Wall clock time and date at job start Mon Mar 30 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 120.00105 * 2 1 4 4 C 1.38209 * 119.99877 * 179.72451 * 3 2 1 5 5 C 1.38260 * 120.00092 * 0.56013 * 4 3 2 6 6 C 1.38212 * 119.99650 * 359.45889 * 5 4 3 7 7 C 1.38216 * 119.99787 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.00020 * 359.97438 * 7 2 1 9 9 H 1.09001 * 110.27678 * 37.11146 * 8 7 2 10 10 C 1.54952 * 110.30825 * 275.02416 * 8 7 2 11 11 C 1.55303 * 100.94036 * 204.64242 * 10 8 7 12 12 C 1.54389 * 102.25593 * 34.13009 * 11 10 8 13 13 C 1.52997 * 109.83294 * 219.13270 * 12 11 10 14 14 C 1.50697 * 109.82898 * 98.24966 * 12 11 10 15 15 H 1.08001 * 119.99880 * 359.97438 * 14 12 11 16 16 C 1.37876 * 120.00020 * 180.02562 * 14 12 11 17 17 N 1.31511 * 119.99622 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99933 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47002 * 59.99946 * 18 16 14 20 20 H 1.48497 * 109.46578 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46839 * 299.99610 * 18 16 14 22 22 O 1.43242 * 107.58458 * 338.64346 * 12 11 10 23 23 H 1.08998 * 109.46865 * 269.97957 * 1 2 3 24 24 H 1.08997 * 109.46761 * 29.97160 * 1 2 3 25 25 H 1.08995 * 109.47452 * 149.97650 * 1 2 3 26 26 H 1.07999 * 120.00093 * 0.02562 * 3 2 1 27 27 H 1.08004 * 120.00239 * 180.29704 * 4 3 2 28 28 H 1.08002 * 120.00476 * 179.74522 * 5 4 3 29 29 H 1.07999 * 119.99941 * 180.27784 * 6 5 4 30 30 H 1.09002 * 111.12244 * 322.55924 * 10 8 7 31 31 H 1.08996 * 111.12404 * 86.71959 * 10 8 7 32 32 H 1.08993 * 110.85072 * 152.31986 * 11 10 8 33 33 H 1.09003 * 110.84679 * 275.94458 * 11 10 8 34 34 H 1.08999 * 109.47166 * 59.99486 * 13 12 11 35 35 H 1.08996 * 109.47113 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.46806 * 300.00275 * 13 12 11 37 37 H 0.97009 * 119.99562 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2718 -0.0001 -0.0002 6 6 3.5806 -1.1970 -0.0006 7 6 2.1981 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.5493 -2.4214 -0.6171 10 6 1.0660 -2.9045 1.4471 11 6 0.9288 -4.4443 1.2987 12 6 2.0094 -4.7696 0.2450 13 6 1.4918 -5.8423 -0.7152 14 6 3.2604 -5.2569 0.9294 15 1 3.2930 -5.3307 2.0064 16 6 4.3638 -5.6075 0.1807 17 7 4.3243 -5.5170 -1.1307 18 14 5.9149 -6.2109 1.0291 19 1 5.6073 -7.4358 1.8100 20 1 6.9486 -6.5201 0.0088 21 1 6.4218 -5.1555 1.9426 22 8 2.2864 -3.5639 -0.4771 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6584 2.1326 0.0004 27 1 4.1205 2.1326 0.0106 28 1 5.3518 -0.0002 0.0001 29 1 4.1206 -2.1323 -0.0007 30 1 1.8607 -2.6466 2.1471 31 1 0.1201 -2.4528 1.7458 32 1 1.1439 -4.9457 2.2423 33 1 -0.0625 -4.7120 0.9330 34 1 0.5962 -5.4780 -1.2184 35 1 2.2590 -6.0677 -1.4559 36 1 1.2515 -6.7460 -0.1550 37 1 5.1005 -5.7640 -1.6575 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381134866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:06 Heat of formation + Delta-G solvation = -44.105534 kcal Electronic energy + Delta-G solvation = -18384.043882 eV Core-core repulsion = 15704.158703 eV Total energy + Delta-G solvation = -2679.885179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89398 -39.32989 -35.10538 -33.84293 -32.80168 -32.43090 -30.52048 -27.77210 -27.30718 -26.18888 -23.30981 -22.45663 -21.41561 -20.97011 -18.75904 -17.38924 -17.10464 -16.58618 -15.91417 -15.49805 -15.34017 -14.80437 -14.74114 -14.31258 -13.98665 -13.85807 -13.49873 -13.21331 -13.09267 -12.96773 -12.78505 -12.57697 -12.43125 -12.23562 -12.07916 -12.01868 -11.76685 -11.60107 -11.16545 -10.93833 -10.55664 -9.83334 -9.54312 -9.32998 -8.00502 -6.23147 0.51124 0.59126 1.38823 1.39923 1.46862 2.42469 2.90102 3.13407 3.60062 3.89609 4.03604 4.07395 4.13811 4.23818 4.32709 4.45019 4.49917 4.72791 4.78455 4.83091 4.88821 4.93938 4.97361 5.03484 5.07007 5.09780 5.24700 5.26267 5.35608 5.40461 5.46968 5.65352 5.67466 5.75104 5.95325 6.13079 6.23957 6.37602 6.69111 7.17234 7.52161 8.99213 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023666 B = 0.008452 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.837076 B = 3311.918059 C = 4060.633459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.121 4.121 5 C -0.144 4.144 6 C -0.114 4.114 7 C -0.095 4.095 8 C 0.105 3.895 9 H 0.070 0.930 10 C -0.123 4.123 11 C -0.138 4.138 12 C 0.213 3.787 13 C -0.135 4.135 14 C -0.547 4.547 15 H 0.051 0.949 16 C 0.036 3.964 17 N -0.887 5.887 18 Si 0.941 3.059 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.277 1.277 22 O -0.379 6.379 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.154 0.846 27 H 0.150 0.850 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 11.812 3.164 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.162 4.162 6 C -0.132 4.132 7 C -0.096 4.096 8 C 0.047 3.953 9 H 0.087 0.913 10 C -0.161 4.161 11 C -0.176 4.176 12 C 0.176 3.824 13 C -0.193 4.193 14 C -0.584 4.584 15 H 0.069 0.931 16 C -0.166 4.166 17 N -0.525 5.525 18 Si 0.767 3.233 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.203 1.203 22 O -0.299 6.299 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.081 0.919 26 H 0.172 0.828 27 H 0.167 0.833 28 H 0.142 0.858 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.632 11.778 2.835 13.811 hybrid contribution 1.272 -0.928 0.331 1.609 sum -5.360 10.850 3.166 12.509 Atomic orbital electron populations 1.20887 0.89321 1.03493 1.03279 1.20016 0.97536 0.91796 0.99714 1.21313 0.94266 0.97804 1.00933 1.21410 0.94837 0.97885 0.99762 1.21318 1.00339 0.92611 1.01943 1.21069 0.94978 0.98090 0.99048 1.19956 0.93891 0.94734 1.00979 1.21774 0.92193 0.86684 0.94604 0.91277 1.23019 1.01680 0.95533 0.95824 1.23146 0.98831 0.95674 0.99945 1.19737 0.92109 0.82673 0.87916 1.21900 0.98588 0.98281 1.00500 1.21553 0.99561 1.44760 0.92559 0.93094 1.25656 1.01039 0.94702 0.95250 1.70098 1.29937 1.46994 1.05458 0.85908 0.80036 0.78957 0.78440 1.19256 1.21023 1.20266 1.88702 1.60856 1.19137 1.61224 0.89853 0.89464 0.91898 0.82839 0.83266 0.85751 0.89027 0.92793 0.88328 0.91425 0.90801 0.95322 0.92290 0.93939 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 9.60 71.24 0.68 -1.84 16 2 C -0.09 -2.71 5.88 -19.86 -0.12 -2.82 16 3 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 4 C -0.12 -3.27 10.05 22.27 0.22 -3.04 16 5 C -0.14 -4.92 10.05 22.27 0.22 -4.69 16 6 C -0.11 -4.81 9.38 22.27 0.21 -4.61 16 7 C -0.10 -3.69 5.10 -19.87 -0.10 -3.79 16 8 C 0.11 4.33 3.10 30.52 0.09 4.42 16 9 H 0.07 2.62 6.31 -2.39 -0.02 2.61 16 10 C -0.12 -4.54 6.56 32.05 0.21 -4.33 16 11 C -0.14 -5.62 6.08 31.86 0.19 -5.43 16 12 C 0.21 10.79 0.82 -11.07 -0.01 10.78 16 13 C -0.13 -6.71 8.52 71.98 0.61 -6.09 16 14 C -0.55 -30.60 8.23 25.60 0.21 -30.39 16 15 H 0.05 2.81 7.48 -2.91 -0.02 2.79 16 16 C 0.04 2.02 5.26 84.65 0.45 2.47 16 17 N -0.89 -52.69 10.92 21.45 0.23 -52.45 16 18 Si 0.94 44.62 29.54 68.60 2.03 46.65 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 O -0.38 -19.89 8.67 -148.98 -1.29 -21.18 16 23 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 25 H 0.06 1.49 6.09 -2.39 -0.01 1.48 16 26 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 27 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 28 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 29 H 0.09 4.73 7.29 -2.91 -0.02 4.71 16 30 H 0.05 2.16 8.05 -2.39 -0.02 2.14 16 31 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.07 2.72 7.60 -2.39 -0.02 2.71 16 33 H 0.07 2.64 7.85 -2.39 -0.02 2.62 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 3.31 6.01 -2.39 -0.01 3.29 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.26 14.64 8.31 -92.70 -0.77 13.86 16 Total: -1.00 -66.18 298.58 5.11 -61.08 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 1.04 Total: 18.28 kcal Atomic # 6 Polarization: -55.47 SS G_CDS: 3.10 Total: -52.37 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.23 Total: -52.45 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -1.29 Total: -21.18 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.18 5.11 -61.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381134866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.972 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds