Wall clock time and date at job start Mon Mar 30 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38255 * 120.00402 * 2 1 4 4 C 1.38208 * 120.00061 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00039 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47983 * 159.97299 * 7 6 5 9 9 C 1.53091 * 109.48199 * 279.99400 * 7 6 5 10 10 C 1.53179 * 109.16337 * 177.58662 * 9 7 6 11 11 C 1.53171 * 109.03906 * 303.02247 * 10 9 7 12 12 C 1.53098 * 109.16416 * 56.98224 * 11 10 9 13 13 H 1.08990 * 109.47711 * 182.39592 * 12 11 10 14 14 C 1.50699 * 109.47942 * 62.37096 * 12 11 10 15 15 H 1.08002 * 120.00516 * 359.97438 * 14 12 11 16 16 C 1.37884 * 119.99783 * 180.02562 * 14 12 11 17 17 N 1.31514 * 119.99707 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99956 * 180.27458 * 16 14 12 19 19 H 1.48497 * 109.47172 * 179.72730 * 18 16 14 20 20 H 1.48506 * 109.47132 * 299.72429 * 18 16 14 21 21 H 1.48501 * 109.47173 * 59.72550 * 18 16 14 22 22 O 1.42899 * 109.40975 * 302.38976 * 12 11 10 23 23 C 1.38220 * 119.99508 * 180.17053 * 2 1 3 24 24 H 1.08996 * 109.47274 * 89.99422 * 1 2 3 25 25 H 1.09001 * 109.47158 * 210.00203 * 1 2 3 26 26 H 1.09004 * 109.46450 * 329.99670 * 1 2 3 27 27 H 1.08001 * 119.99407 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.00180 * 179.97438 * 4 3 2 29 29 H 1.08004 * 120.00068 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.51994 * 57.68865 * 9 7 6 31 31 H 1.08990 * 109.52525 * 297.50116 * 9 7 6 32 32 H 1.09002 * 109.54179 * 183.14855 * 10 9 7 33 33 H 1.09000 * 109.61130 * 62.93992 * 10 9 7 34 34 H 1.08998 * 109.52291 * 297.07038 * 11 10 9 35 35 H 1.09007 * 109.57313 * 176.91380 * 11 10 9 36 36 H 0.97005 * 119.99656 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00147 * 0.05985 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 3.5806 -1.1971 0.0027 7 6 4.3340 -2.5022 0.0044 8 1 3.6795 -3.2993 0.3570 9 6 4.8068 -2.8208 -1.4164 10 6 5.6227 -4.1170 -1.3961 11 6 6.7899 -3.9574 -0.4172 12 6 6.2406 -3.5950 0.9652 13 1 7.0690 -3.4385 1.6559 14 6 5.3703 -4.7170 1.4700 15 1 5.2231 -5.6000 0.8659 16 6 4.7612 -4.6158 2.7029 17 7 4.9393 -3.5398 3.4379 18 14 3.6887 -6.0098 3.3320 19 1 3.1598 -5.6601 4.6748 20 1 2.5570 -6.2253 2.3950 21 1 4.4967 -7.2521 3.4264 22 8 5.4666 -2.3976 0.8696 23 6 2.1980 -1.1971 -0.0036 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3632 0.8900 0.5139 27 1 1.6584 2.1326 0.0004 28 1 4.1206 2.1324 0.0001 29 1 5.3518 -0.0002 0.0016 30 1 5.4285 -2.0048 -1.7849 31 1 3.9425 -2.9445 -2.0687 32 1 6.0095 -4.3201 -2.3948 33 1 4.9885 -4.9435 -1.0758 34 1 7.4517 -3.1644 -0.7655 35 1 7.3447 -4.8936 -0.3546 36 1 4.5105 -3.4685 4.3051 37 1 1.6580 -2.1324 -0.0073 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393741911.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:47 Heat of formation + Delta-G solvation = -41.741977 kcal Electronic energy + Delta-G solvation = -18217.830942 eV Core-core repulsion = 15538.048254 eV Total energy + Delta-G solvation = -2679.782688 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.23620 -37.71526 -33.09137 -32.45821 -32.03562 -31.32690 -28.79428 -26.50249 -25.58642 -23.56661 -22.21562 -21.50966 -20.02857 -18.82788 -16.32728 -16.12877 -15.06347 -14.98665 -14.60274 -14.05842 -13.85196 -13.55540 -13.42539 -13.11335 -12.66445 -12.63081 -12.02232 -11.94725 -11.76951 -11.44717 -11.21642 -10.90940 -10.76001 -10.64925 -10.59570 -10.28087 -10.16330 -9.68354 -9.57559 -8.75397 -8.46183 -8.31422 -8.12671 -7.68753 -5.97342 -4.12854 1.86141 1.86743 3.29189 3.35418 3.36704 4.23020 4.40981 4.98589 5.17974 5.29213 5.37780 5.55422 5.58331 5.68534 5.74140 5.78945 5.87693 5.92394 6.00256 6.06221 6.22087 6.26538 6.41056 6.47445 6.53114 6.55079 6.70943 6.87614 6.90820 6.97144 7.05444 7.05835 7.08800 7.34692 7.52123 7.71183 7.88529 8.23047 8.83467 9.09448 9.59242 11.06755 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.008494 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.206095 B = 3295.546781 C = 3992.199757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.134 4.134 4 C -0.125 4.125 5 C -0.098 4.098 6 C -0.050 4.050 7 C 0.141 3.859 8 H 0.070 0.930 9 C -0.136 4.136 10 C -0.108 4.108 11 C -0.142 4.142 12 C 0.212 3.788 13 H 0.061 0.939 14 C -0.560 4.560 15 H 0.056 0.944 16 C 0.080 3.920 17 N -0.856 5.856 18 Si 0.881 3.119 19 H -0.287 1.287 20 H -0.276 1.276 21 H -0.276 1.276 22 O -0.365 6.365 23 C -0.114 4.114 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.260 0.740 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 5.921 -7.901 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.152 4.152 4 C -0.143 4.143 5 C -0.116 4.116 6 C -0.050 4.050 7 C 0.082 3.918 8 H 0.088 0.912 9 C -0.174 4.174 10 C -0.146 4.146 11 C -0.180 4.180 12 C 0.156 3.844 13 H 0.079 0.921 14 C -0.598 4.598 15 H 0.074 0.926 16 C -0.126 4.126 17 N -0.492 5.492 18 Si 0.709 3.291 19 H -0.212 1.212 20 H -0.202 1.202 21 H -0.202 1.202 22 O -0.284 6.284 23 C -0.132 4.132 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.798 6.186 -7.619 10.924 hybrid contribution -0.645 -1.039 0.360 1.275 sum -5.443 5.147 -7.259 10.431 Atomic orbital electron populations 1.20731 0.91780 1.02382 1.01708 1.19769 0.95554 0.93220 1.01098 1.20853 0.94275 0.96917 1.03146 1.21072 0.94172 0.97822 1.01212 1.21022 1.00363 0.91581 0.98621 1.19987 0.93140 0.95497 0.96388 1.20376 0.90063 0.92321 0.88990 0.91183 1.22109 0.99316 0.98053 0.97909 1.21442 0.97891 0.97699 0.97553 1.22184 0.96904 0.99898 0.99010 1.19710 0.91141 0.83794 0.89722 0.92135 1.21491 1.31708 1.03692 1.02880 0.92564 1.25026 0.96034 0.95049 0.96518 1.70046 1.41777 1.26292 1.11077 0.86848 0.81087 0.82997 0.78191 1.21223 1.20200 1.20154 1.87931 1.38203 1.37474 1.64766 1.20865 0.93653 0.97345 1.01333 0.91712 0.91756 0.92006 0.86954 0.86706 0.85831 0.92629 0.92812 0.94050 0.91308 0.94083 0.92577 0.92975 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 36.01 0.36 -0.97 16 2 C -0.10 -1.52 5.88 -104.62 -0.62 -2.13 16 3 C -0.13 -2.02 9.70 -39.59 -0.38 -2.40 16 4 C -0.12 -2.00 10.05 -39.59 -0.40 -2.39 16 5 C -0.10 -1.83 9.36 -39.58 -0.37 -2.20 16 6 C -0.05 -1.01 4.97 -104.62 -0.52 -1.53 16 7 C 0.14 3.12 2.58 -27.84 -0.07 3.04 16 8 H 0.07 1.72 6.95 -51.93 -0.36 1.36 16 9 C -0.14 -2.58 5.40 -26.59 -0.14 -2.73 16 10 C -0.11 -2.08 5.77 -26.55 -0.15 -2.23 16 11 C -0.14 -2.97 5.59 -26.59 -0.15 -3.12 16 12 C 0.21 5.35 3.16 -27.83 -0.09 5.27 16 13 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 14 C -0.56 -15.02 6.59 -34.44 -0.23 -15.25 16 15 H 0.06 1.48 6.87 -52.49 -0.36 1.12 16 16 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 17 N -0.86 -24.99 12.84 55.43 0.71 -24.27 16 18 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 O -0.36 -9.25 8.96 -35.23 -0.32 -9.57 16 23 C -0.11 -2.07 9.33 -39.58 -0.37 -2.44 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 26 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.12 2.34 7.78 -52.48 -0.41 1.93 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.39 6.85 -51.93 -0.36 1.04 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.12 2.02 8.04 -52.49 -0.42 1.60 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -29.30 300.53 -9.01 -38.31 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.69 Total: 1.90 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -3.22 Total: -26.97 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.71 Total: -24.27 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.32 Total: -9.57 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.30 -9.01 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393741911.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.433 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds