Wall clock time and date at job start Mon Mar 30 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38230 * 120.00221 * 2 1 4 4 C 1.38244 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00047 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99823 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.48884 * 340.02562 * 6 5 4 8 8 C 1.53096 * 109.48331 * 100.05295 * 6 5 4 9 9 C 1.53172 * 109.16237 * 177.59097 * 8 6 5 10 10 C 1.53174 * 109.03844 * 303.01800 * 9 8 6 11 11 C 1.53093 * 109.16375 * 56.98496 * 10 9 8 12 12 H 1.08996 * 109.48657 * 182.40855 * 11 10 9 13 13 C 1.50702 * 109.49248 * 62.37770 * 11 10 9 14 14 H 1.07999 * 119.99457 * 0.05024 * 13 11 10 15 15 C 1.37878 * 120.00119 * 180.02562 * 13 11 10 16 16 N 1.31512 * 119.99690 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00038 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47239 * 89.99507 * 17 15 13 19 19 H 1.48494 * 109.46955 * 209.99978 * 17 15 13 20 20 H 1.48502 * 109.47205 * 329.99722 * 17 15 13 21 21 O 1.42905 * 109.41141 * 302.39044 * 11 10 9 22 22 C 1.38231 * 120.00079 * 0.26780 * 5 4 3 23 23 C 1.38231 * 120.00129 * 359.54459 * 22 5 4 24 24 H 1.08995 * 109.47321 * 89.99916 * 1 2 3 25 25 H 1.09000 * 109.47445 * 210.00156 * 1 2 3 26 26 H 1.09000 * 109.47441 * 329.99966 * 1 2 3 27 27 H 1.07994 * 120.00097 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.99240 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.51862 * 297.49616 * 8 6 5 30 30 H 1.08993 * 109.51849 * 57.68662 * 8 6 5 31 31 H 1.09002 * 109.54386 * 183.15042 * 9 8 6 32 32 H 1.09006 * 109.62035 * 62.93555 * 9 8 6 33 33 H 1.09001 * 109.52606 * 297.07957 * 10 9 8 34 34 H 1.09003 * 109.57599 * 176.91695 * 10 9 8 35 35 H 0.97003 * 119.99666 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.00135 * 179.73218 * 22 5 4 37 37 H 1.08000 * 120.00605 * 180.22738 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2716 -0.0002 0.0016 6 6 5.7786 -0.0003 0.0028 7 1 6.1426 0.9654 -0.3484 8 6 6.2881 -0.2516 1.4244 9 6 7.8186 -0.3101 1.4070 10 6 8.2659 -1.4000 0.4281 11 6 7.6801 -1.1044 -0.9551 12 1 7.9598 -1.8996 -1.6460 13 6 8.2176 0.2105 -1.4583 14 1 8.9086 0.7785 -0.8530 15 6 7.8277 0.6882 -2.6915 16 7 6.9871 -0.0040 -3.4289 17 14 8.4946 2.3177 -3.3155 18 1 9.7457 2.0806 -4.0795 19 1 7.4883 2.9582 -4.1999 20 1 8.7800 3.2097 -2.1630 21 8 6.2558 -1.0328 -0.8623 22 6 3.5804 -1.1973 -0.0035 23 6 2.1981 -1.1973 -0.0001 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6582 2.1324 0.0004 28 1 4.1205 2.1323 0.0001 29 1 5.9620 0.5585 2.0767 30 1 5.8916 -1.1982 1.7914 31 1 8.1860 -0.5443 2.4061 32 1 8.2181 0.6527 1.0882 33 1 7.9092 -2.3699 0.7749 34 1 9.3542 -1.4124 0.3676 35 1 6.7130 0.3319 -4.2967 36 1 4.1204 -2.1326 -0.0070 37 1 1.6580 -2.1325 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390481443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:39 Heat of formation + Delta-G solvation = -56.962888 kcal Electronic energy + Delta-G solvation = -18146.053633 eV Core-core repulsion = 15465.610917 eV Total energy + Delta-G solvation = -2680.442716 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70819 -39.33561 -34.94625 -34.14925 -33.84159 -31.74795 -31.31459 -28.25191 -27.00138 -24.51342 -23.74081 -23.52828 -21.54900 -20.69301 -18.35128 -17.47390 -16.71099 -16.50916 -16.10012 -15.73075 -15.39490 -15.18792 -14.79506 -14.58897 -14.29283 -14.18008 -13.62873 -13.35090 -13.02818 -12.93526 -12.81233 -12.69572 -12.48681 -12.37051 -12.03614 -11.81637 -11.77940 -11.47472 -11.25247 -10.72660 -10.46556 -9.76139 -9.73513 -9.21900 -8.09105 -6.30181 0.49221 0.57776 1.37044 1.38042 1.47534 2.39204 2.88201 3.13552 3.54899 3.99086 4.06821 4.13063 4.19289 4.25932 4.27502 4.46541 4.53385 4.60636 4.71325 4.78784 4.90008 4.92297 4.94358 4.99946 5.06328 5.17589 5.25248 5.27996 5.36372 5.38128 5.49081 5.57108 5.66052 5.74447 5.80323 5.91751 6.16957 6.21548 6.76767 7.15976 7.47053 8.95112 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.007772 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.262758 B = 3601.930926 C = 4259.381313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C -0.125 4.125 4 C -0.127 4.127 5 C -0.090 4.090 6 C 0.143 3.857 7 H 0.035 0.965 8 C -0.129 4.129 9 C -0.105 4.105 10 C -0.135 4.135 11 C 0.204 3.796 12 H 0.025 0.975 13 C -0.561 4.561 14 H 0.058 0.942 15 C 0.029 3.971 16 N -0.895 5.895 17 Si 0.944 3.056 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.265 1.265 21 O -0.388 6.388 22 C -0.108 4.108 23 C -0.129 4.129 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.258 0.742 36 H 0.111 0.889 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.595 1.155 9.280 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.145 4.145 5 C -0.090 4.090 6 C 0.084 3.916 7 H 0.053 0.947 8 C -0.166 4.166 9 C -0.142 4.142 10 C -0.173 4.173 11 C 0.148 3.852 12 H 0.042 0.958 13 C -0.599 4.599 14 H 0.076 0.924 15 C -0.174 4.174 16 N -0.533 5.533 17 Si 0.769 3.231 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.189 1.189 21 O -0.308 6.308 22 C -0.126 4.126 23 C -0.147 4.147 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.137 0.863 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.129 0.871 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.808 1.012 9.025 13.367 hybrid contribution 1.000 0.821 -0.812 1.528 sum -8.808 1.833 8.213 12.182 Atomic orbital electron populations 1.20791 0.88651 1.03859 1.02942 1.20284 0.97792 0.92573 0.99291 1.21227 0.93084 0.98865 1.01130 1.21134 0.95295 0.97079 1.00972 1.19969 0.94719 0.94345 0.99964 1.20400 0.89063 0.92205 0.89886 0.94688 1.22042 0.96466 1.01833 0.96291 1.21430 0.95048 0.99039 0.98703 1.22060 1.00261 0.98052 0.96920 1.19639 0.78651 0.95266 0.91637 0.95765 1.21799 1.28211 1.07063 1.02803 0.92374 1.25785 0.94561 1.00127 0.96891 1.70203 1.32598 1.39256 1.11228 0.85790 0.78211 0.80554 0.78542 1.19784 1.21286 1.18888 1.87856 1.23942 1.52664 1.66301 1.21023 0.94791 0.97516 0.99266 1.21278 0.93274 0.98872 1.01252 0.90713 0.90398 0.90232 0.83726 0.86275 0.90752 0.91902 0.90519 0.92770 0.92858 0.91915 0.93351 0.87114 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 10.01 71.23 0.71 -1.23 16 2 C -0.10 -2.72 5.88 -19.87 -0.12 -2.83 16 3 C -0.13 -3.67 9.70 22.27 0.22 -3.45 16 4 C -0.13 -4.54 9.67 22.27 0.22 -4.32 16 5 C -0.09 -3.66 4.97 -19.87 -0.10 -3.76 16 6 C 0.14 6.47 2.58 29.88 0.08 6.54 16 7 H 0.04 1.80 6.95 -2.38 -0.02 1.78 16 8 C -0.13 -4.81 5.40 30.68 0.17 -4.65 16 9 C -0.10 -3.90 5.77 30.71 0.18 -3.72 16 10 C -0.14 -5.65 5.59 30.68 0.17 -5.48 16 11 C 0.20 10.70 3.16 29.88 0.09 10.79 16 12 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 13 C -0.56 -30.91 6.59 25.60 0.17 -30.74 16 14 H 0.06 3.11 6.87 -2.91 -0.02 3.09 16 15 C 0.03 1.62 5.40 84.66 0.46 2.08 16 16 N -0.90 -54.24 12.84 21.45 0.28 -53.96 16 17 Si 0.94 44.09 29.54 68.60 2.03 46.12 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 21 O -0.39 -20.52 8.95 -148.98 -1.33 -21.85 16 22 C -0.11 -4.07 9.36 22.27 0.21 -3.86 16 23 C -0.13 -3.93 9.70 22.27 0.22 -3.72 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 26 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 27 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 28 H 0.12 4.07 8.04 -2.91 -0.02 4.05 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 2.16 6.85 -2.38 -0.02 2.15 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.11 4.34 7.77 -2.91 -0.02 4.32 16 37 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -65.37 300.52 4.66 -60.71 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.03 Total: 17.33 kcal Atomic # 6 Polarization: -51.01 SS G_CDS: 2.67 Total: -48.34 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.28 Total: -53.96 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.33 Total: -21.85 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.37 4.66 -60.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390481443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.745 kcal (2) G-P(sol) polarization free energy of solvation -65.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds