Wall clock time and date at job start Mon Mar 30 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.82535 * 2 1 4 4 C 1.50706 * 109.47116 * 305.88732 * 3 2 1 5 5 C 1.38233 * 120.00109 * 269.72529 * 4 3 2 6 6 C 1.38238 * 119.99749 * 179.78525 * 5 4 3 7 7 C 1.38234 * 120.00056 * 0.46903 * 6 5 4 8 8 C 1.38237 * 120.00048 * 359.76546 * 7 6 5 9 9 C 1.38235 * 120.00123 * 0.02562 * 8 7 6 10 10 C 1.54376 * 109.83209 * 120.89099 * 2 1 3 11 11 C 1.55307 * 102.25549 * 98.24616 * 10 2 1 12 12 C 1.54950 * 100.94240 * 34.12888 * 11 10 2 13 13 H 1.09007 * 110.30356 * 82.47253 * 12 11 10 14 14 C 1.50692 * 110.31069 * 204.54237 * 12 11 10 15 15 H 1.08003 * 119.99874 * 0.02562 * 14 12 11 16 16 C 1.37872 * 119.99979 * 180.02562 * 14 12 11 17 17 N 1.31514 * 120.00146 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99923 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47320 * 89.99944 * 18 16 14 20 20 H 1.48506 * 109.46994 * 210.00113 * 18 16 14 21 21 H 1.48501 * 109.46830 * 329.99552 * 18 16 14 22 22 O 1.43248 * 109.90052 * 239.06885 * 2 1 3 23 23 H 1.09003 * 109.47713 * 59.29465 * 1 2 3 24 24 H 1.08993 * 109.47390 * 179.29700 * 1 2 3 25 25 H 1.09006 * 109.46718 * 299.29958 * 1 2 3 26 26 H 1.09000 * 109.46884 * 185.89464 * 3 2 1 27 27 H 1.09000 * 109.46955 * 65.88780 * 3 2 1 28 28 H 1.08004 * 119.99934 * 0.02562 * 5 4 3 29 29 H 1.07999 * 119.99919 * 180.25459 * 6 5 4 30 30 H 1.08001 * 120.00294 * 179.78846 * 7 6 5 31 31 H 1.08000 * 120.00539 * 180.02562 * 8 7 6 32 32 H 1.07999 * 120.00181 * 179.97438 * 9 8 7 33 33 H 1.08999 * 110.84703 * 216.43694 * 10 2 1 34 34 H 1.08997 * 110.84762 * 340.05301 * 10 2 1 35 35 H 1.08994 * 111.13025 * 152.05246 * 11 10 2 36 36 H 1.09006 * 111.12242 * 276.21604 * 11 10 2 37 37 H 0.97005 * 119.99775 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 6 1.4357 2.1944 -1.1512 5 6 2.0698 2.2165 -2.3793 6 6 1.5050 2.9054 -3.4364 7 6 0.3112 3.5802 -3.2626 8 6 -0.3204 3.5622 -2.0331 9 6 0.2421 2.8697 -0.9772 10 6 2.0537 -0.7456 1.2462 11 6 2.3703 -2.1558 0.6778 12 6 2.8435 -1.7967 -0.7533 13 1 3.8924 -1.5002 -0.7416 14 6 2.6421 -2.9678 -1.6801 15 1 2.2188 -3.8874 -1.3040 16 6 2.9983 -2.8651 -3.0080 17 7 3.5143 -1.7454 -3.4658 18 14 2.7480 -4.3166 -4.1570 19 1 1.3978 -4.2358 -4.7699 20 1 3.7792 -4.2859 -5.2252 21 1 2.8683 -5.5821 -3.3893 22 8 2.0176 -0.6923 -1.1554 23 1 -0.3634 0.5247 -0.8836 24 1 -0.3634 -1.0275 -0.0126 25 1 -0.3633 0.5030 0.8963 26 1 3.1338 1.4344 -0.1055 27 1 1.7772 1.9235 0.9380 28 1 3.0044 1.6922 -2.5140 29 1 1.9983 2.9192 -4.3970 30 1 -0.1283 4.1213 -4.0876 31 1 -1.2533 4.0891 -1.8974 32 1 -0.2512 2.8559 -0.0165 33 1 2.9562 -0.2710 1.6314 34 1 1.2846 -0.8015 2.0165 35 1 3.1660 -2.6385 1.2451 36 1 1.4760 -2.7785 0.6512 37 1 3.7645 -1.6732 -4.4003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390511693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:21 Heat of formation + Delta-G solvation = -50.815568 kcal Electronic energy + Delta-G solvation = -18268.535046 eV Core-core repulsion = 15588.358897 eV Total energy + Delta-G solvation = -2680.176148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78003 -39.45691 -35.31474 -33.96722 -32.62510 -31.67945 -31.16062 -28.31457 -27.65588 -24.92827 -23.29989 -22.54658 -21.83640 -20.41798 -18.58913 -17.46453 -17.02315 -16.65848 -16.19714 -15.99016 -15.58306 -15.00154 -14.39018 -14.22752 -14.19167 -13.97785 -13.60395 -13.39537 -13.03474 -12.93684 -12.80483 -12.56400 -12.37232 -12.16860 -12.03781 -12.01977 -11.71589 -11.38207 -11.17355 -10.90892 -10.68590 -9.86988 -9.66785 -9.31395 -8.12825 -6.32376 0.58804 0.64068 1.37733 1.39320 1.49263 2.40134 2.99969 3.06493 3.57510 3.90944 4.03771 4.13268 4.17139 4.25258 4.30432 4.37835 4.49174 4.54994 4.72344 4.74106 4.75693 4.90746 4.93432 4.98740 4.99554 5.15290 5.19541 5.22158 5.30990 5.39620 5.55411 5.62497 5.67315 5.74145 5.78540 5.93874 6.22854 6.26967 6.66974 7.17651 7.43451 8.94271 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.008323 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.870802 B = 3363.424214 C = 4273.365996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.087 3.913 3 C -0.078 4.078 4 C -0.076 4.076 5 C -0.120 4.120 6 C -0.138 4.138 7 C -0.134 4.134 8 C -0.127 4.127 9 C -0.121 4.121 10 C -0.135 4.135 11 C -0.140 4.140 12 C 0.203 3.797 13 H -0.013 1.013 14 C -0.554 4.554 15 H 0.060 0.940 16 C 0.025 3.975 17 N -0.897 5.897 18 Si 0.955 3.045 19 H -0.279 1.279 20 H -0.281 1.281 21 H -0.261 1.261 22 O -0.377 6.377 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.089 0.911 26 H 0.050 0.950 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 9.415 6.946 13.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.047 3.953 3 C -0.116 4.116 4 C -0.076 4.076 5 C -0.138 4.138 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.144 4.144 9 C -0.139 4.139 10 C -0.173 4.173 11 C -0.178 4.178 12 C 0.148 3.852 13 H 0.005 0.995 14 C -0.591 4.591 15 H 0.078 0.922 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.779 3.221 19 H -0.205 1.205 20 H -0.206 1.206 21 H -0.185 1.185 22 O -0.297 6.297 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.160 0.840 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.790 9.556 6.596 13.451 hybrid contribution 0.543 -1.012 -0.984 1.513 sum -6.247 8.544 5.612 11.980 Atomic orbital electron populations 1.22043 0.94282 1.01220 1.02173 1.22180 0.94493 0.91421 0.87194 1.20986 0.99219 0.94401 0.96954 1.19887 0.95883 0.96838 0.94944 1.21080 1.00316 0.98200 0.94190 1.21284 0.97349 0.98469 0.98465 1.21366 0.95105 1.00078 0.98623 1.21439 1.00623 0.99649 0.92738 1.21274 0.94738 0.97456 1.00401 1.23134 1.01961 0.94850 0.97307 1.23180 1.00887 0.97177 0.96556 1.20324 0.88963 0.84789 0.91173 0.99499 1.21518 1.43619 0.98434 0.95536 0.92162 1.25889 0.93711 0.98158 0.99976 1.70173 1.41349 1.26980 1.14897 0.85631 0.77774 0.80031 0.78614 1.20453 1.20614 1.18549 1.88787 1.67244 1.44525 1.29127 0.93454 0.94052 0.89248 0.93126 0.87820 0.89348 0.86357 0.84017 0.83198 0.83886 0.90589 0.88292 0.90879 0.91980 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 7.98 71.98 0.57 -4.14 16 2 C 0.09 3.34 0.94 -10.33 -0.01 3.33 16 3 C -0.08 -2.67 4.55 29.85 0.14 -2.53 16 4 C -0.08 -2.66 4.25 -19.86 -0.08 -2.75 16 5 C -0.12 -4.82 9.49 22.27 0.21 -4.61 16 6 C -0.14 -4.79 10.05 22.27 0.22 -4.57 16 7 C -0.13 -3.78 10.05 22.27 0.22 -3.56 16 8 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 9 C -0.12 -3.41 7.86 22.27 0.18 -3.24 16 10 C -0.14 -4.50 6.09 31.85 0.19 -4.31 16 11 C -0.14 -5.76 6.53 32.05 0.21 -5.55 16 12 C 0.20 10.84 3.22 30.51 0.10 10.94 16 13 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 14 C -0.55 -32.17 8.80 25.60 0.23 -31.95 16 15 H 0.06 3.39 7.76 -2.91 -0.02 3.36 16 16 C 0.02 1.45 5.43 84.65 0.46 1.91 16 17 N -0.90 -55.35 13.05 21.45 0.28 -55.07 16 18 Si 0.95 45.36 29.54 68.60 2.03 47.39 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 22 O -0.38 -19.73 9.67 -148.98 -1.44 -21.17 16 23 H 0.05 1.71 6.13 -2.39 -0.01 1.69 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 27 H 0.10 2.69 8.09 -2.39 -0.02 2.67 16 28 H 0.09 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 30 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.14 3.14 8.05 -2.91 -0.02 3.12 16 33 H 0.08 2.34 7.85 -2.39 -0.02 2.32 16 34 H 0.10 2.61 7.82 -2.39 -0.02 2.59 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.06 2.55 8.04 -2.38 -0.02 2.53 16 37 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -69.44 303.77 4.75 -64.69 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 1.02 Total: 18.21 kcal Atomic # 6 Polarization: -56.91 SS G_CDS: 2.86 Total: -54.05 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -1.44 Total: -21.17 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -69.44 4.75 -64.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390511693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.872 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds