Wall clock time and date at job start Mon Mar 30 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38237 * 119.99936 * 2 1 4 4 C 1.38242 * 119.99789 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99546 * 179.97438 * 4 3 2 6 6 C 1.38229 * 119.99967 * 0.02562 * 4 3 2 7 7 C 1.38234 * 120.00115 * 359.95504 * 6 4 3 8 8 C 1.50702 * 119.99634 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.90211 * 339.07102 * 8 7 6 10 10 C 1.54388 * 109.82883 * 100.00091 * 8 7 6 11 11 C 1.55308 * 102.43740 * 140.97109 * 10 8 7 12 12 C 1.54952 * 100.93825 * 325.76522 * 11 10 8 13 13 H 1.09000 * 110.30869 * 277.43002 * 12 11 10 14 14 C 1.50701 * 110.30633 * 155.36443 * 12 11 10 15 15 H 1.07998 * 120.00342 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99896 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99981 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00029 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47367 * 89.99831 * 18 16 14 20 20 H 1.48504 * 109.47042 * 210.00187 * 18 16 14 21 21 H 1.48497 * 109.46906 * 329.99537 * 18 16 14 22 22 O 1.43640 * 105.13916 * 36.44606 * 12 11 10 23 23 C 1.38232 * 120.00128 * 180.21691 * 2 1 3 24 24 H 1.08991 * 109.47801 * 89.99898 * 1 2 3 25 25 H 1.09008 * 109.47194 * 210.00091 * 1 2 3 26 26 H 1.09002 * 109.47280 * 329.99461 * 1 2 3 27 27 H 1.08001 * 120.00079 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.46664 * 270.01830 * 5 4 3 29 29 H 1.09001 * 109.47553 * 30.02051 * 5 4 3 30 30 H 1.09002 * 109.46828 * 150.02744 * 5 4 3 31 31 H 1.08006 * 119.99931 * 179.97438 * 6 4 3 32 32 H 1.09002 * 110.84891 * 22.67699 * 10 8 7 33 33 H 1.09001 * 110.84460 * 259.25892 * 10 8 7 34 34 H 1.09000 * 111.12817 * 83.68227 * 11 10 8 35 35 H 1.08999 * 111.12381 * 207.85145 * 11 10 8 36 36 H 0.97003 * 120.00291 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.00636 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2716 0.0000 -0.0016 7 6 3.5804 -1.1971 -0.0012 8 6 4.3340 -2.5022 -0.0018 9 1 5.3483 -2.3448 -0.3686 10 6 4.3784 -3.0819 1.4284 11 6 4.1875 -4.6029 1.1789 12 6 3.2322 -4.5831 -0.0409 13 1 2.2017 -4.4484 0.2878 14 6 3.3658 -5.8596 -0.8306 15 1 4.0595 -6.6228 -0.5101 16 6 2.6031 -6.0528 -1.9629 17 7 1.7587 -5.1232 -2.3535 18 14 2.7692 -7.6348 -2.9422 19 1 1.8077 -8.6408 -2.4243 20 1 2.4794 -7.3638 -4.3733 21 1 4.1527 -8.1572 -2.8077 22 8 3.6561 -3.4611 -0.8313 23 6 2.1981 -1.1971 -0.0045 24 1 -0.3634 0.0000 -1.0275 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6581 2.1325 0.0004 28 1 4.5149 2.8168 -1.0290 29 1 3.7453 3.2620 0.5131 30 1 5.2868 2.3720 0.5120 31 1 5.3517 0.0000 -0.0024 32 1 3.5648 -2.6830 2.0342 33 1 5.3422 -2.8838 1.8975 34 1 5.1341 -5.0819 0.9288 35 1 3.7194 -5.0859 2.0366 36 1 1.2219 -5.2592 -3.1499 37 1 1.6583 -2.1325 -0.0085 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381040492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:40 Heat of formation + Delta-G solvation = -58.911827 kcal Electronic energy + Delta-G solvation = -17770.889586 eV Core-core repulsion = 15090.362358 eV Total energy + Delta-G solvation = -2680.527228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88822 -39.31229 -34.90762 -34.34859 -33.40612 -32.57643 -29.87630 -28.13191 -27.50332 -26.51744 -23.56542 -22.13685 -21.60097 -20.94302 -18.66757 -17.43949 -17.16276 -16.73726 -16.28441 -15.75298 -15.44876 -14.87776 -14.54863 -14.19195 -13.99220 -13.96222 -13.72904 -13.59491 -13.30214 -13.00860 -12.79731 -12.70201 -12.42665 -12.37120 -12.25468 -12.09092 -11.86901 -11.66978 -11.45209 -11.03494 -10.72158 -9.95675 -9.42054 -9.37297 -8.16102 -6.37676 0.47265 0.51393 1.38987 1.41062 1.51776 2.39614 2.78282 3.08038 3.69699 3.77923 3.85560 3.97155 4.01824 4.19320 4.31319 4.43293 4.50354 4.55717 4.62148 4.70166 4.75991 4.77961 4.83759 4.90326 4.92663 5.02116 5.07822 5.10189 5.18989 5.29822 5.40716 5.51952 5.69367 5.70254 5.75731 5.87431 6.16690 6.20807 6.59334 7.01769 7.38782 8.91724 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.006160 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.178591 B = 4544.053188 C = 4986.666419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.131 4.131 4 C -0.088 4.088 5 C -0.106 4.106 6 C -0.132 4.132 7 C -0.092 4.092 8 C 0.097 3.903 9 H 0.077 0.923 10 C -0.130 4.130 11 C -0.139 4.139 12 C 0.204 3.796 13 H -0.011 1.011 14 C -0.557 4.557 15 H 0.067 0.933 16 C 0.021 3.979 17 N -0.903 5.903 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.264 1.264 22 O -0.387 6.387 23 C -0.126 4.126 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.261 0.739 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 13.392 6.793 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.088 4.088 5 C -0.162 4.162 6 C -0.150 4.150 7 C -0.092 4.092 8 C 0.039 3.961 9 H 0.094 0.906 10 C -0.167 4.167 11 C -0.177 4.177 12 C 0.149 3.851 13 H 0.007 0.993 14 C -0.594 4.594 15 H 0.085 0.915 16 C -0.181 4.181 17 N -0.540 5.540 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.188 1.188 22 O -0.307 6.307 23 C -0.144 4.144 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.165 0.835 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.154 0.846 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.856 13.463 6.461 15.204 hybrid contribution -0.280 -1.241 -0.612 1.412 sum 2.576 12.222 5.850 13.792 Atomic orbital electron populations 1.20786 0.90009 1.03235 1.02561 1.20188 0.97262 0.92809 0.99331 1.21160 0.93906 0.97492 1.02322 1.20240 0.94058 0.96018 0.98520 1.20798 1.00018 0.92329 1.03062 1.21024 1.00323 0.91014 1.02631 1.20381 0.94200 0.95557 0.99045 1.21800 0.94707 0.87641 0.91995 0.90563 1.23032 1.03217 0.94974 0.95475 1.23225 1.00253 0.95749 0.98461 1.20379 0.91546 0.84786 0.88404 0.99322 1.21569 1.24069 1.01608 1.12185 0.91531 1.26003 0.93991 0.99811 0.98270 1.70195 1.24394 1.35022 1.24391 0.85494 0.79036 0.79199 0.77494 1.19307 1.21000 1.18784 1.88869 1.75502 1.31365 1.34940 1.20843 0.94482 0.97427 1.01682 0.91278 0.92607 0.88961 0.83468 0.90521 0.89987 0.90582 0.84620 0.91505 0.88077 0.91154 0.90403 0.93034 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.02 10.01 71.23 0.71 -2.31 16 2 C -0.10 -3.21 5.88 -19.87 -0.12 -3.32 16 3 C -0.13 -3.62 9.36 22.27 0.21 -3.41 16 4 C -0.09 -2.37 5.88 -19.86 -0.12 -2.49 16 5 C -0.11 -1.87 10.01 71.24 0.71 -1.15 16 6 C -0.13 -4.16 9.33 22.27 0.21 -3.95 16 7 C -0.09 -3.59 4.86 -19.87 -0.10 -3.69 16 8 C 0.10 4.10 3.76 30.32 0.11 4.21 16 9 H 0.08 3.00 8.04 -2.39 -0.02 2.98 16 10 C -0.13 -4.70 6.52 31.86 0.21 -4.49 16 11 C -0.14 -5.86 6.53 32.05 0.21 -5.65 16 12 C 0.20 11.12 3.22 30.52 0.10 11.22 16 13 H -0.01 -0.65 8.13 -2.39 -0.02 -0.67 16 14 C -0.56 -32.53 8.79 25.60 0.23 -32.30 16 15 H 0.07 3.71 7.76 -2.91 -0.02 3.68 16 16 C 0.02 1.24 5.43 84.65 0.46 1.70 16 17 N -0.90 -56.47 13.05 21.45 0.28 -56.19 16 18 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 22 O -0.39 -21.37 9.68 -148.98 -1.44 -22.82 16 23 C -0.13 -5.23 9.01 22.27 0.20 -5.03 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.63 8.09 -2.38 -0.02 1.61 16 26 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 27 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 28 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 30 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 31 H 0.14 3.60 8.05 -2.91 -0.02 3.57 16 32 H 0.07 2.39 7.83 -2.39 -0.02 2.37 16 33 H 0.10 2.91 8.14 -2.39 -0.02 2.90 16 34 H 0.07 2.88 8.04 -2.39 -0.02 2.86 16 35 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.09 4.26 7.72 -2.91 -0.02 4.23 16 Total: -1.00 -70.85 309.02 4.92 -65.93 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.03 Total: 16.56 kcal Atomic # 6 Polarization: -53.68 SS G_CDS: 3.03 Total: -50.65 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.19 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.44 Total: -22.82 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.85 4.92 -65.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381040492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.015 kcal (2) G-P(sol) polarization free energy of solvation -70.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds