Wall clock time and date at job start Mon Mar 30 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.82313 * 2 1 4 4 H 1.08005 * 120.00211 * 120.89128 * 3 2 1 5 5 C 1.37876 * 119.99913 * 300.87755 * 3 2 1 6 6 N 1.31510 * 120.00204 * 0.02562 * 5 3 2 7 7 Si 1.86804 * 119.99928 * 180.02562 * 5 3 2 8 8 H 1.48498 * 109.46865 * 60.00340 * 7 5 3 9 9 H 1.48496 * 109.47091 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47068 * 300.00197 * 7 5 3 11 11 C 1.54380 * 109.82697 * 120.88250 * 2 1 3 12 12 C 1.55309 * 102.25294 * 98.24470 * 11 2 1 13 13 C 1.54948 * 100.93791 * 34.13692 * 12 11 2 14 14 H 1.08998 * 110.31470 * 82.57197 * 13 12 11 15 15 C 1.53000 * 110.30552 * 204.63965 * 13 12 11 16 16 C 1.50706 * 109.47112 * 184.99598 * 15 13 12 17 17 C 1.38238 * 119.99758 * 89.99849 * 16 15 13 18 18 C 1.38234 * 119.99693 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00240 * 0.02562 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.26327 * 19 18 17 21 21 C 1.38234 * 120.00194 * 270.02175 * 16 15 13 22 22 O 1.43233 * 109.90618 * 239.05824 * 2 1 3 23 23 H 1.08995 * 109.47459 * 299.11919 * 1 2 3 24 24 H 1.09002 * 109.46719 * 59.11457 * 1 2 3 25 25 H 1.08997 * 109.47557 * 179.11419 * 1 2 3 26 26 H 0.96998 * 120.00478 * 179.97438 * 6 5 3 27 27 H 1.09000 * 110.84826 * 340.06118 * 11 2 1 28 28 H 1.08994 * 111.02726 * 216.51577 * 11 2 1 29 29 H 1.08993 * 111.12862 * 276.21214 * 12 11 2 30 30 H 1.09003 * 111.15982 * 152.06364 * 12 11 2 31 31 H 1.09004 * 109.47390 * 64.99792 * 15 13 12 32 32 H 1.08997 * 109.47467 * 304.99718 * 15 13 12 33 33 H 1.08005 * 120.00103 * 0.02562 * 17 16 15 34 34 H 1.07999 * 119.99751 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.99744 * 179.97438 * 19 18 17 36 36 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 37 37 H 1.07999 * 119.99990 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4176 0.0000 4 1 2.6759 1.7629 0.8027 5 6 1.6983 2.2740 -1.0248 6 7 0.9251 1.8538 -2.0021 7 14 2.3324 4.0311 -1.0252 8 1 3.8172 4.0215 -1.0471 9 1 1.8237 4.7406 -2.2264 10 1 1.8599 4.7281 0.1979 11 6 2.0536 -0.7454 1.2464 12 6 2.3702 -2.1558 0.6782 13 6 2.8436 -1.7967 -0.7529 14 1 3.8929 -1.5020 -0.7415 15 6 2.6369 -2.9850 -1.6943 16 6 3.2144 -2.6599 -3.0478 17 6 4.5335 -2.9643 -3.3276 18 6 5.0630 -2.6666 -4.5694 19 6 4.2737 -2.0641 -5.5310 20 6 2.9563 -1.7543 -5.2492 21 6 2.4252 -2.0570 -4.0093 22 8 2.0177 -0.6925 -1.1551 23 1 -0.3634 0.5001 0.8977 24 1 -0.3633 0.5275 -0.8820 25 1 -0.3634 -1.0275 -0.0159 26 1 0.6836 2.4563 -2.7228 27 1 1.2844 -0.8013 2.0166 28 1 2.9555 -0.2724 1.6348 29 1 1.4760 -2.7784 0.6516 30 1 3.1657 -2.6390 1.2454 31 1 1.5707 -3.1887 -1.7936 32 1 3.1381 -3.8629 -1.2867 33 1 5.1501 -3.4354 -2.5764 34 1 6.0937 -2.9040 -4.7879 35 1 4.6876 -1.8312 -6.5010 36 1 2.3408 -1.2796 -5.9990 37 1 1.3946 -1.8192 -3.7907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390642924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:15 Heat of formation + Delta-G solvation = -31.344661 kcal Electronic energy + Delta-G solvation = -18177.198615 eV Core-core repulsion = 15497.866788 eV Total energy + Delta-G solvation = -2679.331826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.04731 -38.05048 -33.60208 -32.09549 -30.93740 -30.40998 -29.57491 -26.79797 -25.18930 -23.18759 -22.10598 -20.93982 -20.07561 -19.26158 -16.43836 -16.29084 -15.55444 -14.73230 -14.61780 -14.37468 -14.00584 -13.20845 -12.99405 -12.87901 -12.51840 -12.10870 -12.08743 -11.60894 -11.45133 -11.12005 -10.96628 -10.84843 -10.64219 -10.52658 -10.47256 -10.31445 -10.06896 -9.86779 -9.37686 -9.02720 -8.45010 -8.41933 -8.19359 -7.73973 -5.88428 -4.04309 1.82031 1.88748 3.34886 3.39567 3.42135 4.25070 4.47345 4.93378 5.24871 5.28936 5.39466 5.49545 5.51617 5.60299 5.69598 5.86704 5.91190 5.97666 6.10485 6.16929 6.31185 6.38614 6.49857 6.55337 6.61777 6.66060 6.76951 6.87110 6.93782 6.97639 7.00021 7.15022 7.20163 7.47596 7.49067 7.84436 8.16215 8.44051 8.72237 9.12933 9.66602 11.13035 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019158 B = 0.008544 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.179327 B = 3276.557242 C = 4146.658084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.229 3.771 3 C -0.535 4.535 4 H 0.055 0.945 5 C 0.083 3.917 6 N -0.858 5.858 7 Si 0.885 3.115 8 H -0.277 1.277 9 H -0.287 1.287 10 H -0.278 1.278 11 C -0.141 4.141 12 C -0.154 4.154 13 C 0.084 3.916 14 H 0.051 0.949 15 C -0.079 4.079 16 C -0.065 4.065 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.120 4.120 21 C -0.086 4.086 22 O -0.344 6.344 23 H 0.033 0.967 24 H 0.090 0.910 25 H 0.010 0.990 26 H 0.258 0.742 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 -9.505 -1.999 10.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.191 3.809 3 C -0.573 4.573 4 H 0.073 0.927 5 C -0.122 4.122 6 N -0.495 5.495 7 Si 0.712 3.288 8 H -0.203 1.203 9 H -0.213 1.213 10 H -0.203 1.203 11 C -0.179 4.179 12 C -0.191 4.191 13 C 0.025 3.975 14 H 0.069 0.931 15 C -0.116 4.116 16 C -0.065 4.065 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.152 4.152 20 C -0.138 4.138 21 C -0.104 4.104 22 O -0.263 6.263 23 H 0.052 0.948 24 H 0.108 0.892 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.568 -9.387 -2.381 10.320 hybrid contribution 0.518 1.065 0.213 1.204 sum 4.086 -8.321 -2.168 9.521 Atomic orbital electron populations 1.21968 0.97512 0.97498 1.02552 1.19605 0.90851 0.90331 0.80086 1.21242 1.32437 0.94997 1.08579 0.92651 1.24958 0.94197 0.97880 0.95179 1.69926 1.34278 1.34969 1.10309 0.86804 0.79441 0.85200 0.77320 1.20295 1.21264 1.20315 1.23206 1.00716 0.94099 0.99858 1.23268 1.00455 0.98257 0.97163 1.22630 0.95696 0.88154 0.91013 0.93145 1.20822 1.01207 0.97511 0.92110 1.19835 0.93730 0.97490 0.95417 1.20964 0.95021 1.01567 0.96726 1.20971 0.99183 1.00473 0.94034 1.21011 0.94522 1.00522 0.99116 1.21117 0.95491 0.99917 0.97305 1.21122 1.00686 0.96191 0.92444 1.88753 1.65292 1.40397 1.31886 0.94756 0.89169 0.97078 0.93173 0.92344 0.91928 0.91636 0.92079 0.90767 0.91209 0.86761 0.86875 0.86925 0.86575 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.51 37.16 0.32 -3.05 16 2 C 0.23 5.74 0.82 -91.05 -0.07 5.66 16 3 C -0.53 -14.91 8.22 -34.44 -0.28 -15.20 16 4 H 0.06 1.53 7.52 -52.48 -0.39 1.13 16 5 C 0.08 2.33 5.26 -17.82 -0.09 2.24 16 6 N -0.86 -24.70 10.92 55.43 0.61 -24.10 16 7 Si 0.88 21.59 29.54 -169.99 -5.02 16.57 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C -0.14 -2.96 6.07 -24.78 -0.15 -3.11 16 12 C -0.15 -2.76 6.57 -24.48 -0.16 -2.92 16 13 C 0.08 1.70 3.39 -25.70 -0.09 1.61 16 14 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.08 -1.34 5.08 -27.88 -0.14 -1.48 16 16 C -0.06 -1.15 5.03 -104.62 -0.53 -1.67 16 17 C -0.12 -1.98 9.70 -39.58 -0.38 -2.36 16 18 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 19 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 20 C -0.12 -2.01 10.05 -39.58 -0.40 -2.40 16 21 C -0.09 -1.60 9.59 -39.58 -0.38 -1.98 16 22 O -0.34 -8.67 9.65 -35.23 -0.34 -9.01 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.09 2.44 6.01 -51.93 -0.31 2.13 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.06 1.13 7.82 -51.93 -0.41 0.73 16 28 H 0.06 1.32 7.66 -51.93 -0.40 0.92 16 29 H 0.06 1.11 8.06 -51.93 -0.42 0.69 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 32 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 33 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.13 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -29.94 304.21 -9.04 -38.98 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.71 Total: 2.37 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -3.16 Total: -29.39 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.61 Total: -24.10 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.34 Total: -9.01 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.94 -9.04 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390642924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.635 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds