Wall clock time and date at job start Mon Mar 30 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47297 * 2 1 4 4 C 1.50703 * 109.87254 * 59.54820 * 3 2 1 5 5 C 1.38233 * 119.99756 * 90.17715 * 4 3 2 6 6 C 1.38237 * 119.99793 * 179.76911 * 5 4 3 7 7 C 1.38241 * 119.99992 * 0.50310 * 6 5 4 8 8 C 1.38233 * 119.99832 * 359.75076 * 7 6 5 9 9 C 1.38232 * 120.00000 * 270.44779 * 4 3 2 10 10 C 1.54099 * 109.88040 * 180.71378 * 3 2 1 11 11 C 1.54812 * 104.18952 * 117.39308 * 10 3 2 12 12 C 1.54992 * 102.09147 * 339.11921 * 11 10 3 13 13 H 1.09005 * 110.61954 * 278.52638 * 12 11 10 14 14 C 1.50698 * 110.62052 * 155.52675 * 12 11 10 15 15 H 1.08004 * 119.99772 * 4.47414 * 14 12 11 16 16 C 1.37872 * 120.00261 * 184.47752 * 14 12 11 17 17 N 1.31511 * 120.00165 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00025 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47675 * 89.99773 * 18 16 14 20 20 H 1.48509 * 109.47398 * 210.00074 * 18 16 14 21 21 H 1.48500 * 109.47102 * 329.99820 * 18 16 14 22 22 O 1.43745 * 109.87687 * 298.54318 * 3 2 1 23 23 H 1.08999 * 109.47157 * 300.00480 * 1 2 3 24 24 H 1.08998 * 109.46650 * 60.00593 * 1 2 3 25 25 H 1.08998 * 109.46837 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47157 * 239.99519 * 2 1 3 27 27 H 1.09008 * 109.46401 * 119.99898 * 2 1 3 28 28 H 1.07994 * 120.00361 * 359.97438 * 5 4 3 29 29 H 1.08003 * 119.99695 * 180.22509 * 6 5 4 30 30 H 1.08000 * 119.99870 * 179.72265 * 7 6 5 31 31 H 1.07993 * 119.99974 * 179.97438 * 8 7 6 32 32 H 1.08005 * 120.00002 * 0.02562 * 9 4 3 33 33 H 1.09000 * 110.48694 * 236.07043 * 10 3 2 34 34 H 1.09001 * 110.48278 * 358.71255 * 10 3 2 35 35 H 1.08996 * 110.90812 * 97.31955 * 11 10 3 36 36 H 1.08998 * 110.90412 * 220.88773 * 11 10 3 37 37 H 0.97004 * 120.00221 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5337 2.1648 1.2218 5 6 2.2762 2.1552 2.3877 6 6 1.8139 2.8218 3.5070 7 6 0.6042 3.4895 3.4634 8 6 -0.1408 3.4947 2.2990 9 6 0.3240 2.8324 1.1782 10 6 3.5809 1.4534 -0.0181 11 6 3.9399 2.1522 -1.3521 12 6 2.6382 1.9713 -2.1738 13 1 2.6034 0.9794 -2.6244 14 6 2.5247 3.0400 -3.2303 15 1 3.3301 3.7451 -3.3737 16 6 1.3928 3.1175 -4.0137 17 7 0.4123 2.2586 -3.8393 18 14 1.2526 4.4417 -5.3237 19 1 1.8028 3.9309 -6.6049 20 1 -0.1752 4.8060 -5.5085 21 1 2.0185 5.6410 -4.8992 22 8 1.5940 2.1185 -1.1875 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.2189 1.6296 2.4233 29 1 2.3958 2.8173 4.4169 30 1 0.2409 4.0065 4.3393 31 1 -1.0860 4.0159 2.2651 32 1 -0.2584 2.8359 0.2686 33 1 3.9683 2.0225 0.8270 34 1 3.9698 0.4352 -0.0039 35 1 4.1553 3.2086 -1.1921 36 1 4.7794 1.6550 -1.8379 37 1 -0.3842 2.3133 -4.3902 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390507522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:26 Heat of formation + Delta-G solvation = -30.048236 kcal Electronic energy + Delta-G solvation = -18437.814061 eV Core-core repulsion = 15758.538452 eV Total energy + Delta-G solvation = -2679.275609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.68804 -37.60230 -33.50795 -32.01316 -31.35005 -30.19492 -30.11556 -27.55232 -24.81366 -22.50421 -22.32232 -21.79380 -19.86276 -19.01826 -16.92282 -16.19302 -15.36978 -14.92429 -14.39924 -14.32413 -14.07514 -13.65743 -13.32270 -12.97422 -12.64761 -12.27886 -12.05704 -11.90161 -11.60289 -11.22848 -11.07051 -10.88483 -10.64013 -10.53441 -10.48053 -10.15828 -10.11227 -9.83946 -9.60027 -9.05586 -8.60771 -8.49373 -8.25255 -7.97485 -6.00893 -4.12626 1.76277 1.83088 3.30810 3.37813 3.41409 4.20626 4.42800 4.88249 5.18715 5.31123 5.31357 5.40563 5.50187 5.57400 5.65902 5.83085 5.85712 6.00195 6.00810 6.09339 6.28873 6.36442 6.39149 6.47942 6.49853 6.56208 6.67441 6.74761 6.79578 6.82825 6.88723 7.01934 7.08400 7.18561 7.43565 7.54661 7.89756 8.25186 8.59958 8.99255 9.57408 11.06602 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024748 B = 0.007524 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.119308 B = 3720.511556 C = 3924.216597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.131 3.869 4 C -0.054 4.054 5 C -0.123 4.123 6 C -0.130 4.130 7 C -0.133 4.133 8 C -0.128 4.128 9 C -0.086 4.086 10 C -0.150 4.150 11 C -0.147 4.147 12 C 0.211 3.789 13 H 0.025 0.975 14 C -0.529 4.529 15 H 0.063 0.937 16 C 0.079 3.921 17 N -0.861 5.861 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 O -0.334 6.334 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 -1.924 11.428 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.090 3.910 4 C -0.054 4.054 5 C -0.141 4.141 6 C -0.148 4.148 7 C -0.151 4.151 8 C -0.146 4.146 9 C -0.104 4.104 10 C -0.187 4.187 11 C -0.185 4.185 12 C 0.156 3.844 13 H 0.043 0.957 14 C -0.567 4.567 15 H 0.081 0.919 16 C -0.127 4.127 17 N -0.498 5.498 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 O -0.253 6.253 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.160 -1.877 11.334 11.546 hybrid contribution 0.065 0.601 -0.618 0.865 sum 1.225 -1.276 10.716 10.860 Atomic orbital electron populations 1.21729 0.95547 1.00239 1.02898 1.21857 0.97102 0.95984 1.00857 1.20724 0.92045 0.91120 0.87128 1.19958 0.94447 0.96737 0.94296 1.21025 0.99765 1.00432 0.92862 1.20978 0.96645 0.99128 0.98039 1.21016 0.95550 1.00673 0.97892 1.21152 0.99921 1.00168 0.93403 1.21193 0.95801 0.95216 0.98226 1.23127 0.95675 1.00498 0.99427 1.23202 1.00650 0.99891 0.94790 1.20633 0.80689 0.96698 0.86366 0.95717 1.20984 1.03616 1.16473 1.15610 0.91885 1.25042 0.95592 0.95479 0.96605 1.70029 1.06339 1.35015 1.38367 0.86646 0.77345 0.82376 0.81895 1.20578 1.21114 1.19799 1.89278 1.42989 1.73450 1.19601 0.93327 0.90614 0.94191 0.91628 0.92978 0.86269 0.86779 0.86909 0.86603 0.84956 0.91464 0.91889 0.91799 0.92366 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.17 37.16 0.34 -2.33 16 2 C -0.12 -2.20 4.93 -26.73 -0.13 -2.33 16 3 C 0.13 2.61 0.69 -91.20 -0.06 2.55 16 4 C -0.05 -1.00 4.29 -104.62 -0.45 -1.45 16 5 C -0.12 -1.94 8.73 -39.58 -0.35 -2.28 16 6 C -0.13 -1.83 10.05 -39.58 -0.40 -2.22 16 7 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 8 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 9 C -0.09 -1.60 7.55 -39.58 -0.30 -1.90 16 10 C -0.15 -2.73 5.75 -25.20 -0.14 -2.87 16 11 C -0.15 -3.11 6.55 -24.72 -0.16 -3.27 16 12 C 0.21 5.40 3.11 -26.83 -0.08 5.32 16 13 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 14 C -0.53 -14.82 8.83 -34.44 -0.30 -15.12 16 15 H 0.06 1.73 7.78 -52.48 -0.41 1.32 16 16 C 0.08 2.21 5.42 -17.82 -0.10 2.11 16 17 N -0.86 -25.05 12.95 55.43 0.72 -24.33 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 O -0.33 -8.36 8.57 -35.23 -0.30 -8.66 16 23 H 0.05 0.84 6.19 -51.93 -0.32 0.52 16 24 H 0.07 1.62 7.74 -51.93 -0.40 1.22 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 27 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.12 1.67 6.50 -52.49 -0.34 1.33 16 29 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.13 2.73 7.50 -52.48 -0.39 2.33 16 33 H 0.07 1.12 5.83 -51.93 -0.30 0.81 16 34 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 35 H 0.06 1.38 8.05 -51.93 -0.42 0.96 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 297.98 15.07 4.49 4.49 Total: -1.00 -29.57 297.98 -8.55 -38.12 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.50 Total: 2.53 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -2.93 Total: -28.50 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.72 Total: -24.33 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.30 Total: -8.66 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.57 -8.55 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390507522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.070 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds