Wall clock time and date at job start Mon Mar 30 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38255 * 120.00402 * 2 1 4 4 C 1.38208 * 120.00061 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00039 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47983 * 159.97299 * 7 6 5 9 9 C 1.53091 * 109.48199 * 279.99400 * 7 6 5 10 10 C 1.53179 * 109.16337 * 177.58662 * 9 7 6 11 11 C 1.53171 * 109.03906 * 303.02247 * 10 9 7 12 12 C 1.53098 * 109.16416 * 56.98224 * 11 10 9 13 13 H 1.08990 * 109.47711 * 182.39592 * 12 11 10 14 14 C 1.50699 * 109.47942 * 62.37096 * 12 11 10 15 15 H 1.08002 * 120.00516 * 359.97438 * 14 12 11 16 16 C 1.37884 * 119.99783 * 180.02562 * 14 12 11 17 17 N 1.31514 * 119.99707 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99956 * 180.27458 * 16 14 12 19 19 H 1.48497 * 109.47172 * 179.72730 * 18 16 14 20 20 H 1.48506 * 109.47132 * 299.72429 * 18 16 14 21 21 H 1.48501 * 109.47173 * 59.72550 * 18 16 14 22 22 O 1.42899 * 109.40975 * 302.38976 * 12 11 10 23 23 C 1.38220 * 119.99508 * 180.17053 * 2 1 3 24 24 H 1.08996 * 109.47274 * 89.99422 * 1 2 3 25 25 H 1.09001 * 109.47158 * 210.00203 * 1 2 3 26 26 H 1.09004 * 109.46450 * 329.99670 * 1 2 3 27 27 H 1.08001 * 119.99407 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.00180 * 179.97438 * 4 3 2 29 29 H 1.08004 * 120.00068 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.51994 * 57.68865 * 9 7 6 31 31 H 1.08990 * 109.52525 * 297.50116 * 9 7 6 32 32 H 1.09002 * 109.54179 * 183.14855 * 10 9 7 33 33 H 1.09000 * 109.61130 * 62.93992 * 10 9 7 34 34 H 1.08998 * 109.52291 * 297.07038 * 11 10 9 35 35 H 1.09007 * 109.57313 * 176.91380 * 11 10 9 36 36 H 0.97005 * 119.99656 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00147 * 0.05985 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 3.5806 -1.1971 0.0027 7 6 4.3340 -2.5022 0.0044 8 1 3.6795 -3.2993 0.3570 9 6 4.8068 -2.8208 -1.4164 10 6 5.6227 -4.1170 -1.3961 11 6 6.7899 -3.9574 -0.4172 12 6 6.2406 -3.5950 0.9652 13 1 7.0690 -3.4385 1.6559 14 6 5.3703 -4.7170 1.4700 15 1 5.2231 -5.6000 0.8659 16 6 4.7612 -4.6158 2.7029 17 7 4.9393 -3.5398 3.4379 18 14 3.6887 -6.0098 3.3320 19 1 3.1598 -5.6601 4.6748 20 1 2.5570 -6.2253 2.3950 21 1 4.4967 -7.2521 3.4264 22 8 5.4666 -2.3976 0.8696 23 6 2.1980 -1.1971 -0.0036 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3632 0.8900 0.5139 27 1 1.6584 2.1326 0.0004 28 1 4.1206 2.1324 0.0001 29 1 5.3518 -0.0002 0.0016 30 1 5.4285 -2.0048 -1.7849 31 1 3.9425 -2.9445 -2.0687 32 1 6.0095 -4.3201 -2.3948 33 1 4.9885 -4.9435 -1.0758 34 1 7.4517 -3.1644 -0.7655 35 1 7.3447 -4.8936 -0.3546 36 1 4.5105 -3.4685 4.3051 37 1 1.6580 -2.1324 -0.0073 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393741911.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:46 Heat of formation + Delta-G solvation = -56.886394 kcal Electronic energy + Delta-G solvation = -18218.487653 eV Core-core repulsion = 15538.048254 eV Total energy + Delta-G solvation = -2680.439399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71987 -39.32763 -34.85519 -34.13520 -33.70479 -32.78661 -30.41211 -27.65974 -27.54028 -25.20091 -23.96831 -22.84430 -21.49949 -20.59505 -18.29065 -17.52611 -16.78242 -16.55178 -16.37917 -15.59905 -15.41627 -15.22354 -14.76871 -14.61029 -14.25420 -13.90541 -13.65074 -13.42811 -13.05464 -12.96969 -12.79655 -12.71285 -12.51864 -12.37066 -12.02766 -11.87414 -11.79132 -11.49039 -11.23913 -10.71773 -10.48054 -9.83246 -9.54968 -9.31447 -8.09186 -6.30433 0.52527 0.55110 1.37514 1.38209 1.45946 2.39032 2.88660 3.13143 3.52234 4.00026 4.06621 4.11324 4.21142 4.26539 4.32565 4.45130 4.54075 4.56678 4.66904 4.78326 4.87174 4.87501 4.94587 4.98602 5.08021 5.19912 5.22031 5.26034 5.35882 5.39026 5.48581 5.59867 5.67480 5.72256 5.80390 5.90924 6.16617 6.21956 6.76303 7.15336 7.46707 8.94812 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.008494 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.206095 B = 3295.546781 C = 3992.199757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.079 4.079 7 C 0.142 3.858 8 H 0.034 0.966 9 C -0.128 4.128 10 C -0.105 4.105 11 C -0.135 4.135 12 C 0.204 3.796 13 H 0.025 0.975 14 C -0.563 4.563 15 H 0.058 0.942 16 C 0.029 3.971 17 N -0.895 5.895 18 Si 0.943 3.057 19 H -0.286 1.286 20 H -0.270 1.270 21 H -0.267 1.267 22 O -0.387 6.387 23 C -0.134 4.134 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.258 0.742 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.417 6.729 -9.330 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.079 4.079 7 C 0.084 3.916 8 H 0.052 0.948 9 C -0.166 4.166 10 C -0.142 4.142 11 C -0.173 4.173 12 C 0.148 3.852 13 H 0.043 0.957 14 C -0.600 4.600 15 H 0.076 0.924 16 C -0.173 4.173 17 N -0.533 5.533 18 Si 0.768 3.232 19 H -0.212 1.212 20 H -0.195 1.195 21 H -0.192 1.192 22 O -0.307 6.307 23 C -0.152 4.152 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.168 0.832 28 H 0.162 0.838 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.397 6.978 -9.065 13.107 hybrid contribution -0.160 -1.211 0.788 1.454 sum -6.557 5.767 -8.277 12.032 Atomic orbital electron populations 1.20802 0.88986 1.03363 1.03256 1.20215 0.97627 0.92478 0.99169 1.21314 0.94005 0.98194 1.01201 1.21408 0.94998 0.97798 0.99690 1.21031 0.99949 0.92463 1.00415 1.19975 0.94051 0.94968 0.98908 1.20399 0.88507 0.92752 0.89949 0.94770 1.22040 1.00158 0.98196 0.96222 1.21429 0.96877 0.97171 0.98731 1.22061 0.97794 1.00531 0.96909 1.19635 0.90272 0.83606 0.91648 0.95732 1.21779 1.31363 1.04012 1.02884 0.92369 1.25787 0.97419 0.97261 0.96879 1.70196 1.43269 1.28410 1.11375 0.85854 0.79554 0.80248 0.77496 1.21209 1.19470 1.19165 1.87856 1.39376 1.37193 1.66297 1.20995 0.93066 0.98616 1.02547 0.89750 0.91939 0.89908 0.83159 0.83804 0.87166 0.91846 0.90799 0.90478 0.92764 0.92834 0.91902 0.93335 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 10.01 71.24 0.71 -1.56 16 2 C -0.09 -2.78 5.88 -19.86 -0.12 -2.90 16 3 C -0.13 -3.49 9.70 22.27 0.22 -3.27 16 4 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 5 C -0.12 -4.54 9.36 22.27 0.21 -4.33 16 6 C -0.08 -3.23 4.97 -19.87 -0.10 -3.33 16 7 C 0.14 6.47 2.58 29.88 0.08 6.55 16 8 H 0.03 1.77 6.95 -2.39 -0.02 1.75 16 9 C -0.13 -4.82 5.40 30.68 0.17 -4.65 16 10 C -0.10 -3.90 5.77 30.71 0.18 -3.72 16 11 C -0.14 -5.65 5.59 30.68 0.17 -5.48 16 12 C 0.20 10.73 3.16 29.88 0.09 10.82 16 13 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 14 C -0.56 -31.05 6.59 25.60 0.17 -30.88 16 15 H 0.06 3.11 6.87 -2.91 -0.02 3.09 16 16 C 0.03 1.64 5.40 84.66 0.46 2.09 16 17 N -0.90 -54.30 12.84 21.45 0.28 -54.02 16 18 Si 0.94 44.11 29.54 68.60 2.03 46.13 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 O -0.39 -20.54 8.96 -148.98 -1.33 -21.87 16 23 C -0.13 -4.86 9.33 22.27 0.21 -4.65 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 26 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 27 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 28 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 29 H 0.11 4.32 7.78 -2.91 -0.02 4.29 16 30 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 2.17 6.85 -2.39 -0.02 2.15 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 37 H 0.11 4.05 8.04 -2.91 -0.02 4.02 16 Total: -1.00 -65.55 300.53 4.66 -60.89 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.03 Total: 17.61 kcal Atomic # 6 Polarization: -51.39 SS G_CDS: 2.67 Total: -48.73 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.28 Total: -54.02 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -1.33 Total: -21.87 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -65.55 4.66 -60.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393741911.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.999 kcal (2) G-P(sol) polarization free energy of solvation -65.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds