4986.666419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.132 4.132 4 C -0.095 4.095 5 C -0.108 4.108 6 C -0.125 4.125 7 C -0.071 4.071 8 C 0.108 3.892 9 H 0.067 0.933 10 C -0.145 4.145 11 C -0.147 4.147 12 C 0.210 3.790 13 H 0.028 0.972 14 C -0.534 4.534 15 H 0.062 0.938 16 C 0.078 3.922 17 N -0.862 5.862 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 O -0.349 6.349 23 C -0.092 4.092 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.261 0.739 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 11.570 6.192 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.151 4.151 4 C -0.095 4.095 5 C -0.165 4.165 6 C -0.143 4.143 7 C -0.072 4.072 8 C 0.049 3.951 9 H 0.085 0.915 10 C -0.183 4.183 11 C -0.185 4.185 12 C 0.155 3.845 13 H 0.046 0.954 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.128 4.128 17 N -0.499 5.499 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 O -0.269 6.269 23 C -0.110 4.110 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.547 11.642 5.841 13.117 hybrid contribution 0.124 -0.784 -0.448 0.911 sum 1.671 10.859 5.392 12.238 Atomic orbital electron populations 1.20745 0.91581 1.02164 1.02231 1.19893 0.95866 0.93138 1.00020 1.20748 0.93421 0.97089 1.03798 1.19730 0.93784 0.94857 1.01134 1.20719 0.99591 0.94297 1.01865 1.20780 0.99221 0.91498 1.02845 1.20436 0.94386 0.95183 0.97176 1.21527 0.94634 0.87689 0.91281 0.91528 1.23102 1.01212 0.97375 0.96584 1.23347 1.01441 0.93502 1.00223 1.20537 0.92141 0.85205 0.86666 0.95437 1.21112 1.24055 1.00321 1.11680 0.91950 1.25076 0.94441 0.96219 0.97058 1.70027 1.23270 1.32710 1.23847 0.86624 0.78555 0.83530 0.79416 1.20548 1.21107 1.19761 1.88984 1.74809 1.30145 1.32939 1.21023 0.93898 0.97829 0.98204 0.91317 0.91498 0.92217 0.86914 0.91628 0.92057 0.91929 0.86699 0.91606 0.91774 0.91549 0.91905 0.92927 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 36.00 0.36 -1.17 16 2 C -0.09 -1.49 5.88 -104.63 -0.62 -2.11 16 3 C -0.13 -2.00 9.36 -39.58 -0.37 -2.37 16 4 C -0.10 -1.41 5.88 -104.62 -0.62 -2.03 16 5 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 6 C -0.13 -2.07 9.33 -39.59 -0.37 -2.44 16 7 C -0.07 -1.38 4.86 -104.62 -0.51 -1.89 16 8 C 0.11 2.24 3.76 -27.15 -0.10 2.13 16 9 H 0.07 1.31 8.04 -51.93 -0.42 0.90 16 10 C -0.14 -2.66 6.52 -24.78 -0.16 -2.82 16 11 C -0.15 -3.07 6.53 -24.48 -0.16 -3.23 16 12 C 0.21 5.42 3.22 -26.85 -0.09 5.33 16 13 H 0.03 0.77 8.13 -51.93 -0.42 0.35 16 14 C -0.53 -15.08 8.79 -34.44 -0.30 -15.38 16 15 H 0.06 1.71 7.76 -52.49 -0.41 1.30 16 16 C 0.08 2.22 5.43 -17.82 -0.10 2.13 16 17 N -0.86 -25.71 13.05 55.43 0.72 -24.99 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 O -0.35 -9.17 9.68 -35.23 -0.34 -9.51 16 23 C -0.09 -1.80 9.01 -39.59 -0.36 -2.16 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.93 8.09 -51.92 -0.42 0.51 16 26 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.11 1.67 8.05 -52.48 -0.42 1.25 16 32 H 0.07 1.17 7.83 -51.93 -0.41 0.76 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.13 2.85 7.72 -52.49 -0.41 2.45 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -30.85 309.02 -8.83 -39.68 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.83 Total: 0.51 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -3.02 Total: -26.83 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.72 Total: -24.99 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.34 Total: -9.51 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.85 -8.83 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381040492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.310 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds