Wall clock time and date at job start Mon Mar 30 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.86998 * 2 1 4 4 H 1.08004 * 119.99915 * 239.54864 * 3 2 1 5 5 C 1.37873 * 120.00042 * 59.55471 * 3 2 1 6 6 N 1.31513 * 120.00178 * 359.97438 * 5 3 2 7 7 Si 1.86804 * 120.00270 * 180.02562 * 5 3 2 8 8 H 1.48496 * 109.47182 * 89.99349 * 7 5 3 9 9 H 1.48495 * 109.47399 * 209.99688 * 7 5 3 10 10 H 1.48501 * 109.46724 * 329.99999 * 7 5 3 11 11 C 1.54101 * 109.87883 * 238.83650 * 2 1 3 12 12 C 1.54984 * 104.25331 * 242.73818 * 11 2 1 13 13 C 1.55000 * 102.01144 * 20.67039 * 12 11 2 14 14 H 1.09001 * 110.61811 * 81.75295 * 13 12 11 15 15 C 1.53001 * 110.61534 * 204.59208 * 13 12 11 16 16 C 1.50706 * 109.46589 * 182.81902 * 15 13 12 17 17 C 1.38237 * 119.99744 * 90.00605 * 16 15 13 18 18 C 1.38235 * 119.99712 * 180.02562 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.94731 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00223 * 270.01815 * 16 15 13 22 22 O 1.43748 * 109.88060 * 121.00579 * 2 1 3 23 23 H 1.09000 * 109.47331 * 300.44489 * 1 2 3 24 24 H 1.08998 * 109.47135 * 60.44959 * 1 2 3 25 25 H 1.09002 * 109.47259 * 180.44592 * 1 2 3 26 26 H 0.97000 * 120.00088 * 179.97438 * 6 5 3 27 27 H 1.08991 * 110.48939 * 1.28245 * 11 2 1 28 28 H 1.09002 * 110.48468 * 123.79741 * 11 2 1 29 29 H 1.08997 * 110.84373 * 262.54327 * 12 11 2 30 30 H 1.08998 * 111.05037 * 138.88455 * 12 11 2 31 31 H 1.08998 * 109.47218 * 62.82647 * 15 13 12 32 32 H 1.08993 * 109.47154 * 302.82081 * 15 13 12 33 33 H 1.08005 * 120.00088 * 359.97438 * 17 16 15 34 34 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 36 36 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 37 37 H 1.07998 * 119.99975 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4173 0.0000 4 1 2.6715 1.7640 -0.8063 5 6 1.7074 2.2712 1.0294 6 7 0.9408 1.8492 2.0110 7 14 2.3417 4.0283 1.0291 8 1 1.3744 4.9036 0.3197 9 1 2.4999 4.4977 2.4289 10 1 3.6552 4.0802 0.3381 11 6 2.0539 -0.7499 -1.2401 12 6 2.8307 -1.9571 -0.6559 13 6 2.2280 -2.0703 0.7676 14 1 1.2816 -2.6105 0.7419 15 6 3.2126 -2.7566 1.7165 16 6 2.5753 -2.9153 3.0729 17 6 1.8533 -4.0566 3.3680 18 6 1.2683 -4.2019 4.6120 19 6 1.4060 -3.2064 5.5612 20 6 2.1239 -2.0630 5.2643 21 6 2.7123 -1.9194 4.0217 22 8 2.0188 -0.6964 1.1587 23 1 -0.3634 0.5207 0.8860 24 1 -0.3633 0.5068 -0.8940 25 1 -0.3634 -1.0276 0.0080 26 1 0.7056 2.4499 2.7354 27 1 1.2238 -1.0956 -1.8559 28 1 2.7178 -0.1095 -1.8209 29 1 3.8990 -1.7456 -0.6104 30 1 2.6391 -2.8621 -1.2325 31 1 4.1132 -2.1494 1.8071 32 1 3.4744 -3.7380 1.3209 33 1 1.7457 -4.8344 2.6265 34 1 0.7039 -5.0934 4.8425 35 1 0.9492 -3.3202 6.5332 36 1 2.2278 -1.2833 6.0043 37 1 3.2758 -1.0275 3.7909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390643056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:18 Heat of formation + Delta-G solvation = -31.457363 kcal Electronic energy + Delta-G solvation = -18170.084543 eV Core-core repulsion = 15490.747830 eV Total energy + Delta-G solvation = -2679.336713 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.04980 -38.05403 -33.59462 -32.12214 -30.86404 -30.42172 -29.55776 -26.85987 -25.23784 -23.23806 -22.11683 -20.88098 -19.99482 -19.22143 -16.69326 -16.30961 -15.37829 -14.74781 -14.62739 -14.31292 -13.83024 -13.27315 -13.00142 -12.94745 -12.51494 -12.34637 -12.10452 -11.72125 -11.34456 -11.13535 -11.00194 -10.85109 -10.63017 -10.48176 -10.41726 -10.30720 -9.93308 -9.76834 -9.45714 -9.01503 -8.47834 -8.44787 -8.19428 -7.87770 -5.91165 -4.06838 1.80544 1.87439 3.31738 3.39004 3.41892 4.23740 4.44989 4.95298 5.23669 5.26793 5.38503 5.49586 5.51755 5.66009 5.73979 5.84670 5.90673 5.96520 6.08178 6.17525 6.33001 6.42246 6.47517 6.57335 6.65550 6.66623 6.83629 6.85443 6.91168 6.95817 6.98028 7.14239 7.23163 7.35797 7.47617 7.81957 8.16936 8.41288 8.64713 9.07772 9.63000 11.10710 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.007955 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.602614 B = 3519.120035 C = 4294.131247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.226 3.774 3 C -0.523 4.523 4 H 0.059 0.941 5 C 0.080 3.920 6 N -0.857 5.857 7 Si 0.886 3.114 8 H -0.281 1.281 9 H -0.286 1.286 10 H -0.274 1.274 11 C -0.142 4.142 12 C -0.148 4.148 13 C 0.072 3.928 14 H 0.047 0.953 15 C -0.073 4.073 16 C -0.066 4.066 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.119 4.119 21 C -0.086 4.086 22 O -0.335 6.335 23 H 0.089 0.911 24 H 0.033 0.967 25 H 0.008 0.992 26 H 0.258 0.742 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 -10.043 2.187 10.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.188 3.812 3 C -0.560 4.560 4 H 0.078 0.922 5 C -0.125 4.125 6 N -0.493 5.493 7 Si 0.714 3.286 8 H -0.207 1.207 9 H -0.212 1.212 10 H -0.199 1.199 11 C -0.180 4.180 12 C -0.186 4.186 13 C 0.013 3.987 14 H 0.065 0.935 15 C -0.110 4.110 16 C -0.066 4.066 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.138 4.138 21 C -0.104 4.104 22 O -0.254 6.254 23 H 0.107 0.893 24 H 0.052 0.948 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.078 -9.888 2.566 10.424 hybrid contribution 0.117 0.904 -0.199 0.933 sum 2.195 -8.983 2.367 9.546 Atomic orbital electron populations 1.22161 0.98506 0.97320 1.02591 1.19617 0.90407 0.90893 0.80253 1.21055 1.32783 0.93914 1.08262 0.92241 1.25009 0.94265 0.98008 0.95222 1.69975 1.34457 1.34922 1.09971 0.86709 0.79402 0.85259 0.77237 1.20691 1.21195 1.19909 1.23090 0.98757 0.96114 1.00005 1.23131 1.00379 0.98087 0.96987 1.22832 0.95372 0.88924 0.91551 0.93514 1.20660 0.98544 1.00100 0.91710 1.19840 0.97478 0.93806 0.95457 1.20963 0.98863 0.97782 0.96695 1.20970 1.00601 0.99020 0.94088 1.21013 1.00247 0.94679 0.99159 1.21117 0.98097 0.97326 0.97215 1.21130 0.98781 0.97977 0.92494 1.89287 1.85799 1.15107 1.35222 0.89251 0.94822 0.97304 0.93172 0.93162 0.91735 0.91537 0.92486 0.90495 0.91108 0.86774 0.86869 0.86901 0.86573 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 8.38 37.15 0.31 -3.38 16 2 C 0.23 5.70 0.74 -91.20 -0.07 5.64 16 3 C -0.52 -14.45 8.26 -34.44 -0.28 -14.73 16 4 H 0.06 1.62 7.34 -52.48 -0.39 1.23 16 5 C 0.08 2.23 5.26 -17.82 -0.09 2.14 16 6 N -0.86 -24.62 10.94 55.43 0.61 -24.02 16 7 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 C -0.14 -3.00 6.27 -25.11 -0.16 -3.16 16 12 C -0.15 -2.72 6.60 -24.63 -0.16 -2.88 16 13 C 0.07 1.45 3.23 -25.67 -0.08 1.37 16 14 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 15 C -0.07 -1.24 5.11 -27.88 -0.14 -1.38 16 16 C -0.07 -1.16 5.03 -104.62 -0.53 -1.68 16 17 C -0.12 -1.95 9.70 -39.58 -0.38 -2.33 16 18 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 19 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 20 C -0.12 -1.98 10.05 -39.58 -0.40 -2.38 16 21 C -0.09 -1.59 9.59 -39.58 -0.38 -1.97 16 22 O -0.33 -8.48 9.83 -35.23 -0.35 -8.82 16 23 H 0.09 2.48 6.06 -51.93 -0.31 2.16 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.01 0.19 8.13 -51.93 -0.42 -0.24 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 28 H 0.06 1.36 7.41 -51.93 -0.38 0.98 16 29 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 32 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -29.78 303.83 -9.03 -38.81 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.68 Total: 2.63 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -3.16 Total: -29.42 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.61 Total: -24.02 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.35 Total: -8.82 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.78 -9.03 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390643056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.353 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds