Wall clock time and date at job start Mon Mar 30 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47297 * 2 1 4 4 C 1.50703 * 109.87254 * 59.54820 * 3 2 1 5 5 C 1.38233 * 119.99756 * 90.17715 * 4 3 2 6 6 C 1.38237 * 119.99793 * 179.76911 * 5 4 3 7 7 C 1.38241 * 119.99992 * 0.50310 * 6 5 4 8 8 C 1.38233 * 119.99832 * 359.75076 * 7 6 5 9 9 C 1.38232 * 120.00000 * 270.44779 * 4 3 2 10 10 C 1.54099 * 109.88040 * 180.71378 * 3 2 1 11 11 C 1.54812 * 104.18952 * 117.39308 * 10 3 2 12 12 C 1.54992 * 102.09147 * 339.11921 * 11 10 3 13 13 H 1.09005 * 110.61954 * 278.52638 * 12 11 10 14 14 C 1.50698 * 110.62052 * 155.52675 * 12 11 10 15 15 H 1.08004 * 119.99772 * 4.47414 * 14 12 11 16 16 C 1.37872 * 120.00261 * 184.47752 * 14 12 11 17 17 N 1.31511 * 120.00165 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00025 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47675 * 89.99773 * 18 16 14 20 20 H 1.48509 * 109.47398 * 210.00074 * 18 16 14 21 21 H 1.48500 * 109.47102 * 329.99820 * 18 16 14 22 22 O 1.43745 * 109.87687 * 298.54318 * 3 2 1 23 23 H 1.08999 * 109.47157 * 300.00480 * 1 2 3 24 24 H 1.08998 * 109.46650 * 60.00593 * 1 2 3 25 25 H 1.08998 * 109.46837 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47157 * 239.99519 * 2 1 3 27 27 H 1.09008 * 109.46401 * 119.99898 * 2 1 3 28 28 H 1.07994 * 120.00361 * 359.97438 * 5 4 3 29 29 H 1.08003 * 119.99695 * 180.22509 * 6 5 4 30 30 H 1.08000 * 119.99870 * 179.72265 * 7 6 5 31 31 H 1.07993 * 119.99974 * 179.97438 * 8 7 6 32 32 H 1.08005 * 120.00002 * 0.02562 * 9 4 3 33 33 H 1.09000 * 110.48694 * 236.07043 * 10 3 2 34 34 H 1.09001 * 110.48278 * 358.71255 * 10 3 2 35 35 H 1.08996 * 110.90812 * 97.31955 * 11 10 3 36 36 H 1.08998 * 110.90412 * 220.88773 * 11 10 3 37 37 H 0.97004 * 120.00221 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5337 2.1648 1.2218 5 6 2.2762 2.1552 2.3877 6 6 1.8139 2.8218 3.5070 7 6 0.6042 3.4895 3.4634 8 6 -0.1408 3.4947 2.2990 9 6 0.3240 2.8324 1.1782 10 6 3.5809 1.4534 -0.0181 11 6 3.9399 2.1522 -1.3521 12 6 2.6382 1.9713 -2.1738 13 1 2.6034 0.9794 -2.6244 14 6 2.5247 3.0400 -3.2303 15 1 3.3301 3.7451 -3.3737 16 6 1.3928 3.1175 -4.0137 17 7 0.4123 2.2586 -3.8393 18 14 1.2526 4.4417 -5.3237 19 1 1.8028 3.9309 -6.6049 20 1 -0.1752 4.8060 -5.5085 21 1 2.0185 5.6410 -4.8992 22 8 1.5940 2.1185 -1.1875 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.2189 1.6296 2.4233 29 1 2.3958 2.8173 4.4169 30 1 0.2409 4.0065 4.3393 31 1 -1.0860 4.0159 2.2651 32 1 -0.2584 2.8359 0.2686 33 1 3.9683 2.0225 0.8270 34 1 3.9698 0.4352 -0.0039 35 1 4.1553 3.2086 -1.1921 36 1 4.7794 1.6550 -1.8379 37 1 -0.3842 2.3133 -4.3902 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390507522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:25 Heat of formation + Delta-G solvation = -45.905988 kcal Electronic energy + Delta-G solvation = -18438.501705 eV Core-core repulsion = 15758.538452 eV Total energy + Delta-G solvation = -2679.963253 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14654 -39.04963 -35.27904 -33.92283 -32.90772 -31.61272 -31.39736 -29.32832 -26.61237 -24.04671 -23.77688 -23.11290 -21.57827 -20.47187 -18.75536 -17.77117 -16.97087 -16.61939 -16.14932 -15.65246 -15.42579 -15.21267 -14.88751 -14.39968 -14.12124 -13.96964 -13.71648 -13.30063 -13.28194 -12.84372 -12.63355 -12.52384 -12.34247 -12.19763 -11.99242 -11.88176 -11.69019 -11.31379 -11.24643 -10.95955 -10.69926 -9.90392 -9.68940 -9.48391 -8.14702 -6.34227 0.55016 0.60741 1.38395 1.39997 1.50327 2.39811 2.97272 3.06348 3.55091 3.80456 3.99425 4.08046 4.19694 4.26743 4.32481 4.36741 4.46667 4.53408 4.61539 4.75875 4.81215 4.86020 4.95289 4.98275 5.06480 5.13599 5.15081 5.25291 5.26659 5.40995 5.46596 5.56829 5.67702 5.73685 5.75944 5.88388 6.19317 6.22549 6.61599 7.02305 7.40323 8.92803 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024748 B = 0.007524 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.119308 B = 3720.511556 C = 3924.216597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C 0.119 3.881 4 C -0.076 4.076 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.127 4.127 8 C -0.134 4.134 9 C -0.116 4.116 10 C -0.139 4.139 11 C -0.141 4.141 12 C 0.204 3.796 13 H -0.008 1.008 14 C -0.554 4.554 15 H 0.062 0.938 16 C 0.026 3.974 17 N -0.896 5.896 18 Si 0.957 3.043 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.268 1.268 22 O -0.365 6.365 23 H 0.054 0.946 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 -1.468 14.088 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.079 3.921 4 C -0.076 4.076 5 C -0.143 4.143 6 C -0.139 4.139 7 C -0.144 4.144 8 C -0.152 4.152 9 C -0.134 4.134 10 C -0.177 4.177 11 C -0.179 4.179 12 C 0.148 3.852 13 H 0.010 0.990 14 C -0.591 4.591 15 H 0.080 0.920 16 C -0.176 4.176 17 N -0.533 5.533 18 Si 0.782 3.218 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.192 1.192 22 O -0.285 6.285 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.159 0.841 29 H 0.171 0.829 30 H 0.167 0.833 31 H 0.148 0.852 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.399 -1.424 13.998 14.274 hybrid contribution -0.343 0.449 -1.351 1.464 sum 2.056 -0.975 12.647 12.850 Atomic orbital electron populations 1.21602 0.95928 1.00913 1.00967 1.21854 0.96785 0.95467 1.01472 1.21022 0.93362 0.91661 0.86103 1.19908 0.95042 0.97913 0.94734 1.21259 1.00173 1.00644 0.92205 1.21445 0.96559 0.97198 0.98673 1.21439 0.95146 0.99815 0.98026 1.21355 1.00859 0.99717 0.93232 1.21009 0.96490 0.97849 0.98047 1.23123 0.94332 1.01868 0.98353 1.23077 0.98864 1.00049 0.95903 1.20465 0.83347 0.94253 0.87087 0.99004 1.21400 1.03773 1.16983 1.16961 0.92003 1.25885 0.95238 0.97677 0.98848 1.70174 1.06816 1.36793 1.39478 0.85590 0.77288 0.79578 0.79351 1.19357 1.20927 1.19228 1.89205 1.43516 1.74451 1.21324 0.92681 0.95085 0.92053 0.93376 0.89634 0.84129 0.82913 0.83350 0.85206 0.88989 0.89151 0.89551 0.92600 0.90736 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.17 71.98 0.66 -4.50 16 2 C -0.12 -4.34 4.93 30.59 0.15 -4.19 16 3 C 0.12 4.77 0.69 -11.17 -0.01 4.76 16 4 C -0.08 -2.74 4.29 -19.87 -0.09 -2.83 16 5 C -0.13 -3.53 8.73 22.27 0.19 -3.33 16 6 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16 7 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 8 C -0.13 -4.03 10.05 22.27 0.22 -3.80 16 9 C -0.12 -4.39 7.55 22.27 0.17 -4.23 16 10 C -0.14 -4.86 5.75 31.58 0.18 -4.68 16 11 C -0.14 -5.95 6.55 31.89 0.21 -5.74 16 12 C 0.20 10.89 3.11 30.53 0.09 10.99 16 13 H -0.01 -0.44 8.13 -2.38 -0.02 -0.46 16 14 C -0.55 -32.19 8.83 25.60 0.23 -31.96 16 15 H 0.06 3.49 7.78 -2.91 -0.02 3.46 16 16 C 0.03 1.51 5.42 84.65 0.46 1.97 16 17 N -0.90 -54.74 12.95 21.44 0.28 -54.46 16 18 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 O -0.37 -19.24 8.57 -148.98 -1.28 -20.52 16 23 H 0.05 1.97 6.19 -2.39 -0.01 1.95 16 24 H 0.03 1.41 7.74 -2.39 -0.02 1.39 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.90 8.13 -2.39 -0.02 1.88 16 27 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 28 H 0.14 3.29 6.50 -2.91 -0.02 3.28 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.09 4.15 7.50 -2.91 -0.02 4.13 16 33 H 0.09 2.72 5.83 -2.39 -0.01 2.71 16 34 H 0.09 2.59 7.70 -2.39 -0.02 2.57 16 35 H 0.06 2.41 8.05 -2.39 -0.02 2.39 16 36 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -68.02 297.98 4.98 -63.03 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.03 Total: 17.85 kcal Atomic # 6 Polarization: -55.92 SS G_CDS: 2.92 Total: -53.00 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.28 Total: -54.46 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.28 Total: -20.52 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.02 4.98 -63.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390507522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.125 kcal (2) G-P(sol) polarization free energy of solvation -68.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds