Wall clock time and date at job start Mon Mar 30 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.82535 * 2 1 4 4 C 1.50706 * 109.47116 * 305.88732 * 3 2 1 5 5 C 1.38233 * 120.00109 * 269.72529 * 4 3 2 6 6 C 1.38238 * 119.99749 * 179.78525 * 5 4 3 7 7 C 1.38234 * 120.00056 * 0.46903 * 6 5 4 8 8 C 1.38237 * 120.00048 * 359.76546 * 7 6 5 9 9 C 1.38235 * 120.00123 * 0.02562 * 8 7 6 10 10 C 1.54376 * 109.83209 * 120.89099 * 2 1 3 11 11 C 1.55307 * 102.25549 * 98.24616 * 10 2 1 12 12 C 1.54950 * 100.94240 * 34.12888 * 11 10 2 13 13 H 1.09007 * 110.30356 * 82.47253 * 12 11 10 14 14 C 1.50692 * 110.31069 * 204.54237 * 12 11 10 15 15 H 1.08003 * 119.99874 * 0.02562 * 14 12 11 16 16 C 1.37872 * 119.99979 * 180.02562 * 14 12 11 17 17 N 1.31514 * 120.00146 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99923 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47320 * 89.99944 * 18 16 14 20 20 H 1.48506 * 109.46994 * 210.00113 * 18 16 14 21 21 H 1.48501 * 109.46830 * 329.99552 * 18 16 14 22 22 O 1.43248 * 109.90052 * 239.06885 * 2 1 3 23 23 H 1.09003 * 109.47713 * 59.29465 * 1 2 3 24 24 H 1.08993 * 109.47390 * 179.29700 * 1 2 3 25 25 H 1.09006 * 109.46718 * 299.29958 * 1 2 3 26 26 H 1.09000 * 109.46884 * 185.89464 * 3 2 1 27 27 H 1.09000 * 109.46955 * 65.88780 * 3 2 1 28 28 H 1.08004 * 119.99934 * 0.02562 * 5 4 3 29 29 H 1.07999 * 119.99919 * 180.25459 * 6 5 4 30 30 H 1.08001 * 120.00294 * 179.78846 * 7 6 5 31 31 H 1.08000 * 120.00539 * 180.02562 * 8 7 6 32 32 H 1.07999 * 120.00181 * 179.97438 * 9 8 7 33 33 H 1.08999 * 110.84703 * 216.43694 * 10 2 1 34 34 H 1.08997 * 110.84762 * 340.05301 * 10 2 1 35 35 H 1.08994 * 111.13025 * 152.05246 * 11 10 2 36 36 H 1.09006 * 111.12242 * 276.21604 * 11 10 2 37 37 H 0.97005 * 119.99775 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 6 1.4357 2.1944 -1.1512 5 6 2.0698 2.2165 -2.3793 6 6 1.5050 2.9054 -3.4364 7 6 0.3112 3.5802 -3.2626 8 6 -0.3204 3.5622 -2.0331 9 6 0.2421 2.8697 -0.9772 10 6 2.0537 -0.7456 1.2462 11 6 2.3703 -2.1558 0.6778 12 6 2.8435 -1.7967 -0.7533 13 1 3.8924 -1.5002 -0.7416 14 6 2.6421 -2.9678 -1.6801 15 1 2.2188 -3.8874 -1.3040 16 6 2.9983 -2.8651 -3.0080 17 7 3.5143 -1.7454 -3.4658 18 14 2.7480 -4.3166 -4.1570 19 1 1.3978 -4.2358 -4.7699 20 1 3.7792 -4.2859 -5.2252 21 1 2.8683 -5.5821 -3.3893 22 8 2.0176 -0.6923 -1.1554 23 1 -0.3634 0.5247 -0.8836 24 1 -0.3634 -1.0275 -0.0126 25 1 -0.3633 0.5030 0.8963 26 1 3.1338 1.4344 -0.1055 27 1 1.7772 1.9235 0.9380 28 1 3.0044 1.6922 -2.5140 29 1 1.9983 2.9192 -4.3970 30 1 -0.1283 4.1213 -4.0876 31 1 -1.2533 4.0891 -1.8974 32 1 -0.2512 2.8559 -0.0165 33 1 2.9562 -0.2710 1.6314 34 1 1.2846 -0.8015 2.0165 35 1 3.1660 -2.6385 1.2451 36 1 1.4760 -2.7785 0.6512 37 1 3.7645 -1.6732 -4.4003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390511693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:22 Heat of formation + Delta-G solvation = -34.426185 kcal Electronic energy + Delta-G solvation = -18267.824349 eV Core-core repulsion = 15588.358897 eV Total energy + Delta-G solvation = -2679.465451 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31751 -37.97831 -33.57201 -32.10396 -30.96751 -30.40022 -29.61406 -26.59271 -26.12516 -23.17256 -22.02592 -21.03143 -20.20042 -18.89100 -16.48625 -16.20856 -15.35492 -14.87203 -14.74762 -14.49866 -14.07632 -13.29866 -12.96107 -12.87899 -12.59039 -12.40446 -11.98287 -11.74602 -11.63110 -11.44478 -11.11156 -10.89856 -10.77910 -10.56159 -10.43969 -10.31691 -10.13924 -9.80100 -9.65134 -9.02502 -8.55272 -8.39516 -8.21847 -7.75157 -5.97683 -4.09336 1.84990 1.92463 3.32778 3.39285 3.41499 4.28573 4.45056 4.91078 5.27203 5.30989 5.41520 5.49971 5.51197 5.53223 5.65783 5.79490 5.87881 5.98417 6.04866 6.12636 6.19113 6.20265 6.40819 6.44991 6.51614 6.60326 6.66638 6.70598 6.81890 6.85251 6.90280 7.00430 7.04985 7.25563 7.53131 7.63115 7.92397 8.31631 8.71824 9.09090 9.61103 11.09709 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.008323 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.870802 B = 3363.424214 C = 4273.365996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.104 3.896 3 C -0.084 4.084 4 C -0.060 4.060 5 C -0.085 4.085 6 C -0.121 4.121 7 C -0.135 4.135 8 C -0.132 4.132 9 C -0.123 4.123 10 C -0.147 4.147 11 C -0.147 4.147 12 C 0.210 3.790 13 H 0.027 0.973 14 C -0.532 4.532 15 H 0.060 0.940 16 C 0.079 3.921 17 N -0.862 5.862 18 Si 0.888 3.112 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 O -0.343 6.343 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.130 0.870 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 8.642 5.496 11.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.063 3.937 3 C -0.121 4.121 4 C -0.060 4.060 5 C -0.103 4.103 6 C -0.139 4.139 7 C -0.153 4.153 8 C -0.150 4.150 9 C -0.141 4.141 10 C -0.185 4.185 11 C -0.185 4.185 12 C 0.155 3.845 13 H 0.044 0.956 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.126 4.126 17 N -0.498 5.498 18 Si 0.715 3.285 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 O -0.262 6.262 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.148 0.852 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.361 8.788 5.130 11.071 hybrid contribution -0.195 -0.845 -0.545 1.024 sum -4.557 7.943 4.585 10.241 Atomic orbital electron populations 1.22098 0.95878 1.01727 1.00789 1.21775 0.93238 0.90628 0.88107 1.21030 1.00557 0.95343 0.95188 1.19773 0.94685 0.95903 0.95608 1.21203 1.00731 0.96320 0.92045 1.21124 0.96062 0.97912 0.98802 1.21000 0.96255 1.00920 0.97094 1.20954 0.99745 1.00707 0.93593 1.20959 0.95918 0.98532 0.98705 1.23149 1.00339 0.97555 0.97478 1.23311 1.00792 0.95029 0.99339 1.20499 0.90493 0.85002 0.88517 0.95573 1.21094 1.43846 0.97366 0.94624 0.92176 1.25033 0.93917 0.95458 0.98217 1.70018 1.40135 1.24921 1.14723 0.86681 0.77987 0.83063 0.80725 1.20567 1.21174 1.19839 1.88874 1.67311 1.44178 1.25844 0.92067 0.92666 0.93482 0.90915 0.91606 0.85245 0.86634 0.87033 0.86995 0.86862 0.91804 0.91887 0.92190 0.91786 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 7.98 37.16 0.30 -2.37 16 2 C 0.10 2.03 0.94 -89.90 -0.08 1.94 16 3 C -0.08 -1.45 4.55 -27.88 -0.13 -1.58 16 4 C -0.06 -1.06 4.25 -104.62 -0.44 -1.51 16 5 C -0.09 -1.62 9.49 -39.58 -0.38 -2.00 16 6 C -0.12 -2.06 10.05 -39.58 -0.40 -2.45 16 7 C -0.13 -2.04 10.05 -39.58 -0.40 -2.43 16 8 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 9 C -0.12 -1.92 7.86 -39.58 -0.31 -2.23 16 10 C -0.15 -2.62 6.09 -24.79 -0.15 -2.77 16 11 C -0.15 -3.05 6.53 -24.48 -0.16 -3.21 16 12 C 0.21 5.39 3.22 -26.86 -0.09 5.30 16 13 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 14 C -0.53 -14.97 8.80 -34.45 -0.30 -15.27 16 15 H 0.06 1.66 7.76 -52.48 -0.41 1.25 16 16 C 0.08 2.26 5.43 -17.82 -0.10 2.16 16 17 N -0.86 -25.31 13.05 55.43 0.72 -24.59 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 O -0.34 -8.64 9.67 -35.23 -0.34 -8.98 16 23 H 0.06 1.16 6.13 -51.93 -0.32 0.84 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 27 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 28 H 0.13 2.71 8.06 -52.48 -0.42 2.29 16 29 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.53 8.05 -52.49 -0.42 1.11 16 33 H 0.06 1.05 7.85 -51.93 -0.41 0.64 16 34 H 0.06 0.97 7.82 -51.93 -0.41 0.57 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 303.77 15.07 4.58 4.58 Total: -1.00 -30.18 303.77 -8.83 -39.02 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.74 Total: 2.16 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -3.04 Total: -28.74 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.72 Total: -24.59 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.34 Total: -8.98 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.18 -8.83 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390511693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.589 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds