Wall clock time and date at job start Mon Mar 30 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38251 * 119.99861 * 2 1 4 4 C 1.38219 * 119.99963 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99744 * 0.02562 * 4 3 2 6 6 C 1.38217 * 120.00166 * 359.76646 * 5 4 3 7 7 C 1.38212 * 119.99963 * 180.02562 * 2 1 3 8 8 C 1.50705 * 120.00145 * 359.97438 * 7 2 1 9 9 H 1.09002 * 110.67493 * 326.51302 * 8 7 2 10 10 C 1.55227 * 110.64277 * 89.36643 * 8 7 2 11 11 C 1.54813 * 101.98357 * 155.43734 * 10 8 7 12 12 C 1.54098 * 104.30472 * 339.26359 * 11 10 8 13 13 C 1.53001 * 109.87723 * 238.48010 * 12 11 10 14 14 C 1.50705 * 109.87915 * 117.48151 * 12 11 10 15 15 H 1.07996 * 119.99824 * 359.97438 * 14 12 11 16 16 C 1.37882 * 119.99915 * 180.02562 * 14 12 11 17 17 N 1.31512 * 120.00099 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99666 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46867 * 90.00090 * 18 16 14 20 20 H 1.48504 * 109.46851 * 209.99795 * 18 16 14 21 21 H 1.48502 * 109.47127 * 330.00086 * 18 16 14 22 22 O 1.43744 * 107.29564 * 357.90152 * 12 11 10 23 23 H 1.09008 * 109.46677 * 269.97558 * 1 2 3 24 24 H 1.08997 * 109.47393 * 29.97581 * 1 2 3 25 25 H 1.09002 * 109.47315 * 149.97693 * 1 2 3 26 26 H 1.08000 * 120.00221 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.99815 * 180.02562 * 4 3 2 28 28 H 1.08003 * 119.99494 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.99965 * 180.24922 * 6 5 4 30 30 H 1.08999 * 110.89081 * 37.30466 * 10 8 7 31 31 H 1.09003 * 111.02102 * 273.62980 * 10 8 7 32 32 H 1.09002 * 110.48794 * 220.51904 * 11 10 8 33 33 H 1.09002 * 110.48657 * 98.00326 * 11 10 8 34 34 H 1.08994 * 109.47271 * 59.99821 * 13 12 11 35 35 H 1.09006 * 109.47046 * 180.02562 * 13 12 11 36 36 H 1.09006 * 109.47224 * 299.99681 * 13 12 11 37 37 H 0.96996 * 120.00076 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0049 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 1 0.5158 -2.4103 0.5625 10 6 1.1565 -2.9677 -1.4530 11 6 1.0024 -4.4979 -1.2755 12 6 1.7184 -4.8008 0.0549 13 6 2.8454 -5.8089 -0.1786 14 6 0.7337 -5.3553 1.0521 15 1 -0.3022 -5.4824 0.7746 16 6 1.1553 -5.6992 2.3190 17 7 2.4167 -5.5439 2.6571 18 14 -0.0654 -6.3857 3.5552 19 1 -0.1097 -7.8654 3.4376 20 1 0.3572 -6.0108 4.9286 21 1 -1.4138 -5.8268 3.2821 22 8 2.2634 -3.5619 0.5387 23 1 -0.3633 -0.0004 1.0278 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6583 2.1326 0.0004 27 1 4.1204 2.1327 0.0010 28 1 5.3517 0.0001 0.0005 29 1 4.1206 -2.1323 0.0089 30 1 1.9949 -2.7347 -2.1094 31 1 0.2345 -2.5250 -1.8300 32 1 1.4841 -5.0277 -2.0973 33 1 -0.0511 -4.7704 -1.2125 34 1 3.5627 -5.3944 -0.8868 35 1 3.3468 -6.0187 0.7663 36 1 2.4292 -6.7324 -0.5815 37 1 2.7132 -5.7855 3.5485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381134868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:09 Heat of formation + Delta-G solvation = -30.270525 kcal Electronic energy + Delta-G solvation = -18288.559574 eV Core-core repulsion = 15609.274326 eV Total energy + Delta-G solvation = -2679.285248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.44762 -37.77391 -33.24467 -32.47454 -31.13555 -30.84455 -28.92064 -26.62903 -25.21997 -24.60254 -21.95235 -21.11296 -19.83391 -19.27911 -16.46048 -16.16282 -15.63104 -14.74182 -14.59418 -14.05608 -13.63939 -13.55763 -13.21422 -12.78953 -12.54388 -12.38766 -11.98547 -11.77699 -11.57647 -11.25681 -11.06108 -10.89688 -10.81750 -10.70456 -10.46806 -10.35390 -10.05998 -9.84124 -9.45202 -9.14200 -8.46611 -8.37525 -8.20143 -7.83019 -5.92235 -4.09725 1.72291 1.81133 3.30389 3.37939 3.40166 4.13664 4.43454 4.94672 5.15717 5.25610 5.33896 5.46669 5.51390 5.57687 5.64261 5.82878 5.86784 5.90353 6.03366 6.14052 6.29763 6.33066 6.41072 6.48519 6.59663 6.64075 6.73509 6.83482 6.88789 6.95148 6.99553 7.11574 7.18462 7.42591 7.50360 7.80763 8.07430 8.37697 8.62622 9.00230 9.62334 11.08848 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025735 B = 0.007166 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.743535 B = 3906.591297 C = 4011.362570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C -0.129 4.129 4 C -0.130 4.130 5 C -0.132 4.132 6 C -0.088 4.088 7 C -0.064 4.064 8 C 0.117 3.883 9 H 0.069 0.931 10 C -0.142 4.142 11 C -0.143 4.143 12 C 0.225 3.775 13 C -0.130 4.130 14 C -0.543 4.543 15 H 0.056 0.944 16 C 0.082 3.918 17 N -0.859 5.859 18 Si 0.885 3.115 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 O -0.347 6.347 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.014 0.986 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.342 9.714 -6.214 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.106 4.106 7 C -0.064 4.064 8 C 0.059 3.941 9 H 0.087 0.913 10 C -0.180 4.180 11 C -0.180 4.180 12 C 0.187 3.813 13 C -0.188 4.188 14 C -0.580 4.580 15 H 0.074 0.926 16 C -0.124 4.124 17 N -0.496 5.496 18 Si 0.713 3.287 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 O -0.267 6.267 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.149 0.851 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.109 0.891 36 H 0.056 0.944 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.022 9.697 -5.928 11.365 hybrid contribution -0.807 -0.367 0.669 1.110 sum -0.829 9.330 -5.260 10.743 Atomic orbital electron populations 1.20836 0.91609 1.02483 1.02415 1.19687 0.95891 0.92517 1.00404 1.20859 0.94208 0.96926 1.02674 1.21001 0.94264 0.97662 1.01832 1.21120 0.99534 0.92644 1.01754 1.21136 0.93999 0.98336 0.97147 1.19860 0.94089 0.94001 0.98477 1.21611 0.93593 0.86348 0.92588 0.91343 1.23097 1.00547 0.97128 0.97200 1.23097 1.01425 0.93857 0.99671 1.19623 0.90914 0.82516 0.88229 1.21788 0.97891 0.97173 1.01925 1.21441 0.94861 1.43998 0.97747 0.92607 1.24984 0.94910 0.94359 0.98100 1.69943 1.14481 1.45659 1.19500 0.86730 0.81784 0.79260 0.80943 1.20626 1.21186 1.19940 1.89030 1.51508 1.14219 1.71896 0.91183 0.92048 0.91087 0.86682 0.86814 0.86601 0.85054 0.91966 0.92039 0.92801 0.91766 0.96737 0.89103 0.94367 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.24 36.01 0.33 -1.29 16 2 C -0.08 -1.38 5.88 -104.63 -0.62 -2.00 16 3 C -0.13 -1.86 9.70 -39.58 -0.38 -2.24 16 4 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 5 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 6 C -0.09 -1.64 9.38 -39.58 -0.37 -2.01 16 7 C -0.06 -1.22 5.12 -104.62 -0.54 -1.75 16 8 C 0.12 2.48 2.67 -26.70 -0.07 2.41 16 9 H 0.07 1.51 6.98 -51.93 -0.36 1.15 16 10 C -0.14 -2.66 6.43 -24.60 -0.16 -2.82 16 11 C -0.14 -2.98 6.26 -25.20 -0.16 -3.14 16 12 C 0.22 5.60 0.74 -91.20 -0.07 5.53 16 13 C -0.13 -3.18 8.44 37.16 0.31 -2.86 16 14 C -0.54 -14.81 8.19 -34.44 -0.28 -15.09 16 15 H 0.06 1.50 7.33 -52.49 -0.38 1.12 16 16 C 0.08 2.26 5.26 -17.82 -0.09 2.17 16 17 N -0.86 -24.70 10.93 55.43 0.61 -24.09 16 18 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 O -0.35 -8.84 8.98 -35.23 -0.32 -9.15 16 23 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 24 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.07 1.01 5.96 -51.93 -0.31 0.70 16 26 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 27 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.13 2.61 7.36 -52.49 -0.39 2.22 16 30 H 0.06 1.12 8.05 -51.93 -0.42 0.71 16 31 H 0.06 1.01 7.47 -51.93 -0.39 0.62 16 32 H 0.05 1.04 7.70 -51.93 -0.40 0.64 16 33 H 0.06 1.32 7.39 -51.93 -0.38 0.94 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 2.46 6.00 -51.93 -0.31 2.14 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 297.43 15.07 4.48 4.48 Total: -1.00 -29.51 297.43 -8.57 -38.08 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.44 Total: 2.24 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -2.89 Total: -27.78 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.61 Total: -24.09 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.32 Total: -9.15 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.51 -8.57 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381134868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.814 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds