Wall clock time and date at job start Mon Mar 30 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38249 * 120.00182 * 2 1 4 4 C 1.38209 * 120.00010 * 180.22870 * 3 2 1 5 5 C 1.38255 * 120.00241 * 359.81262 * 4 3 2 6 6 C 1.38216 * 119.99931 * 359.97438 * 5 4 3 7 7 C 1.38215 * 119.99551 * 179.78542 * 2 1 3 8 8 C 1.50700 * 120.00405 * 0.02562 * 7 2 1 9 9 H 1.08994 * 110.27312 * 34.07979 * 8 7 2 10 10 C 1.54952 * 110.30354 * 271.88990 * 8 7 2 11 11 C 1.55311 * 100.93794 * 204.63855 * 10 8 7 12 12 C 1.54381 * 102.25258 * 34.13395 * 11 10 8 13 13 C 1.52994 * 109.90492 * 98.19910 * 12 11 10 14 14 C 1.50704 * 109.82916 * 219.12845 * 12 11 10 15 15 H 1.07999 * 119.99448 * 352.82190 * 14 12 11 16 16 C 1.37877 * 119.99694 * 172.81969 * 14 12 11 17 17 N 1.31515 * 119.99668 * 164.93146 * 16 14 12 18 18 Si 1.86794 * 120.00307 * 344.92651 * 16 14 12 19 19 H 1.48499 * 109.47172 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47117 * 60.00139 * 18 16 14 21 21 H 1.48504 * 109.47062 * 300.00372 * 18 16 14 22 22 O 1.43237 * 107.58918 * 338.64176 * 12 11 10 23 23 H 1.08997 * 109.47491 * 270.21351 * 1 2 3 24 24 H 1.09004 * 109.46903 * 30.21399 * 1 2 3 25 25 H 1.08999 * 109.47187 * 150.20604 * 1 2 3 26 26 H 1.08002 * 120.00479 * 0.06110 * 3 2 1 27 27 H 1.08003 * 120.00146 * 179.83492 * 4 3 2 28 28 H 1.08004 * 120.00665 * 179.97438 * 5 4 3 29 29 H 1.07997 * 120.00461 * 179.97438 * 6 5 4 30 30 H 1.09000 * 111.12547 * 322.55592 * 10 8 7 31 31 H 1.08996 * 111.12540 * 86.67776 * 10 8 7 32 32 H 1.08999 * 110.84751 * 275.94113 * 11 10 8 33 33 H 1.09001 * 110.84575 * 152.32244 * 11 10 8 34 34 H 1.09001 * 109.47112 * 174.72076 * 13 12 11 35 35 H 1.09001 * 109.47557 * 294.72206 * 13 12 11 36 36 H 1.09000 * 109.47362 * 54.72858 * 13 12 11 37 37 H 0.97004 * 120.00234 * 354.88754 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 -0.0048 5 6 4.2717 -0.0001 -0.0056 6 6 3.5806 -1.1971 -0.0012 7 6 2.1980 -1.1970 0.0045 8 6 1.4445 -2.5021 0.0088 9 1 0.5225 -2.4078 -0.5648 10 6 1.1336 -2.9387 1.4627 11 6 0.9887 -4.4747 1.2845 12 6 2.0187 -4.7744 0.1743 13 6 3.3207 -5.2838 0.7956 14 6 1.4647 -5.8088 -0.7713 15 1 0.5312 -6.3024 -0.5449 16 6 2.1496 -6.1249 -1.9254 17 7 1.8413 -7.2135 -2.5958 18 14 3.5154 -5.0068 -2.5369 19 1 4.0890 -5.5647 -3.7879 20 1 4.5779 -4.9126 -1.5036 21 1 2.9648 -3.6541 -2.8055 22 8 2.2626 -3.5520 -0.5313 23 1 -0.3634 0.0038 1.0276 24 1 -0.3633 0.8881 -0.5172 25 1 -0.3633 -0.8918 -0.5106 26 1 1.6584 2.1326 0.0010 27 1 4.1205 2.1325 -0.0075 28 1 5.3517 -0.0002 -0.0098 29 1 4.1206 -2.1324 -0.0023 30 1 1.9603 -2.6969 2.1307 31 1 0.2033 -2.4940 1.8159 32 1 -0.0188 -4.7341 0.9593 33 1 1.2472 -4.9981 2.2051 34 1 4.0088 -5.5815 0.0043 35 1 3.7735 -4.4914 1.3916 36 1 3.1078 -6.1417 1.4334 37 1 1.1841 -7.8322 -2.2404 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381134842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:03 Heat of formation + Delta-G solvation = -29.739520 kcal Electronic energy + Delta-G solvation = -18457.167023 eV Core-core repulsion = 15777.904801 eV Total energy + Delta-G solvation = -2679.262222 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74022 -38.11969 -33.38968 -32.63337 -31.41212 -31.25782 -29.40317 -26.80025 -25.25668 -24.41339 -22.14008 -21.37606 -20.09795 -19.25222 -17.34349 -16.41979 -16.08017 -14.92432 -14.53667 -14.11550 -13.78741 -13.64080 -13.40460 -12.93519 -12.83488 -12.44670 -12.22759 -12.09465 -11.96598 -11.68854 -11.44488 -11.19551 -11.01930 -10.76299 -10.35364 -10.17370 -10.03374 -9.93026 -9.23497 -9.10675 -8.54791 -8.41072 -8.28982 -8.08007 -6.39399 -4.14501 1.57002 1.64960 3.59249 3.63841 3.90222 3.98983 4.65396 4.75987 5.01913 5.09639 5.17790 5.27197 5.37592 5.40218 5.42083 5.58094 5.68170 5.73269 5.85100 6.00646 6.04477 6.09974 6.16832 6.27002 6.34113 6.38507 6.46065 6.56007 6.62846 6.69492 6.77665 6.80685 6.88426 7.05753 7.26541 7.42271 8.06390 8.20845 8.40424 8.92992 9.61308 10.95985 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026586 B = 0.008437 C = 0.007599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.951974 B = 3317.808607 C = 3684.050171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 C -0.126 4.126 4 C -0.127 4.127 5 C -0.131 4.131 6 C -0.093 4.093 7 C -0.074 4.074 8 C 0.121 3.879 9 H 0.073 0.927 10 C -0.143 4.143 11 C -0.130 4.130 12 C 0.195 3.805 13 C -0.148 4.148 14 C -0.605 4.605 15 H 0.060 0.940 16 C 0.044 3.956 17 N -0.903 5.903 18 Si 1.066 2.934 19 H -0.306 1.306 20 H -0.278 1.278 21 H -0.272 1.272 22 O -0.376 6.376 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.052 0.948 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 14.699 7.625 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.110 4.110 7 C -0.075 4.075 8 C 0.063 3.937 9 H 0.090 0.910 10 C -0.181 4.181 11 C -0.167 4.167 12 C 0.158 3.842 13 C -0.205 4.205 14 C -0.642 4.642 15 H 0.078 0.922 16 C -0.162 4.162 17 N -0.536 5.536 18 Si 0.897 3.103 19 H -0.235 1.235 20 H -0.205 1.205 21 H -0.199 1.199 22 O -0.297 6.297 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.148 0.852 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.884 14.918 6.234 16.278 hybrid contribution -1.272 -0.262 1.439 1.938 sum 0.613 14.656 7.673 16.555 Atomic orbital electron populations 1.20861 0.91537 1.02937 1.02150 1.19671 0.95912 0.92456 1.00367 1.20887 0.94224 0.96993 1.02330 1.21031 0.94278 0.97730 1.01440 1.21132 0.99656 0.92578 1.01507 1.21133 0.93969 0.98395 0.97549 1.19966 0.94193 0.94188 0.99106 1.21585 0.93056 0.85748 0.93306 0.90955 1.23193 1.01212 0.97222 0.96466 1.23076 1.01066 0.93390 0.99213 1.20156 0.91090 0.82993 0.90004 1.22325 0.98967 0.99089 1.00123 1.22118 1.10247 1.22507 1.09280 0.92220 1.25891 1.00154 0.96713 0.93436 1.70904 1.32038 1.09568 1.41103 0.83742 0.75655 0.76077 0.74805 1.23451 1.20499 1.19862 1.88353 1.63815 1.18749 1.58800 0.91317 0.91851 0.90883 0.86520 0.86630 0.86430 0.85246 0.91333 0.91350 0.91319 0.91910 0.92121 0.95331 0.92940 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.60 36.01 0.35 -1.11 16 2 C -0.08 -1.25 5.88 -104.62 -0.62 -1.86 16 3 C -0.13 -1.66 9.70 -39.59 -0.38 -2.05 16 4 C -0.13 -1.64 10.05 -39.59 -0.40 -2.04 16 5 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 6 C -0.09 -1.59 9.37 -39.58 -0.37 -1.97 16 7 C -0.07 -1.30 5.09 -104.62 -0.53 -1.83 16 8 C 0.12 2.32 3.16 -26.85 -0.08 2.24 16 9 H 0.07 1.40 6.17 -51.93 -0.32 1.08 16 10 C -0.14 -2.44 6.56 -24.48 -0.16 -2.60 16 11 C -0.13 -2.57 6.07 -24.78 -0.15 -2.72 16 12 C 0.20 4.61 0.78 -91.05 -0.07 4.54 16 13 C -0.15 -3.27 8.44 37.15 0.31 -2.96 16 14 C -0.60 -17.06 8.59 -34.44 -0.30 -17.36 16 15 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 16 C 0.04 1.31 5.34 -17.82 -0.10 1.21 16 17 N -0.90 -28.17 13.70 55.43 0.76 -27.41 16 18 Si 1.07 27.76 24.82 -169.99 -4.22 23.54 16 19 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 20 H -0.28 -6.73 5.65 56.52 0.32 -6.41 16 21 H -0.27 -7.06 6.77 56.52 0.38 -6.68 16 22 O -0.38 -8.78 5.50 -35.23 -0.19 -8.98 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.07 0.97 6.03 -51.93 -0.31 0.65 16 26 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 28 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.13 2.38 7.35 -52.49 -0.39 2.00 16 30 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16 33 H 0.06 1.14 7.78 -51.93 -0.40 0.74 16 34 H 0.06 1.43 4.75 -51.93 -0.25 1.19 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.27 8.18 8.73 -40.82 -0.36 7.83 16 LS Contribution 291.39 15.07 4.39 4.39 Total: -1.00 -31.21 291.39 -7.69 -38.90 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.53 Total: 0.34 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -2.90 Total: -30.79 kcal Atomic # 7 Polarization: -28.17 SS G_CDS: 0.76 Total: -27.41 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.19 Total: -8.98 kcal Atomic # 14 Polarization: 27.76 SS G_CDS: -4.22 Total: 23.54 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.21 -7.69 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381134842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.164 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds