Wall clock time and date at job start Mon Mar 30 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38230 * 120.00221 * 2 1 4 4 C 1.38244 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00047 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99823 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.48884 * 340.02562 * 6 5 4 8 8 C 1.53096 * 109.48331 * 100.05295 * 6 5 4 9 9 C 1.53172 * 109.16237 * 177.59097 * 8 6 5 10 10 C 1.53174 * 109.03844 * 303.01800 * 9 8 6 11 11 C 1.53093 * 109.16375 * 56.98496 * 10 9 8 12 12 H 1.08996 * 109.48657 * 182.40855 * 11 10 9 13 13 C 1.50702 * 109.49248 * 62.37770 * 11 10 9 14 14 H 1.07999 * 119.99457 * 0.05024 * 13 11 10 15 15 C 1.37878 * 120.00119 * 180.02562 * 13 11 10 16 16 N 1.31512 * 119.99690 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00038 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47239 * 89.99507 * 17 15 13 19 19 H 1.48494 * 109.46955 * 209.99978 * 17 15 13 20 20 H 1.48502 * 109.47205 * 329.99722 * 17 15 13 21 21 O 1.42905 * 109.41141 * 302.39044 * 11 10 9 22 22 C 1.38231 * 120.00079 * 0.26780 * 5 4 3 23 23 C 1.38231 * 120.00129 * 359.54459 * 22 5 4 24 24 H 1.08995 * 109.47321 * 89.99916 * 1 2 3 25 25 H 1.09000 * 109.47445 * 210.00156 * 1 2 3 26 26 H 1.09000 * 109.47441 * 329.99966 * 1 2 3 27 27 H 1.07994 * 120.00097 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.99240 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.51862 * 297.49616 * 8 6 5 30 30 H 1.08993 * 109.51849 * 57.68662 * 8 6 5 31 31 H 1.09002 * 109.54386 * 183.15042 * 9 8 6 32 32 H 1.09006 * 109.62035 * 62.93555 * 9 8 6 33 33 H 1.09001 * 109.52606 * 297.07957 * 10 9 8 34 34 H 1.09003 * 109.57599 * 176.91695 * 10 9 8 35 35 H 0.97003 * 119.99666 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.00135 * 179.73218 * 22 5 4 37 37 H 1.08000 * 120.00605 * 180.22738 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2716 -0.0002 0.0016 6 6 5.7786 -0.0003 0.0028 7 1 6.1426 0.9654 -0.3484 8 6 6.2881 -0.2516 1.4244 9 6 7.8186 -0.3101 1.4070 10 6 8.2659 -1.4000 0.4281 11 6 7.6801 -1.1044 -0.9551 12 1 7.9598 -1.8996 -1.6460 13 6 8.2176 0.2105 -1.4583 14 1 8.9086 0.7785 -0.8530 15 6 7.8277 0.6882 -2.6915 16 7 6.9871 -0.0040 -3.4289 17 14 8.4946 2.3177 -3.3155 18 1 9.7457 2.0806 -4.0795 19 1 7.4883 2.9582 -4.1999 20 1 8.7800 3.2097 -2.1630 21 8 6.2558 -1.0328 -0.8623 22 6 3.5804 -1.1973 -0.0035 23 6 2.1981 -1.1973 -0.0001 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6582 2.1324 0.0004 28 1 4.1205 2.1323 0.0001 29 1 5.9620 0.5585 2.0767 30 1 5.8916 -1.1982 1.7914 31 1 8.1860 -0.5443 2.4061 32 1 8.2181 0.6527 1.0882 33 1 7.9092 -2.3699 0.7749 34 1 9.3542 -1.4124 0.3676 35 1 6.7130 0.3319 -4.2967 36 1 4.1204 -2.1326 -0.0070 37 1 1.6580 -2.1325 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390481443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:40 Heat of formation + Delta-G solvation = -41.822734 kcal Electronic energy + Delta-G solvation = -18145.397106 eV Core-core repulsion = 15465.610917 eV Total energy + Delta-G solvation = -2679.786189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.22767 -37.72988 -33.29319 -32.44340 -32.02968 -30.43157 -29.75149 -26.71408 -25.25595 -22.89612 -22.21809 -22.02798 -20.15464 -18.90445 -16.40619 -15.94808 -15.00239 -14.82276 -14.61961 -14.10934 -13.83527 -13.55767 -13.42626 -13.12937 -12.90848 -12.67763 -12.06100 -11.88162 -11.76619 -11.42819 -11.20959 -10.92861 -10.79183 -10.61608 -10.54363 -10.27639 -10.15613 -9.68297 -9.57430 -8.74487 -8.45089 -8.42652 -8.08259 -7.66151 -5.97475 -4.12814 1.82014 1.90536 3.28191 3.36129 3.37721 4.22861 4.41069 5.03849 5.16815 5.22346 5.37268 5.46940 5.58752 5.68758 5.71451 5.79015 5.87833 5.93209 5.95963 6.13359 6.21148 6.25401 6.40815 6.47868 6.52253 6.55719 6.68875 6.86690 6.89822 6.98447 7.04558 7.06124 7.09150 7.35373 7.51879 7.71424 7.88633 8.23157 8.83652 9.09768 9.59365 11.06684 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.007772 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.262758 B = 3601.930926 C = 4259.381313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.126 4.126 4 C -0.111 4.111 5 C -0.058 4.058 6 C 0.141 3.859 7 H 0.070 0.930 8 C -0.136 4.136 9 C -0.109 4.109 10 C -0.142 4.142 11 C 0.212 3.788 12 H 0.061 0.939 13 C -0.559 4.559 14 H 0.057 0.943 15 C 0.080 3.920 16 N -0.856 5.856 17 Si 0.881 3.119 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 O -0.365 6.365 22 C -0.089 4.089 23 C -0.128 4.128 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.260 0.740 36 H 0.124 0.876 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 0.244 7.867 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.144 4.144 4 C -0.129 4.129 5 C -0.058 4.058 6 C 0.083 3.917 7 H 0.088 0.912 8 C -0.174 4.174 9 C -0.146 4.146 10 C -0.180 4.180 11 C 0.156 3.844 12 H 0.078 0.922 13 C -0.597 4.597 14 H 0.075 0.925 15 C -0.126 4.126 16 N -0.492 5.492 17 Si 0.708 3.292 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 O -0.284 6.284 22 C -0.107 4.107 23 C -0.146 4.146 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.325 0.097 7.593 11.268 hybrid contribution 0.616 1.136 -0.384 1.348 sum -7.709 1.234 7.209 10.627 Atomic orbital electron populations 1.20715 0.91909 1.02036 1.01824 1.19780 0.95471 0.93433 1.01734 1.20854 0.94025 0.97062 1.02493 1.20979 0.93916 0.97728 1.00289 1.19990 0.95815 0.92894 0.97138 1.20376 0.87397 0.94994 0.88951 0.91204 1.22109 0.96623 1.00715 0.97941 1.21443 0.95000 1.00617 0.97539 1.22182 1.00124 0.96666 0.99014 1.19716 0.78012 0.96959 0.89725 0.92153 1.21524 1.28769 1.06565 1.02813 0.92515 1.25026 0.94267 0.96820 0.96536 1.70056 1.30820 1.37428 1.10900 0.86791 0.78856 0.84515 0.79010 1.20541 1.21172 1.19840 1.87931 1.24219 1.51486 1.64760 1.21018 0.93355 0.98508 0.97825 1.20968 0.94344 0.97007 1.02246 0.91677 0.92033 0.92090 0.86761 0.86384 0.92810 0.92649 0.94064 0.91299 0.94091 0.92585 0.93041 0.85771 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.00 0.36 -0.86 16 2 C -0.10 -1.57 5.88 -104.63 -0.62 -2.18 16 3 C -0.13 -1.99 9.70 -39.58 -0.38 -2.37 16 4 C -0.11 -2.00 9.67 -39.58 -0.38 -2.38 16 5 C -0.06 -1.17 4.97 -104.63 -0.52 -1.69 16 6 C 0.14 3.12 2.58 -27.83 -0.07 3.04 16 7 H 0.07 1.71 6.95 -51.93 -0.36 1.35 16 8 C -0.14 -2.58 5.40 -26.59 -0.14 -2.72 16 9 C -0.11 -2.08 5.77 -26.55 -0.15 -2.23 16 10 C -0.14 -2.97 5.59 -26.59 -0.15 -3.12 16 11 C 0.21 5.34 3.16 -27.83 -0.09 5.25 16 12 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 13 C -0.56 -14.99 6.59 -34.44 -0.23 -15.22 16 14 H 0.06 1.50 6.87 -52.49 -0.36 1.14 16 15 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 16 N -0.86 -24.98 12.84 55.43 0.71 -24.27 16 17 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 O -0.36 -9.25 8.95 -35.23 -0.32 -9.56 16 22 C -0.09 -1.67 9.36 -39.59 -0.37 -2.04 16 23 C -0.13 -2.05 9.70 -39.58 -0.38 -2.43 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.12 1.99 8.04 -52.49 -0.42 1.57 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.40 6.85 -51.93 -0.36 1.04 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.12 2.34 7.77 -52.49 -0.41 1.94 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -29.33 300.52 -9.01 -38.34 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.69 Total: 1.74 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -3.23 Total: -26.84 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.71 Total: -24.27 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.32 Total: -9.56 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.33 -9.01 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390481443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.480 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds