Wall clock time and date at job start Mon Mar 30 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00235 * 2 1 4 4 C 1.38212 * 120.00305 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99874 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99908 * 179.97438 * 5 4 3 7 7 C 1.38215 * 120.00294 * 359.95673 * 5 4 3 8 8 C 1.50702 * 120.00248 * 179.72478 * 7 5 4 9 9 H 1.08990 * 109.82306 * 35.69839 * 8 7 5 10 10 C 1.54385 * 109.82537 * 274.81435 * 8 7 5 11 11 C 1.55452 * 102.18353 * 219.18202 * 10 8 7 12 12 C 1.54948 * 100.98807 * 34.04077 * 11 10 8 13 13 H 1.08992 * 110.31192 * 82.52522 * 12 11 10 14 14 C 1.50710 * 110.39333 * 204.64861 * 12 11 10 15 15 H 1.08003 * 119.99430 * 357.21545 * 14 12 11 16 16 C 1.37867 * 120.00062 * 177.21424 * 14 12 11 17 17 N 1.31512 * 120.00413 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99897 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46963 * 90.00118 * 18 16 14 20 20 H 1.48503 * 109.47100 * 210.00212 * 18 16 14 21 21 H 1.48496 * 109.47063 * 329.99896 * 18 16 14 22 22 O 1.43232 * 109.82929 * 156.59044 * 8 7 5 23 23 C 1.38218 * 120.00066 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47359 * 90.00115 * 1 2 3 25 25 H 1.09009 * 109.47217 * 210.00028 * 1 2 3 26 26 H 1.09000 * 109.46819 * 329.99514 * 1 2 3 27 27 H 1.08000 * 119.99718 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.99798 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.46961 * 269.97666 * 6 5 4 30 30 H 1.08993 * 109.47341 * 29.98195 * 6 5 4 31 31 H 1.09001 * 109.46864 * 149.98279 * 6 5 4 32 32 H 1.08999 * 110.85114 * 337.31880 * 10 8 7 33 33 H 1.09002 * 110.84940 * 100.94113 * 10 8 7 34 34 H 1.08997 * 111.06093 * 276.12832 * 11 10 8 35 35 H 1.09002 * 111.14689 * 151.99158 * 11 10 8 36 36 H 0.97000 * 120.00489 * 180.02562 * 17 16 14 37 37 H 1.08001 * 119.99699 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 3.5807 -1.1970 -0.0012 8 6 4.3342 -2.5021 -0.0087 9 1 5.2432 -2.4075 0.5852 10 6 4.6940 -2.8907 -1.4588 11 6 4.4686 -4.4288 -1.4519 12 6 3.2753 -4.5480 -0.4708 13 1 2.3372 -4.3539 -0.9907 14 6 3.2489 -5.9163 0.1604 15 1 3.9748 -6.6603 -0.1329 16 6 2.2984 -6.2182 1.1122 17 7 1.4142 -5.3124 1.4691 18 14 2.2653 -7.9145 1.8940 19 1 3.1219 -7.9171 3.1071 20 1 0.8709 -8.2583 2.2718 21 1 2.7769 -8.9163 0.9246 22 8 3.5091 -3.5426 0.5281 23 6 2.1981 -1.1970 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1327 -0.0010 29 1 6.1412 0.0001 -1.0307 30 1 6.1425 0.8899 0.5109 31 1 6.1424 -0.8901 0.5107 32 1 4.0248 -2.4041 -2.1683 33 1 5.7344 -2.6507 -1.6780 34 1 5.3453 -4.9514 -1.0693 35 1 4.1993 -4.7913 -2.4439 36 1 0.7456 -5.5247 2.1391 37 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381237205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:44 Heat of formation + Delta-G solvation = -55.571235 kcal Electronic energy + Delta-G solvation = -18018.376647 eV Core-core repulsion = 15337.994277 eV Total energy + Delta-G solvation = -2680.382369 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99595 -39.22973 -35.14800 -34.54048 -32.61736 -32.38111 -30.05704 -29.64248 -26.66877 -25.59218 -23.75846 -22.25688 -22.12876 -20.71636 -18.64704 -17.44449 -17.00951 -16.58242 -16.22293 -15.80435 -15.51040 -14.86768 -14.70514 -14.31929 -14.02849 -13.86595 -13.66631 -13.56938 -13.34409 -12.90531 -12.75367 -12.67806 -12.40963 -12.31093 -12.26174 -12.05050 -11.85648 -11.72681 -11.37087 -11.01955 -10.71421 -9.94644 -9.51018 -9.20461 -8.14928 -6.36315 0.48273 0.57045 1.39088 1.40881 1.51334 2.39843 2.83916 3.07841 3.67770 3.80037 3.91201 4.01388 4.06580 4.19177 4.25257 4.37745 4.46326 4.56243 4.66427 4.77218 4.78378 4.83933 4.88299 4.91595 4.93917 5.00987 5.09110 5.14688 5.21470 5.30743 5.42786 5.54217 5.62663 5.72939 5.81008 5.92088 6.17194 6.24207 6.59709 7.05168 7.40048 8.92731 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.007035 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.064428 B = 3978.940346 C = 4688.848389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.109 4.109 3 C -0.125 4.125 4 C -0.120 4.120 5 C -0.098 4.098 6 C -0.112 4.112 7 C -0.102 4.102 8 C 0.098 3.902 9 H 0.078 0.922 10 C -0.127 4.127 11 C -0.140 4.140 12 C 0.204 3.796 13 H -0.014 1.014 14 C -0.558 4.558 15 H 0.067 0.933 16 C 0.022 3.978 17 N -0.900 5.900 18 Si 0.962 3.038 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.260 1.260 22 O -0.384 6.384 23 C -0.119 4.119 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.260 0.740 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 13.018 -4.664 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.109 4.109 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.098 4.098 6 C -0.168 4.168 7 C -0.102 4.102 8 C 0.040 3.960 9 H 0.096 0.904 10 C -0.164 4.164 11 C -0.178 4.178 12 C 0.149 3.851 13 H 0.004 0.996 14 C -0.595 4.595 15 H 0.085 0.915 16 C -0.180 4.180 17 N -0.537 5.537 18 Si 0.786 3.214 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.184 1.184 22 O -0.304 6.304 23 C -0.137 4.137 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.167 0.833 28 H 0.171 0.829 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.840 13.043 -4.362 14.580 hybrid contribution -0.526 -1.231 0.446 1.411 sum 4.314 11.812 -3.916 13.170 Atomic orbital electron populations 1.20769 0.90320 1.02753 1.02688 1.20181 0.97154 0.92960 1.00644 1.21278 0.94655 0.97352 1.00941 1.21303 0.94195 0.97801 1.00501 1.19993 0.97482 0.91838 1.00502 1.20864 0.89407 1.03320 1.03250 1.20297 0.94000 0.95433 1.00520 1.21716 0.92745 0.86423 0.95093 0.90431 1.23021 1.02856 0.95403 0.95139 1.23253 0.99126 0.95541 0.99848 1.20372 0.91754 0.86960 0.86012 0.99629 1.21556 1.15677 0.97318 1.24967 0.91500 1.25978 0.94472 1.00904 0.96674 1.70194 1.17195 1.35516 1.30834 0.85520 0.77399 0.79606 0.78853 1.20180 1.20659 1.18367 1.88779 1.69687 1.32875 1.39046 1.20927 0.94707 0.97517 1.00585 0.90496 0.93535 0.89350 0.83312 0.82866 0.89771 0.89611 0.92105 0.91695 0.87885 0.91090 0.90473 0.93112 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.13 10.01 71.24 0.71 -2.42 16 2 C -0.11 -3.73 5.88 -19.86 -0.12 -3.85 16 3 C -0.12 -3.40 9.70 22.27 0.22 -3.18 16 4 C -0.12 -3.13 9.70 22.27 0.22 -2.92 16 5 C -0.10 -2.99 5.88 -19.87 -0.12 -3.10 16 6 C -0.11 -2.57 9.60 71.24 0.68 -1.89 16 7 C -0.10 -4.01 4.93 -19.86 -0.10 -4.10 16 8 C 0.10 4.14 3.22 30.32 0.10 4.24 16 9 H 0.08 3.06 6.21 -2.39 -0.01 3.04 16 10 C -0.13 -4.54 6.55 31.91 0.21 -4.33 16 11 C -0.14 -5.86 6.54 32.10 0.21 -5.65 16 12 C 0.20 11.12 3.27 30.52 0.10 11.22 16 13 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 14 C -0.56 -32.51 8.81 25.60 0.23 -32.28 16 15 H 0.07 3.71 7.77 -2.91 -0.02 3.69 16 16 C 0.02 1.28 5.42 84.65 0.46 1.74 16 17 N -0.90 -56.17 12.93 21.44 0.28 -55.89 16 18 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 O -0.38 -21.17 9.04 -148.98 -1.35 -22.52 16 23 C -0.12 -5.07 9.02 22.27 0.20 -4.87 16 24 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 1.53 8.09 -2.38 -0.02 1.51 16 26 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 27 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 31 H 0.06 1.51 6.05 -2.39 -0.01 1.50 16 32 H 0.06 2.31 7.84 -2.39 -0.02 2.29 16 33 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.07 2.88 8.05 -2.39 -0.02 2.86 16 35 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.09 4.52 7.33 -2.91 -0.02 4.50 16 Total: -1.00 -70.94 304.01 4.99 -65.94 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.04 Total: 16.71 kcal Atomic # 6 Polarization: -54.40 SS G_CDS: 3.00 Total: -51.40 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.28 Total: -55.89 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -1.35 Total: -22.52 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.94 4.99 -65.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381237205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.373 kcal (2) G-P(sol) polarization free energy of solvation -70.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds