Wall clock time and date at job start Mon Mar 30 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38235 * 120.00064 * 2 1 4 4 C 1.38237 * 119.99950 * 179.97438 * 3 2 1 5 5 C 1.38240 * 120.00202 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00287 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.48076 * 24.99878 * 6 5 4 8 8 C 1.53098 * 109.48068 * 264.97470 * 6 5 4 9 9 C 1.53173 * 109.16229 * 182.39622 * 8 6 5 10 10 C 1.53171 * 109.03669 * 56.98045 * 9 8 6 11 11 C 1.53090 * 109.16805 * 303.01726 * 10 9 8 12 12 H 1.08998 * 109.48148 * 177.59657 * 11 10 9 13 13 C 1.50700 * 109.48316 * 297.62680 * 11 10 9 14 14 H 1.08000 * 119.99659 * 359.97438 * 13 11 10 15 15 C 1.37869 * 120.00117 * 179.97438 * 13 11 10 16 16 N 1.31514 * 120.00297 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00059 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46961 * 60.00250 * 17 15 13 19 19 H 1.48494 * 109.47304 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47091 * 300.00563 * 17 15 13 21 21 O 1.42901 * 109.48907 * 145.02634 * 6 5 4 22 22 C 1.38241 * 119.99523 * 0.27804 * 5 4 3 23 23 C 1.38234 * 120.00272 * 359.50830 * 22 5 4 24 24 H 1.09007 * 109.47451 * 90.00226 * 1 2 3 25 25 H 1.09007 * 109.47459 * 210.00103 * 1 2 3 26 26 H 1.09003 * 109.47204 * 329.99892 * 1 2 3 27 27 H 1.07993 * 119.99879 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.00350 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.51953 * 302.30623 * 8 6 5 30 30 H 1.09006 * 109.51784 * 62.48858 * 8 6 5 31 31 H 1.08994 * 109.54460 * 176.85324 * 9 8 6 32 32 H 1.09005 * 109.54293 * 297.02794 * 9 8 6 33 33 H 1.09002 * 109.51983 * 62.92805 * 10 9 8 34 34 H 1.09007 * 109.52498 * 183.04603 * 10 9 8 35 35 H 0.96996 * 120.00506 * 179.97438 * 16 15 13 36 36 H 1.08007 * 119.99863 * 179.73330 * 22 5 4 37 37 H 1.07994 * 120.00379 * 180.27303 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7786 -0.0001 0.0028 7 1 6.1419 0.9314 0.4369 8 6 6.2903 -0.1272 -1.4346 9 6 7.8208 -0.1868 -1.4200 10 6 8.2669 -1.3574 -0.5385 11 6 7.6789 -1.1829 0.8642 12 1 7.9580 -2.0350 1.4839 13 6 8.2154 0.0836 1.4800 14 1 8.9068 0.7022 0.9270 15 6 7.8237 0.4526 2.7493 16 7 6.9822 -0.3008 3.4230 17 14 8.4892 2.0222 3.5130 18 1 8.1094 3.1832 2.6686 19 1 7.9188 2.1913 4.8735 20 1 9.9691 1.9395 3.6040 21 8 6.2548 -1.1037 0.7758 22 6 3.5804 -1.1972 -0.0037 23 6 2.1981 -1.1972 0.0003 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6581 2.1324 -0.0004 28 1 4.1205 2.1323 0.0001 29 1 5.8945 -1.0385 -1.8828 30 1 5.9648 0.7363 -2.0147 31 1 8.1897 -0.3334 -2.4351 32 1 8.2182 0.7455 -1.0188 33 1 7.9110 -2.2935 -0.9688 34 1 9.3551 -1.3744 -0.4788 35 1 6.7069 -0.0415 4.3161 36 1 4.1204 -2.1326 -0.0072 37 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390481438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:34 Heat of formation + Delta-G solvation = -56.886273 kcal Electronic energy + Delta-G solvation = -18146.151849 eV Core-core repulsion = 15465.712455 eV Total energy + Delta-G solvation = -2680.439394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.70706 -39.33502 -34.94535 -34.15322 -33.84161 -31.73870 -31.31639 -28.25054 -27.00111 -24.52161 -23.75927 -23.48769 -21.54495 -20.70081 -18.34943 -17.48287 -16.71433 -16.50752 -16.08297 -15.72412 -15.37174 -15.20636 -14.79290 -14.62281 -14.26144 -14.17561 -13.62505 -13.36531 -13.02912 -12.94476 -12.78812 -12.69720 -12.51495 -12.36665 -12.02543 -11.81296 -11.78650 -11.48096 -11.25323 -10.71297 -10.46997 -9.76725 -9.73648 -9.20544 -8.08824 -6.30080 0.49668 0.58016 1.37956 1.38586 1.46312 2.39367 2.88832 3.13170 3.53912 3.98875 4.07054 4.13045 4.19677 4.26022 4.26965 4.46862 4.53798 4.60519 4.71117 4.78633 4.90496 4.92734 4.94275 5.00048 5.06554 5.17928 5.25169 5.28071 5.36463 5.38144 5.49123 5.56996 5.65982 5.74635 5.80397 5.91777 6.17008 6.21737 6.76716 7.15970 7.47156 8.95211 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022175 B = 0.007750 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.369484 B = 3612.180896 C = 4248.389768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.100 4.100 3 C -0.125 4.125 4 C -0.127 4.127 5 C -0.090 4.090 6 C 0.143 3.857 7 H 0.035 0.965 8 C -0.128 4.128 9 C -0.105 4.105 10 C -0.135 4.135 11 C 0.204 3.796 12 H 0.025 0.975 13 C -0.562 4.562 14 H 0.058 0.942 15 C 0.029 3.971 16 N -0.896 5.896 17 Si 0.943 3.057 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.267 1.267 21 O -0.388 6.388 22 C -0.108 4.108 23 C -0.129 4.129 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.121 0.879 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.258 0.742 36 H 0.109 0.891 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.565 2.033 -9.185 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.100 4.100 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.090 4.090 6 C 0.084 3.916 7 H 0.053 0.947 8 C -0.166 4.166 9 C -0.142 4.142 10 C -0.173 4.173 11 C 0.148 3.852 12 H 0.042 0.958 13 C -0.600 4.600 14 H 0.076 0.924 15 C -0.173 4.173 16 N -0.533 5.533 17 Si 0.769 3.231 18 H -0.195 1.195 19 H -0.213 1.213 20 H -0.192 1.192 21 O -0.308 6.308 22 C -0.127 4.127 23 C -0.147 4.147 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.139 0.861 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.128 0.872 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.778 1.864 -8.935 13.376 hybrid contribution 0.996 0.735 0.852 1.503 sum -8.782 2.599 -8.083 12.216 Atomic orbital electron populations 1.20792 0.88657 1.03550 1.03232 1.20282 0.97789 0.92570 0.99348 1.21226 0.93087 0.98835 1.01083 1.21118 0.95273 0.97040 1.01068 1.19981 0.94724 0.94356 0.99934 1.20387 0.89098 0.91195 0.90872 0.94671 1.22043 0.96483 1.01933 0.96153 1.21430 0.95030 0.98585 0.99174 1.22059 1.00259 0.97924 0.97053 1.19634 0.78633 0.95416 0.91477 0.95753 1.21771 1.28263 1.09236 1.00696 0.92359 1.25781 0.94564 0.99445 0.97541 1.70190 1.32534 1.38885 1.11683 0.85852 0.79089 0.80634 0.77556 1.19492 1.21250 1.19156 1.87849 1.23974 1.46830 1.72102 1.21023 0.94769 0.97574 0.99301 1.21271 0.93268 0.98877 1.01282 0.89877 0.90882 0.90596 0.83649 0.86109 0.91985 0.90697 0.90514 0.92718 0.92884 0.91912 0.93336 0.87243 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 10.01 71.23 0.71 -1.23 16 2 C -0.10 -2.73 5.88 -19.87 -0.12 -2.85 16 3 C -0.12 -3.61 9.70 22.27 0.22 -3.40 16 4 C -0.13 -4.50 9.68 22.27 0.22 -4.28 16 5 C -0.09 -3.66 5.00 -19.86 -0.10 -3.76 16 6 C 0.14 6.47 2.58 29.88 0.08 6.55 16 7 H 0.04 1.81 7.00 -2.39 -0.02 1.79 16 8 C -0.13 -4.80 5.40 30.68 0.17 -4.64 16 9 C -0.10 -3.89 5.77 30.71 0.18 -3.71 16 10 C -0.14 -5.65 5.59 30.68 0.17 -5.48 16 11 C 0.20 10.71 3.16 29.88 0.09 10.81 16 12 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 13 C -0.56 -30.94 6.59 25.60 0.17 -30.77 16 14 H 0.06 3.11 6.87 -2.91 -0.02 3.09 16 15 C 0.03 1.64 5.40 84.65 0.46 2.10 16 16 N -0.90 -54.27 12.84 21.44 0.28 -53.99 16 17 Si 0.94 44.08 29.54 68.60 2.03 46.10 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 O -0.39 -20.50 8.79 -148.98 -1.31 -21.81 16 22 C -0.11 -4.15 9.35 22.27 0.21 -3.94 16 23 C -0.13 -3.98 9.70 22.27 0.22 -3.77 16 24 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 26 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 27 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 28 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 2.18 6.86 -2.38 -0.02 2.16 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 2.49 8.14 -2.38 -0.02 2.48 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.11 4.40 7.64 -2.91 -0.02 4.38 16 37 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -65.27 300.34 4.69 -60.58 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.03 Total: 17.49 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 2.67 Total: -48.37 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.28 Total: -53.99 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -1.31 Total: -21.81 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -65.27 4.69 -60.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390481438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.694 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds