Wall clock time and date at job start Mon Mar 30 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47424 * 2 1 4 4 C 1.50697 * 109.86638 * 305.44946 * 3 2 1 5 5 C 1.38237 * 120.00190 * 269.27431 * 4 3 2 6 6 C 1.38230 * 120.00300 * 179.79218 * 5 4 3 7 7 C 1.38244 * 119.99796 * 0.46735 * 6 5 4 8 8 C 1.38237 * 119.99987 * 359.76303 * 7 6 5 9 9 C 1.38237 * 119.99880 * 0.02613 * 8 7 6 10 10 C 1.54097 * 109.88015 * 184.28638 * 3 2 1 11 11 C 1.54811 * 104.18723 * 242.60861 * 10 3 2 12 12 C 1.54994 * 102.09418 * 20.88054 * 11 10 3 13 13 H 1.08998 * 110.75263 * 81.54397 * 12 11 10 14 14 C 1.50701 * 110.61786 * 204.48039 * 12 11 10 15 15 H 1.08002 * 119.99761 * 355.51702 * 14 12 11 16 16 C 1.37871 * 119.99694 * 175.80265 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 O 1.43746 * 109.87535 * 66.45314 * 3 2 1 23 23 H 1.09003 * 109.47111 * 300.00011 * 1 2 3 24 24 H 1.09004 * 109.47518 * 59.99650 * 1 2 3 25 25 H 1.08995 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47111 * 239.99989 * 2 1 3 27 27 H 1.08994 * 109.47427 * 120.00212 * 2 1 3 28 28 H 1.08005 * 119.99514 * 0.02562 * 5 4 3 29 29 H 1.07995 * 120.00164 * 180.25328 * 6 5 4 30 30 H 1.07999 * 120.00032 * 179.79425 * 7 6 5 31 31 H 1.07994 * 119.99760 * 180.02562 * 8 7 6 32 32 H 1.07992 * 119.99975 * 179.97438 * 9 8 7 33 33 H 1.09009 * 110.48721 * 1.28391 * 10 3 2 34 34 H 1.08999 * 110.48687 * 123.92590 * 10 3 2 35 35 H 1.09001 * 110.90205 * 262.68344 * 11 10 3 36 36 H 1.08998 * 110.90854 * 139.08123 * 11 10 3 37 37 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4358 2.1994 -1.1546 5 6 2.0855 2.2339 -2.3742 6 6 1.5292 2.9246 -3.4345 7 6 0.3277 3.5889 -3.2724 8 6 -0.3197 3.5583 -2.0514 9 6 0.2345 2.8640 -0.9924 10 6 3.5771 1.4548 -0.1083 11 6 4.0452 2.1149 1.2115 12 6 2.8153 1.9087 2.1318 13 1 2.8149 0.9051 2.5569 14 6 2.7903 2.9462 3.2245 15 1 3.6056 3.6478 3.3217 16 6 1.7294 2.9959 4.1037 17 7 0.7366 2.1415 3.9853 18 14 1.7022 4.2769 5.4630 19 1 1.7355 5.6353 4.8639 20 1 0.4625 4.1206 6.2656 21 1 2.8865 4.0934 6.3400 22 8 1.6938 2.0833 1.2393 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.0261 1.7180 -2.4997 29 1 2.0348 2.9481 -4.3885 30 1 -0.1054 4.1312 -4.0999 31 1 -1.2585 4.0769 -1.9250 32 1 -0.2710 2.8405 -0.0384 33 1 3.9624 0.4379 -0.1839 34 1 3.8944 2.0486 -0.9655 35 1 4.2480 3.1758 1.0651 36 1 4.9209 1.6046 1.6124 37 1 -0.0095 2.1763 4.6041 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390507523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:27 Heat of formation + Delta-G solvation = -45.592113 kcal Electronic energy + Delta-G solvation = -18436.026388 eV Core-core repulsion = 15756.076746 eV Total energy + Delta-G solvation = -2679.949642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15627 -39.04781 -35.29183 -33.94321 -32.90545 -31.61080 -31.37642 -29.34037 -26.60943 -24.04635 -23.78563 -23.12356 -21.57995 -20.46561 -18.75218 -17.75894 -16.96937 -16.62590 -16.17499 -15.64976 -15.42843 -15.21500 -14.90607 -14.39153 -14.10556 -13.96633 -13.73639 -13.33045 -13.26521 -12.82713 -12.64202 -12.51634 -12.36486 -12.19729 -11.98995 -11.85986 -11.71561 -11.31715 -11.24442 -10.96311 -10.69693 -9.90556 -9.68894 -9.48256 -8.14740 -6.34555 0.55085 0.60814 1.38526 1.41479 1.48708 2.39800 2.97293 3.06139 3.54951 3.80359 3.99026 4.07906 4.19581 4.26846 4.32028 4.36648 4.46235 4.52538 4.61419 4.75745 4.81538 4.85867 4.95270 4.98286 5.06714 5.13276 5.15096 5.24265 5.26493 5.41475 5.44524 5.56248 5.67754 5.73574 5.75618 5.88379 6.19024 6.22561 6.61309 7.02054 7.40033 8.92639 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024836 B = 0.007505 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.142786 B = 3729.981226 C = 3934.085189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.119 3.881 4 C -0.075 4.075 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.126 4.126 8 C -0.134 4.134 9 C -0.115 4.115 10 C -0.140 4.140 11 C -0.141 4.141 12 C 0.204 3.796 13 H -0.008 1.008 14 C -0.555 4.555 15 H 0.062 0.938 16 C 0.026 3.974 17 N -0.896 5.896 18 Si 0.957 3.043 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.263 1.263 22 O -0.367 6.367 23 H 0.029 0.971 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 -1.043 -14.354 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.078 3.922 4 C -0.075 4.075 5 C -0.143 4.143 6 C -0.139 4.139 7 C -0.144 4.144 8 C -0.152 4.152 9 C -0.133 4.133 10 C -0.177 4.177 11 C -0.179 4.179 12 C 0.148 3.852 13 H 0.010 0.990 14 C -0.592 4.592 15 H 0.080 0.920 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.782 3.218 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.188 1.188 22 O -0.286 6.286 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.159 0.841 29 H 0.171 0.829 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.273 -1.006 -14.229 14.321 hybrid contribution -0.234 0.412 1.392 1.470 sum 1.039 -0.593 -12.837 12.893 Atomic orbital electron populations 1.21621 0.95844 1.00995 1.00900 1.21858 0.96838 0.95486 1.01459 1.21032 0.93689 0.91786 0.85653 1.19896 0.95101 0.97796 0.94734 1.21266 1.00443 1.00573 0.92018 1.21441 0.96013 0.97130 0.99282 1.21440 0.95853 0.99861 0.97265 1.21353 1.00789 0.99570 0.93467 1.21005 0.96213 0.97733 0.98394 1.23130 0.94044 1.02052 0.98476 1.23073 0.98955 1.00185 0.95652 1.20470 0.82345 0.94165 0.88186 0.98992 1.21383 1.06763 1.18470 1.12618 0.91957 1.25892 0.94895 0.97374 0.99503 1.70167 1.09069 1.36835 1.37259 0.85648 0.77795 0.79431 0.78949 1.19824 1.20752 1.18807 1.89206 1.41838 1.75792 1.21792 0.95217 0.92499 0.92015 0.89556 0.93537 0.84113 0.82912 0.83352 0.85214 0.89036 0.89536 0.89101 0.92566 0.90725 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 9.04 71.98 0.65 -4.41 16 2 C -0.12 -4.37 4.97 30.59 0.15 -4.22 16 3 C 0.12 4.77 0.70 -11.17 -0.01 4.76 16 4 C -0.08 -2.72 4.14 -19.87 -0.08 -2.80 16 5 C -0.13 -3.53 8.74 22.27 0.19 -3.34 16 6 C -0.12 -2.83 10.05 22.27 0.22 -2.61 16 7 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 8 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 9 C -0.12 -4.38 7.51 22.27 0.17 -4.21 16 10 C -0.14 -4.87 5.76 31.58 0.18 -4.69 16 11 C -0.14 -5.94 6.55 31.89 0.21 -5.73 16 12 C 0.20 10.90 3.08 30.53 0.09 11.00 16 13 H -0.01 -0.44 8.05 -2.39 -0.02 -0.46 16 14 C -0.56 -32.30 8.83 25.60 0.23 -32.07 16 15 H 0.06 3.50 7.78 -2.91 -0.02 3.48 16 16 C 0.03 1.50 5.42 84.65 0.46 1.96 16 17 N -0.90 -54.93 12.95 21.45 0.28 -54.65 16 18 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 22 O -0.37 -19.38 8.79 -148.98 -1.31 -20.69 16 23 H 0.03 1.32 7.89 -2.39 -0.02 1.30 16 24 H 0.06 1.99 6.16 -2.38 -0.01 1.98 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.05 1.87 8.01 -2.39 -0.02 1.85 16 28 H 0.14 3.30 6.46 -2.91 -0.02 3.28 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.09 4.14 7.51 -2.91 -0.02 4.11 16 33 H 0.09 2.59 7.70 -2.38 -0.02 2.57 16 34 H 0.09 2.73 5.79 -2.39 -0.01 2.72 16 35 H 0.06 2.42 8.05 -2.39 -0.02 2.40 16 36 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -68.22 297.77 4.95 -63.28 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.04 Total: 17.96 kcal Atomic # 6 Polarization: -55.91 SS G_CDS: 2.92 Total: -53.00 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.28 Total: -54.65 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.31 Total: -20.69 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.22 4.95 -63.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390507523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.686 kcal (2) G-P(sol) polarization free energy of solvation -68.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds