Wall clock time and date at job start Mon Mar 30 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 120.00105 * 2 1 4 4 C 1.38209 * 119.99877 * 179.72451 * 3 2 1 5 5 C 1.38260 * 120.00092 * 0.56013 * 4 3 2 6 6 C 1.38212 * 119.99650 * 359.45889 * 5 4 3 7 7 C 1.38216 * 119.99787 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.00020 * 359.97438 * 7 2 1 9 9 H 1.09001 * 110.27678 * 37.11146 * 8 7 2 10 10 C 1.54952 * 110.30825 * 275.02416 * 8 7 2 11 11 C 1.55303 * 100.94036 * 204.64242 * 10 8 7 12 12 C 1.54389 * 102.25593 * 34.13009 * 11 10 8 13 13 C 1.52997 * 109.83294 * 219.13270 * 12 11 10 14 14 C 1.50697 * 109.82898 * 98.24966 * 12 11 10 15 15 H 1.08001 * 119.99880 * 359.97438 * 14 12 11 16 16 C 1.37876 * 120.00020 * 180.02562 * 14 12 11 17 17 N 1.31511 * 119.99622 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99933 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47002 * 59.99946 * 18 16 14 20 20 H 1.48497 * 109.46578 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46839 * 299.99610 * 18 16 14 22 22 O 1.43242 * 107.58458 * 338.64346 * 12 11 10 23 23 H 1.08998 * 109.46865 * 269.97957 * 1 2 3 24 24 H 1.08997 * 109.46761 * 29.97160 * 1 2 3 25 25 H 1.08995 * 109.47452 * 149.97650 * 1 2 3 26 26 H 1.07999 * 120.00093 * 0.02562 * 3 2 1 27 27 H 1.08004 * 120.00239 * 180.29704 * 4 3 2 28 28 H 1.08002 * 120.00476 * 179.74522 * 5 4 3 29 29 H 1.07999 * 119.99941 * 180.27784 * 6 5 4 30 30 H 1.09002 * 111.12244 * 322.55924 * 10 8 7 31 31 H 1.08996 * 111.12404 * 86.71959 * 10 8 7 32 32 H 1.08993 * 110.85072 * 152.31986 * 11 10 8 33 33 H 1.09003 * 110.84679 * 275.94458 * 11 10 8 34 34 H 1.08999 * 109.47166 * 59.99486 * 13 12 11 35 35 H 1.08996 * 109.47113 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.46806 * 300.00275 * 13 12 11 37 37 H 0.97009 * 119.99562 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2718 -0.0001 -0.0002 6 6 3.5806 -1.1970 -0.0006 7 6 2.1981 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.5493 -2.4214 -0.6171 10 6 1.0660 -2.9045 1.4471 11 6 0.9288 -4.4443 1.2987 12 6 2.0094 -4.7696 0.2450 13 6 1.4918 -5.8423 -0.7152 14 6 3.2604 -5.2569 0.9294 15 1 3.2930 -5.3307 2.0064 16 6 4.3638 -5.6075 0.1807 17 7 4.3243 -5.5170 -1.1307 18 14 5.9149 -6.2109 1.0291 19 1 5.6073 -7.4358 1.8100 20 1 6.9486 -6.5201 0.0088 21 1 6.4218 -5.1555 1.9426 22 8 2.2864 -3.5639 -0.4771 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6584 2.1326 0.0004 27 1 4.1205 2.1326 0.0106 28 1 5.3518 -0.0002 0.0001 29 1 4.1206 -2.1323 -0.0007 30 1 1.8607 -2.6466 2.1471 31 1 0.1201 -2.4528 1.7458 32 1 1.1439 -4.9457 2.2423 33 1 -0.0625 -4.7120 0.9330 34 1 0.5962 -5.4780 -1.2184 35 1 2.2590 -6.0677 -1.4559 36 1 1.2515 -6.7460 -0.1550 37 1 5.1005 -5.7640 -1.6575 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381134866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:06 Heat of formation + Delta-G solvation = -29.052829 kcal Electronic energy + Delta-G solvation = -18383.391148 eV Core-core repulsion = 15704.158703 eV Total energy + Delta-G solvation = -2679.232445 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.43024 -37.76113 -33.28006 -32.44462 -31.10055 -30.84758 -28.87153 -26.59402 -25.29902 -24.53403 -21.81500 -21.08897 -19.86755 -19.25728 -16.86151 -15.97915 -15.54571 -14.68681 -14.46531 -14.03312 -13.66279 -13.53306 -13.10281 -12.67661 -12.62292 -12.34128 -12.04937 -11.78816 -11.61205 -11.22599 -11.13279 -10.85235 -10.69687 -10.55585 -10.39912 -10.31542 -10.24947 -9.88685 -9.49128 -9.10276 -8.46982 -8.28424 -8.15632 -7.77445 -5.92616 -4.09104 1.79705 1.91094 3.31873 3.37204 3.39506 4.22965 4.43374 4.93731 5.19918 5.26701 5.38309 5.49679 5.55459 5.56713 5.66112 5.73647 5.86074 5.89325 6.01041 6.22816 6.28099 6.33548 6.40036 6.51994 6.61264 6.64806 6.79666 6.88234 6.91595 6.94699 7.10149 7.12359 7.25626 7.44013 7.55764 7.80088 8.12747 8.40127 8.65708 9.07164 9.61657 11.08638 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023666 B = 0.008452 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.837076 B = 3311.918059 C = 4060.633459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.132 4.132 4 C -0.129 4.129 5 C -0.134 4.134 6 C -0.079 4.079 7 C -0.071 4.071 8 C 0.112 3.888 9 H 0.058 0.942 10 C -0.136 4.136 11 C -0.143 4.143 12 C 0.228 3.772 13 C -0.141 4.141 14 C -0.531 4.531 15 H 0.057 0.943 16 C 0.082 3.918 17 N -0.860 5.860 18 Si 0.884 3.116 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 O -0.345 6.345 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.142 0.858 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.011 0.989 35 H 0.091 0.909 36 H 0.035 0.965 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 9.370 2.293 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.097 4.097 7 C -0.071 4.071 8 C 0.053 3.947 9 H 0.075 0.925 10 C -0.173 4.173 11 C -0.181 4.181 12 C 0.191 3.809 13 C -0.199 4.199 14 C -0.568 4.568 15 H 0.075 0.925 16 C -0.123 4.123 17 N -0.496 5.496 18 Si 0.712 3.288 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 O -0.264 6.264 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.109 0.891 36 H 0.054 0.946 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.116 9.340 1.952 10.827 hybrid contribution 0.829 -0.259 0.620 1.067 sum -4.287 9.080 2.571 10.365 Atomic orbital electron populations 1.20815 0.91869 1.02467 1.01953 1.19647 0.95649 0.92629 1.01084 1.20811 0.94189 0.96819 1.03202 1.21000 0.94260 0.97631 1.01848 1.21167 0.99634 0.92670 1.01706 1.21337 0.94096 0.98838 0.95453 1.19921 0.94281 0.93929 0.98946 1.21546 0.92241 0.87154 0.93753 0.92473 1.23095 1.00481 0.96712 0.97058 1.23227 0.99155 0.94380 1.01308 1.19645 0.91770 0.82532 0.86945 1.22005 0.98987 0.97803 1.01061 1.21188 0.98086 1.44878 0.92671 0.92489 1.24977 0.98300 0.94339 0.94716 1.69948 1.29506 1.45837 1.04307 0.86811 0.83295 0.79335 0.79404 1.20259 1.21239 1.20218 1.88769 1.59186 1.17930 1.60539 0.91505 0.92136 0.91228 0.86866 0.86948 0.86661 0.83990 0.90990 0.92237 0.91280 0.93032 0.97024 0.89085 0.94566 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.60 36.01 0.35 -1.16 16 2 C -0.09 -1.47 5.88 -104.62 -0.62 -2.08 16 3 C -0.13 -1.96 9.70 -39.59 -0.38 -2.34 16 4 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 5 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 6 C -0.08 -1.61 9.38 -39.58 -0.37 -1.98 16 7 C -0.07 -1.37 5.10 -104.62 -0.53 -1.90 16 8 C 0.11 2.29 3.10 -26.85 -0.08 2.21 16 9 H 0.06 1.11 6.31 -51.93 -0.33 0.79 16 10 C -0.14 -2.57 6.56 -24.48 -0.16 -2.74 16 11 C -0.14 -2.96 6.08 -24.78 -0.15 -3.11 16 12 C 0.23 5.65 0.82 -91.05 -0.07 5.57 16 13 C -0.14 -3.43 8.52 37.16 0.32 -3.12 16 14 C -0.53 -14.36 8.23 -34.44 -0.28 -14.64 16 15 H 0.06 1.53 7.48 -52.49 -0.39 1.13 16 16 C 0.08 2.24 5.26 -17.82 -0.09 2.14 16 17 N -0.86 -24.37 10.92 55.43 0.61 -23.77 16 18 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 O -0.34 -8.71 8.67 -35.23 -0.31 -9.02 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 25 H 0.07 0.94 6.09 -51.93 -0.32 0.62 16 26 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 28 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.14 3.34 7.29 -52.49 -0.38 2.95 16 30 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.41 7.60 -51.93 -0.39 1.01 16 33 H 0.05 0.97 7.85 -51.93 -0.41 0.56 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 2.46 6.01 -51.93 -0.31 2.15 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 298.58 15.07 4.50 4.50 Total: -1.00 -28.98 298.58 -8.57 -37.55 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.47 Total: 2.88 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: -2.88 Total: -28.17 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.61 Total: -23.77 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.31 Total: -9.02 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.98 -8.57 -37.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381134866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.498 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds