Wall clock time and date at job start Mon Mar 30 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47424 * 2 1 4 4 C 1.50697 * 109.86638 * 305.44946 * 3 2 1 5 5 C 1.38237 * 120.00190 * 269.27431 * 4 3 2 6 6 C 1.38230 * 120.00300 * 179.79218 * 5 4 3 7 7 C 1.38244 * 119.99796 * 0.46735 * 6 5 4 8 8 C 1.38237 * 119.99987 * 359.76303 * 7 6 5 9 9 C 1.38237 * 119.99880 * 0.02613 * 8 7 6 10 10 C 1.54097 * 109.88015 * 184.28638 * 3 2 1 11 11 C 1.54811 * 104.18723 * 242.60861 * 10 3 2 12 12 C 1.54994 * 102.09418 * 20.88054 * 11 10 3 13 13 H 1.08998 * 110.75263 * 81.54397 * 12 11 10 14 14 C 1.50701 * 110.61786 * 204.48039 * 12 11 10 15 15 H 1.08002 * 119.99761 * 355.51702 * 14 12 11 16 16 C 1.37871 * 119.99694 * 175.80265 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 O 1.43746 * 109.87535 * 66.45314 * 3 2 1 23 23 H 1.09003 * 109.47111 * 300.00011 * 1 2 3 24 24 H 1.09004 * 109.47518 * 59.99650 * 1 2 3 25 25 H 1.08995 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47111 * 239.99989 * 2 1 3 27 27 H 1.08994 * 109.47427 * 120.00212 * 2 1 3 28 28 H 1.08005 * 119.99514 * 0.02562 * 5 4 3 29 29 H 1.07995 * 120.00164 * 180.25328 * 6 5 4 30 30 H 1.07999 * 120.00032 * 179.79425 * 7 6 5 31 31 H 1.07994 * 119.99760 * 180.02562 * 8 7 6 32 32 H 1.07992 * 119.99975 * 179.97438 * 9 8 7 33 33 H 1.09009 * 110.48721 * 1.28391 * 10 3 2 34 34 H 1.08999 * 110.48687 * 123.92590 * 10 3 2 35 35 H 1.09001 * 110.90205 * 262.68344 * 11 10 3 36 36 H 1.08998 * 110.90854 * 139.08123 * 11 10 3 37 37 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4358 2.1994 -1.1546 5 6 2.0855 2.2339 -2.3742 6 6 1.5292 2.9246 -3.4345 7 6 0.3277 3.5889 -3.2724 8 6 -0.3197 3.5583 -2.0514 9 6 0.2345 2.8640 -0.9924 10 6 3.5771 1.4548 -0.1083 11 6 4.0452 2.1149 1.2115 12 6 2.8153 1.9087 2.1318 13 1 2.8149 0.9051 2.5569 14 6 2.7903 2.9462 3.2245 15 1 3.6056 3.6478 3.3217 16 6 1.7294 2.9959 4.1037 17 7 0.7366 2.1415 3.9853 18 14 1.7022 4.2769 5.4630 19 1 1.7355 5.6353 4.8639 20 1 0.4625 4.1206 6.2656 21 1 2.8865 4.0934 6.3400 22 8 1.6938 2.0833 1.2393 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.0261 1.7180 -2.4997 29 1 2.0348 2.9481 -4.3885 30 1 -0.1054 4.1312 -4.0999 31 1 -1.2585 4.0769 -1.9250 32 1 -0.2710 2.8405 -0.0384 33 1 3.9624 0.4379 -0.1839 34 1 3.8944 2.0486 -0.9655 35 1 4.2480 3.1758 1.0651 36 1 4.9209 1.6046 1.6124 37 1 -0.0095 2.1763 4.6041 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390507523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:27 Heat of formation + Delta-G solvation = -29.614448 kcal Electronic energy + Delta-G solvation = -18435.333545 eV Core-core repulsion = 15756.076746 eV Total energy + Delta-G solvation = -2679.256798 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.69818 -37.59705 -33.52844 -32.02831 -31.34742 -30.19533 -30.09310 -27.56482 -24.80954 -22.50811 -22.33502 -21.79944 -19.86441 -19.01312 -16.91281 -16.18725 -15.36701 -14.93583 -14.41418 -14.31974 -14.07489 -13.67063 -13.34739 -12.98449 -12.61466 -12.27739 -12.05361 -11.92379 -11.61469 -11.24404 -11.07036 -10.86275 -10.65290 -10.53791 -10.47211 -10.17574 -10.12283 -9.84549 -9.59930 -9.05908 -8.59987 -8.49358 -8.24657 -7.97868 -6.00607 -4.12626 1.76412 1.83165 3.32765 3.37227 3.39943 4.20710 4.42864 4.87985 5.18754 5.31184 5.31506 5.40283 5.50222 5.56992 5.65749 5.82501 5.85434 5.99619 5.99860 6.08779 6.28692 6.35965 6.38851 6.47736 6.48976 6.55942 6.67086 6.74284 6.79597 6.82493 6.89025 6.99299 7.06111 7.18333 7.43633 7.54602 7.89699 8.25214 8.59913 8.99143 9.57380 11.06839 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024836 B = 0.007505 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.142786 B = 3729.981226 C = 3934.085189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.131 3.869 4 C -0.054 4.054 5 C -0.123 4.123 6 C -0.130 4.130 7 C -0.133 4.133 8 C -0.129 4.129 9 C -0.086 4.086 10 C -0.150 4.150 11 C -0.147 4.147 12 C 0.211 3.789 13 H 0.026 0.974 14 C -0.530 4.530 15 H 0.063 0.937 16 C 0.079 3.921 17 N -0.862 5.862 18 Si 0.890 3.110 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 O -0.335 6.335 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 -1.595 -11.614 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.090 3.910 4 C -0.054 4.054 5 C -0.141 4.141 6 C -0.148 4.148 7 C -0.151 4.151 8 C -0.147 4.147 9 C -0.104 4.104 10 C -0.188 4.188 11 C -0.185 4.185 12 C 0.156 3.844 13 H 0.043 0.957 14 C -0.568 4.568 15 H 0.081 0.919 16 C -0.127 4.127 17 N -0.498 5.498 18 Si 0.717 3.283 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 O -0.254 6.254 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.224 -1.555 -11.483 11.590 hybrid contribution 0.121 0.592 0.634 0.876 sum 0.344 -0.963 -10.849 10.897 Atomic orbital electron populations 1.21743 0.95671 1.00291 1.02672 1.21862 0.96962 0.96040 1.00978 1.20731 0.92178 0.91141 0.86969 1.19952 0.94660 0.96683 0.94101 1.21031 0.99843 1.00352 0.92874 1.20975 0.96366 0.99065 0.98391 1.21017 0.96098 1.00642 0.97371 1.21151 1.00066 1.00061 0.93388 1.21192 0.95211 0.95097 0.98894 1.23133 0.95567 1.00576 0.99476 1.23198 1.00331 1.00073 0.94911 1.20634 0.79843 0.96605 0.87308 0.95681 1.20949 1.06617 1.18010 1.11193 0.91929 1.25042 0.95296 0.95335 0.97032 1.70019 1.08474 1.35039 1.36245 0.86709 0.77367 0.82300 0.81881 1.20119 1.21193 1.20142 1.89281 1.41558 1.74870 1.19667 0.90934 0.93271 0.94119 0.92950 0.91468 0.86255 0.86783 0.86913 0.86604 0.84972 0.91882 0.91438 0.91793 0.92359 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.04 37.15 0.34 -2.30 16 2 C -0.12 -2.21 4.97 -26.73 -0.13 -2.34 16 3 C 0.13 2.61 0.70 -91.20 -0.06 2.55 16 4 C -0.05 -0.99 4.14 -104.62 -0.43 -1.42 16 5 C -0.12 -1.94 8.74 -39.58 -0.35 -2.29 16 6 C -0.13 -1.83 10.05 -39.58 -0.40 -2.22 16 7 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 8 C -0.13 -2.02 10.05 -39.58 -0.40 -2.41 16 9 C -0.09 -1.60 7.51 -39.58 -0.30 -1.89 16 10 C -0.15 -2.73 5.76 -25.20 -0.15 -2.88 16 11 C -0.15 -3.11 6.55 -24.72 -0.16 -3.27 16 12 C 0.21 5.41 3.08 -26.83 -0.08 5.32 16 13 H 0.03 0.69 8.05 -51.93 -0.42 0.28 16 14 C -0.53 -14.86 8.83 -34.44 -0.30 -15.17 16 15 H 0.06 1.71 7.78 -52.49 -0.41 1.30 16 16 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 17 N -0.86 -25.12 12.95 55.43 0.72 -24.40 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 O -0.33 -8.40 8.79 -35.23 -0.31 -8.71 16 23 H 0.07 1.51 7.89 -51.93 -0.41 1.10 16 24 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.31 8.01 -51.93 -0.42 0.89 16 28 H 0.12 1.67 6.46 -52.48 -0.34 1.34 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.13 2.73 7.51 -52.49 -0.39 2.33 16 33 H 0.06 1.03 7.70 -51.92 -0.40 0.63 16 34 H 0.07 1.12 5.79 -51.93 -0.30 0.82 16 35 H 0.06 1.38 8.05 -51.93 -0.42 0.96 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 297.77 15.07 4.49 4.49 Total: -1.00 -29.64 297.77 -8.54 -38.18 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.49 Total: 2.56 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: -2.92 Total: -28.47 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.72 Total: -24.40 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.31 Total: -8.71 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.64 -8.54 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390507523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.561 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds