Wall clock time and date at job start Mon Mar 30 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.82313 * 2 1 4 4 H 1.08005 * 120.00211 * 120.89128 * 3 2 1 5 5 C 1.37876 * 119.99913 * 300.87755 * 3 2 1 6 6 N 1.31510 * 120.00204 * 0.02562 * 5 3 2 7 7 Si 1.86804 * 119.99928 * 180.02562 * 5 3 2 8 8 H 1.48498 * 109.46865 * 60.00340 * 7 5 3 9 9 H 1.48496 * 109.47091 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47068 * 300.00197 * 7 5 3 11 11 C 1.54380 * 109.82697 * 120.88250 * 2 1 3 12 12 C 1.55309 * 102.25294 * 98.24470 * 11 2 1 13 13 C 1.54948 * 100.93791 * 34.13692 * 12 11 2 14 14 H 1.08998 * 110.31470 * 82.57197 * 13 12 11 15 15 C 1.53000 * 110.30552 * 204.63965 * 13 12 11 16 16 C 1.50706 * 109.47112 * 184.99598 * 15 13 12 17 17 C 1.38238 * 119.99758 * 89.99849 * 16 15 13 18 18 C 1.38234 * 119.99693 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00240 * 0.02562 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.26327 * 19 18 17 21 21 C 1.38234 * 120.00194 * 270.02175 * 16 15 13 22 22 O 1.43233 * 109.90618 * 239.05824 * 2 1 3 23 23 H 1.08995 * 109.47459 * 299.11919 * 1 2 3 24 24 H 1.09002 * 109.46719 * 59.11457 * 1 2 3 25 25 H 1.08997 * 109.47557 * 179.11419 * 1 2 3 26 26 H 0.96998 * 120.00478 * 179.97438 * 6 5 3 27 27 H 1.09000 * 110.84826 * 340.06118 * 11 2 1 28 28 H 1.08994 * 111.02726 * 216.51577 * 11 2 1 29 29 H 1.08993 * 111.12862 * 276.21214 * 12 11 2 30 30 H 1.09003 * 111.15982 * 152.06364 * 12 11 2 31 31 H 1.09004 * 109.47390 * 64.99792 * 15 13 12 32 32 H 1.08997 * 109.47467 * 304.99718 * 15 13 12 33 33 H 1.08005 * 120.00103 * 0.02562 * 17 16 15 34 34 H 1.07999 * 119.99751 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.99744 * 179.97438 * 19 18 17 36 36 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 37 37 H 1.07999 * 119.99990 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4176 0.0000 4 1 2.6759 1.7629 0.8027 5 6 1.6983 2.2740 -1.0248 6 7 0.9251 1.8538 -2.0021 7 14 2.3324 4.0311 -1.0252 8 1 3.8172 4.0215 -1.0471 9 1 1.8237 4.7406 -2.2264 10 1 1.8599 4.7281 0.1979 11 6 2.0536 -0.7454 1.2464 12 6 2.3702 -2.1558 0.6782 13 6 2.8436 -1.7967 -0.7529 14 1 3.8929 -1.5020 -0.7415 15 6 2.6369 -2.9850 -1.6943 16 6 3.2144 -2.6599 -3.0478 17 6 4.5335 -2.9643 -3.3276 18 6 5.0630 -2.6666 -4.5694 19 6 4.2737 -2.0641 -5.5310 20 6 2.9563 -1.7543 -5.2492 21 6 2.4252 -2.0570 -4.0093 22 8 2.0177 -0.6925 -1.1551 23 1 -0.3634 0.5001 0.8977 24 1 -0.3633 0.5275 -0.8820 25 1 -0.3634 -1.0275 -0.0159 26 1 0.6836 2.4563 -2.7228 27 1 1.2844 -0.8013 2.0166 28 1 2.9555 -0.2724 1.6348 29 1 1.4760 -2.7784 0.6516 30 1 3.1657 -2.6390 1.2454 31 1 1.5707 -3.1887 -1.7936 32 1 3.1381 -3.8629 -1.2867 33 1 5.1501 -3.4354 -2.5764 34 1 6.0937 -2.9040 -4.7879 35 1 4.6876 -1.8312 -6.5010 36 1 2.3408 -1.2796 -5.9990 37 1 1.3946 -1.8192 -3.7907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390642924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:14 Heat of formation + Delta-G solvation = -46.801583 kcal Electronic energy + Delta-G solvation = -18177.868877 eV Core-core repulsion = 15497.866788 eV Total energy + Delta-G solvation = -2680.002089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49389 -39.56937 -35.34680 -33.79578 -32.66750 -31.65353 -31.24510 -28.31913 -27.26541 -24.77444 -23.35813 -22.36765 -21.56318 -21.06921 -18.39663 -17.60141 -17.15174 -16.54954 -15.99134 -15.78765 -15.66162 -15.00417 -14.42412 -14.17441 -14.04939 -13.78628 -13.66236 -13.21925 -12.93160 -12.88917 -12.80064 -12.53421 -12.34620 -12.23949 -12.04885 -11.89024 -11.73215 -11.41189 -11.10205 -10.87699 -10.53183 -9.71512 -9.70174 -9.39331 -7.98798 -6.21667 0.56843 0.62199 1.39125 1.40384 1.47176 2.43561 2.97965 3.13804 3.58049 3.94383 4.05334 4.10673 4.21169 4.26960 4.37009 4.38952 4.53025 4.67731 4.73366 4.76226 4.91724 4.93115 4.99447 5.01112 5.06342 5.14473 5.25289 5.30612 5.32212 5.43403 5.57201 5.65808 5.71418 5.71910 5.90280 6.16675 6.25195 6.38705 6.72125 7.22611 7.54302 9.00327 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019158 B = 0.008544 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.179327 B = 3276.557242 C = 4146.658084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.213 3.787 3 C -0.556 4.556 4 H 0.049 0.951 5 C 0.035 3.965 6 N -0.883 5.883 7 Si 0.941 3.059 8 H -0.278 1.278 9 H -0.285 1.285 10 H -0.268 1.268 11 C -0.139 4.139 12 C -0.138 4.138 13 C 0.074 3.926 14 H 0.038 0.962 15 C -0.070 4.070 16 C -0.085 4.085 17 C -0.130 4.130 18 C -0.128 4.128 19 C -0.135 4.135 20 C -0.136 4.136 21 C -0.117 4.117 22 O -0.376 6.376 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.028 0.972 26 H 0.255 0.745 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 -10.701 -1.579 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.175 3.825 3 C -0.594 4.594 4 H 0.067 0.933 5 C -0.167 4.167 6 N -0.520 5.520 7 Si 0.767 3.233 8 H -0.203 1.203 9 H -0.210 1.210 10 H -0.193 1.193 11 C -0.177 4.177 12 C -0.176 4.176 13 C 0.016 3.984 14 H 0.056 0.944 15 C -0.107 4.107 16 C -0.085 4.085 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.136 4.136 22 O -0.296 6.296 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.328 -10.588 -1.949 12.012 hybrid contribution 0.011 1.415 0.051 1.416 sum 5.339 -9.173 -1.898 10.782 Atomic orbital electron populations 1.21837 0.97723 0.98075 1.01123 1.19692 0.90912 0.89863 0.82015 1.21660 1.32263 0.97085 1.08368 0.93270 1.25663 0.94556 1.01455 0.95044 1.70083 1.35318 1.35917 1.10729 0.85901 0.78658 0.81117 0.77590 1.20316 1.21005 1.19316 1.23111 1.00675 0.95459 0.98473 1.23220 1.02125 0.96749 0.95461 1.22856 0.94322 0.87893 0.93342 0.94431 1.20768 1.01245 0.97273 0.91421 1.20024 0.94785 0.98177 0.95523 1.21308 0.94347 1.01199 0.97909 1.21434 1.00701 0.99053 0.93344 1.21391 0.93669 0.99619 1.00622 1.21339 0.96814 1.00345 0.96943 1.21114 1.00016 0.98303 0.94137 1.88694 1.66096 1.42257 1.32546 0.94343 0.92370 0.95317 0.93545 0.90916 0.92557 0.90251 0.88665 0.91552 0.87618 0.84230 0.83444 0.83997 0.85812 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.51 71.98 0.61 -5.82 16 2 C 0.21 10.75 0.82 -11.07 -0.01 10.74 16 3 C -0.56 -31.47 8.22 25.60 0.21 -31.26 16 4 H 0.05 2.75 7.52 -2.91 -0.02 2.72 16 5 C 0.04 2.01 5.26 84.66 0.45 2.46 16 6 N -0.88 -52.42 10.92 21.45 0.23 -52.19 16 7 Si 0.94 44.92 29.54 68.60 2.03 46.95 16 8 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 C -0.14 -5.66 6.07 31.86 0.19 -5.46 16 12 C -0.14 -4.60 6.57 32.05 0.21 -4.39 16 13 C 0.07 2.92 3.39 31.26 0.11 3.03 16 14 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 15 C -0.07 -2.28 5.08 29.85 0.15 -2.13 16 16 C -0.09 -2.97 5.03 -19.86 -0.10 -3.07 16 17 C -0.13 -3.82 9.70 22.27 0.22 -3.60 16 18 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 19 C -0.14 -3.83 10.05 22.27 0.22 -3.60 16 20 C -0.14 -4.58 10.05 22.27 0.22 -4.36 16 21 C -0.12 -4.50 9.59 22.27 0.21 -4.29 16 22 O -0.38 -19.27 9.65 -148.98 -1.44 -20.70 16 23 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.06 3.25 6.01 -2.39 -0.01 3.24 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.07 2.69 7.82 -2.39 -0.02 2.67 16 28 H 0.06 2.31 7.66 -2.39 -0.02 2.29 16 29 H 0.08 2.44 8.06 -2.39 -0.02 2.42 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.07 2.24 8.09 -2.38 -0.02 2.22 16 32 H 0.11 2.64 8.09 -2.39 -0.02 2.62 16 33 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 34 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 35 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.10 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -66.06 304.21 4.77 -61.29 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.02 Total: 19.59 kcal Atomic # 6 Polarization: -57.86 SS G_CDS: 2.92 Total: -54.93 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.23 Total: -52.19 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.44 Total: -20.70 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.06 4.77 -61.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390642924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.487 kcal (2) G-P(sol) polarization free energy of solvation -66.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds