Wall clock time and date at job start Mon Mar 30 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.87140 * 2 1 4 4 C 1.50707 * 109.47301 * 305.70275 * 3 2 1 5 5 C 1.38238 * 119.99792 * 90.00016 * 4 3 2 6 6 C 1.38235 * 119.99712 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.00220 * 359.97124 * 6 5 4 8 8 C 1.38233 * 120.00037 * 0.28719 * 7 6 5 9 9 C 1.38234 * 120.00179 * 269.97953 * 4 3 2 10 10 C 1.54100 * 109.88154 * 121.01020 * 2 1 3 11 11 C 1.54811 * 104.18890 * 117.54177 * 10 2 1 12 12 C 1.54997 * 102.09311 * 339.12018 * 11 10 2 13 13 H 1.09002 * 110.62053 * 278.52424 * 12 11 10 14 14 C 1.50693 * 110.61936 * 155.68182 * 12 11 10 15 15 H 1.08000 * 120.00021 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00200 * 180.02562 * 14 12 11 17 17 N 1.31522 * 119.99965 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00358 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46893 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47082 * 119.99932 * 18 16 14 21 21 H 1.48493 * 109.47267 * 240.00068 * 18 16 14 22 22 O 1.43750 * 109.87550 * 238.99330 * 2 1 3 23 23 H 1.09003 * 109.47512 * 59.29718 * 1 2 3 24 24 H 1.09000 * 109.47100 * 179.29957 * 1 2 3 25 25 H 1.09006 * 109.47190 * 299.29682 * 1 2 3 26 26 H 1.09005 * 109.47610 * 185.70579 * 3 2 1 27 27 H 1.09000 * 109.47256 * 65.69920 * 3 2 1 28 28 H 1.08005 * 120.00068 * 359.97438 * 5 4 3 29 29 H 1.07999 * 119.99770 * 179.97438 * 6 5 4 30 30 H 1.08002 * 119.99744 * 180.02562 * 7 6 5 31 31 H 1.07998 * 120.00395 * 179.72811 * 8 7 6 32 32 H 1.07999 * 119.99968 * 359.97438 * 9 4 3 33 33 H 1.08993 * 110.48753 * 236.21903 * 10 2 1 34 34 H 1.09007 * 110.48458 * 358.86502 * 10 2 1 35 35 H 1.08990 * 110.90623 * 97.31632 * 11 10 2 36 36 H 1.08998 * 110.90845 * 220.92597 * 11 10 2 37 37 H 0.96996 * 119.99923 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4388 0.0000 4 6 1.4410 2.1932 -1.1538 5 6 0.2474 2.8696 -0.9843 6 6 -0.3110 3.5619 -2.0425 7 6 0.3245 3.5784 -3.2700 8 6 1.5154 2.8976 -3.4410 9 6 2.0761 2.2091 -2.3815 10 6 2.0541 -0.7466 1.2420 11 6 2.8357 -1.9494 0.6600 12 6 2.2334 -2.0703 -0.7630 13 1 1.2877 -2.6116 -0.7349 14 6 3.2041 -2.7493 -1.6943 15 1 4.1669 -3.0737 -1.3280 16 6 2.8632 -2.9565 -3.0141 17 7 1.6906 -2.5619 -3.4601 18 14 4.0669 -3.7976 -4.1688 19 1 5.3062 -4.1421 -3.4267 20 1 3.4521 -5.0375 -4.7073 21 1 4.3989 -2.8824 -5.2901 22 8 2.0187 -0.6964 -1.1587 23 1 -0.3634 0.5247 -0.8836 24 1 -0.3633 -1.0276 -0.0126 25 1 -0.3634 0.5029 0.8963 26 1 3.1353 1.4331 -0.1022 27 1 1.7758 1.9243 0.9366 28 1 -0.2489 2.8571 -0.0251 29 1 -1.2437 4.0900 -1.9102 30 1 -0.1116 4.1197 -4.0966 31 1 2.0096 2.9068 -4.4012 32 1 3.0090 1.6812 -2.5137 33 1 2.7176 -0.1046 1.8212 34 1 1.2237 -1.0929 1.8575 35 1 3.9031 -1.7338 0.6135 36 1 2.6476 -2.8529 1.2399 37 1 1.4509 -2.7073 -4.3887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390511700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:23 Heat of formation + Delta-G solvation = -34.766021 kcal Electronic energy + Delta-G solvation = -18244.077279 eV Core-core repulsion = 15564.597091 eV Total energy + Delta-G solvation = -2679.480187 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.33270 -37.99076 -33.56592 -32.13516 -30.90309 -30.45219 -29.59891 -26.70326 -26.11295 -23.20832 -22.07044 -20.97244 -20.16112 -18.93056 -16.58532 -16.27538 -15.14672 -14.88502 -14.68960 -14.38511 -14.05308 -13.70092 -13.00190 -12.85893 -12.72012 -12.48850 -11.97362 -11.65148 -11.61517 -11.45335 -11.03033 -10.91238 -10.86505 -10.54800 -10.49971 -10.27974 -10.06663 -9.78929 -9.62587 -9.02582 -8.57378 -8.43264 -8.23365 -7.88545 -5.99276 -4.11625 1.81753 1.88131 3.30384 3.38438 3.41949 4.24422 4.43330 4.94172 5.24026 5.28038 5.38791 5.47451 5.49656 5.54221 5.69840 5.78658 5.86429 5.95586 6.04154 6.08293 6.15706 6.22133 6.39140 6.47507 6.48094 6.57291 6.68343 6.73162 6.85655 6.87335 6.88429 6.97113 7.04852 7.19258 7.48146 7.57451 7.91206 8.28621 8.65605 9.01745 9.58708 11.08182 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.008290 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.411667 B = 3376.724095 C = 4291.131551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 C -0.072 4.072 4 C -0.060 4.060 5 C -0.121 4.121 6 C -0.130 4.130 7 C -0.133 4.133 8 C -0.120 4.120 9 C -0.089 4.089 10 C -0.146 4.146 11 C -0.148 4.148 12 C 0.209 3.791 13 H 0.026 0.974 14 C -0.528 4.528 15 H 0.063 0.937 16 C 0.077 3.923 17 N -0.861 5.861 18 Si 0.889 3.111 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 O -0.341 6.341 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 9.780 5.371 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.058 3.942 3 C -0.109 4.109 4 C -0.060 4.060 5 C -0.139 4.139 6 C -0.148 4.148 7 C -0.151 4.151 8 C -0.139 4.139 9 C -0.107 4.107 10 C -0.184 4.184 11 C -0.185 4.185 12 C 0.154 3.846 13 H 0.043 0.957 14 C -0.565 4.565 15 H 0.081 0.919 16 C -0.128 4.128 17 N -0.497 5.497 18 Si 0.717 3.283 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 O -0.260 6.260 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.269 9.874 5.011 11.303 hybrid contribution 0.414 -0.588 -0.555 0.908 sum -1.856 9.286 4.456 10.466 Atomic orbital electron populations 1.22279 0.96584 1.01782 1.00802 1.21791 0.92795 0.91266 0.88391 1.20806 1.00572 0.94250 0.95271 1.19780 0.94752 0.95899 0.95568 1.20965 0.95812 0.98385 0.98775 1.20971 0.99691 1.00537 0.93561 1.20999 0.96170 1.00802 0.97137 1.21105 0.96194 0.97883 0.98670 1.21111 1.00556 0.96801 0.92234 1.22994 0.99627 0.98200 0.97609 1.23187 0.99842 0.95940 0.99572 1.20658 0.94699 0.80734 0.88525 0.95656 1.21020 1.02484 1.37938 0.95082 0.91921 1.25073 0.94980 0.94501 0.98273 1.70049 1.19968 1.44330 1.15382 0.86600 0.81512 0.79186 0.81043 1.19641 1.20947 1.20877 1.89326 1.84457 1.23092 1.29158 0.91948 0.92749 0.93674 0.90738 0.91291 0.86760 0.86893 0.86941 0.86645 0.85749 0.92152 0.92046 0.91885 0.92457 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 7.86 37.16 0.29 -2.63 16 2 C 0.10 1.95 0.86 -90.05 -0.08 1.87 16 3 C -0.07 -1.22 4.47 -27.88 -0.12 -1.35 16 4 C -0.06 -1.05 4.26 -104.62 -0.45 -1.50 16 5 C -0.12 -1.88 7.86 -39.58 -0.31 -2.19 16 6 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 7 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 8 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 9 C -0.09 -1.65 9.48 -39.58 -0.38 -2.02 16 10 C -0.15 -2.63 6.27 -25.20 -0.16 -2.79 16 11 C -0.15 -3.09 6.55 -24.72 -0.16 -3.25 16 12 C 0.21 5.41 3.03 -26.83 -0.08 5.33 16 13 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 14 C -0.53 -14.87 8.82 -34.44 -0.30 -15.17 16 15 H 0.06 1.72 7.77 -52.49 -0.41 1.31 16 16 C 0.08 2.21 5.44 -17.82 -0.10 2.11 16 17 N -0.86 -25.68 13.13 55.43 0.73 -24.95 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 O -0.34 -8.64 9.98 -35.23 -0.35 -8.99 16 23 H 0.06 1.23 6.14 -51.93 -0.32 0.91 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 27 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 28 H 0.11 1.54 8.05 -52.48 -0.42 1.12 16 29 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.06 0.95 7.70 -51.93 -0.40 0.55 16 34 H 0.06 1.01 7.70 -51.93 -0.40 0.61 16 35 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 303.68 15.07 4.58 4.58 Total: -1.00 -30.61 303.68 -8.83 -39.44 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.72 Total: 2.13 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -3.04 Total: -28.67 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.73 Total: -24.95 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.35 Total: -8.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.61 -8.83 -39.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390511700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.674 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds