Wall clock time and date at job start Mon Mar 30 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38249 * 120.00251 * 2 1 4 4 C 1.38213 * 120.00037 * 179.72552 * 3 2 1 5 5 C 1.38259 * 119.99686 * 0.50388 * 4 3 2 6 6 C 1.50707 * 119.99781 * 179.76849 * 5 4 3 7 7 H 1.09002 * 110.33250 * 144.02438 * 6 5 4 8 8 C 1.54481 * 110.46687 * 266.33928 * 6 5 4 9 9 C 1.54506 * 104.06328 * 142.85817 * 8 6 5 10 10 C 1.54477 * 104.06393 * 359.97438 * 9 8 6 11 11 H 1.08998 * 110.46437 * 94.90072 * 10 9 8 12 12 C 1.50704 * 110.37285 * 217.19194 * 10 9 8 13 13 H 1.08000 * 119.99550 * 356.83023 * 12 10 9 14 14 C 1.37870 * 120.00026 * 176.83589 * 12 10 9 15 15 N 1.31513 * 120.00068 * 180.02562 * 14 12 10 16 16 Si 1.86800 * 120.00046 * 359.97438 * 14 12 10 17 17 H 1.48501 * 109.46953 * 90.00455 * 16 14 12 18 18 H 1.48506 * 109.47508 * 209.99933 * 16 14 12 19 19 H 1.48501 * 109.47305 * 330.00331 * 16 14 12 20 20 O 1.44423 * 104.80156 * 336.01945 * 10 9 8 21 21 C 1.38209 * 120.00293 * 359.49023 * 5 4 3 22 22 C 1.50703 * 120.00175 * 180.27421 * 21 5 4 23 23 C 1.38219 * 119.99598 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47487 * 270.02668 * 1 2 3 25 25 H 1.09006 * 109.47169 * 30.02670 * 1 2 3 26 26 H 1.09001 * 109.47454 * 150.02132 * 1 2 3 27 27 H 1.08002 * 120.00194 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.00253 * 180.27153 * 4 3 2 29 29 H 1.08996 * 110.51209 * 261.50444 * 8 6 5 30 30 H 1.09006 * 110.50965 * 24.21157 * 8 6 5 31 31 H 1.09006 * 110.50783 * 241.35215 * 9 8 6 32 32 H 1.09001 * 110.62960 * 118.70518 * 9 8 6 33 33 H 0.97004 * 120.00243 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.46882 * 90.00775 * 22 21 5 35 35 H 1.09002 * 109.46933 * 210.00744 * 22 21 5 36 36 H 1.08996 * 109.46842 * 330.00192 * 22 21 5 37 37 H 1.08001 * 120.00202 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0057 5 6 4.2716 -0.0002 0.0009 6 6 5.7787 -0.0002 0.0019 7 1 6.1570 -0.8300 0.5990 8 6 6.3198 -0.0863 -1.4425 9 6 7.5704 0.8209 -1.4296 10 6 7.6366 1.3483 0.0209 11 1 8.3001 0.7270 0.6224 12 6 8.1032 2.7812 0.0373 13 1 8.3841 3.2681 -0.8849 14 6 8.1716 3.4703 1.2294 15 7 8.5783 4.7209 1.2437 16 14 7.6851 2.6282 2.8243 17 1 8.8765 1.9726 3.4212 18 1 7.1479 3.6366 3.7728 19 1 6.6445 1.6058 2.5468 20 8 6.2807 1.2556 0.5094 21 6 3.5805 -1.1971 0.0011 22 6 4.3340 -2.5023 0.0021 23 6 2.1980 -1.1971 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5143 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1325 0.0102 29 1 6.5947 -1.1124 -1.6868 30 1 5.5814 0.2910 -2.1500 31 1 7.4503 1.6467 -2.1309 32 1 8.4648 0.2454 -1.6683 33 1 8.6261 5.2059 2.0824 34 1 4.5149 -2.8165 1.0300 35 1 3.7452 -3.2621 -0.5119 36 1 5.2867 -2.3721 -0.5112 37 1 1.6579 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393745673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:33 Heat of formation + Delta-G solvation = -34.427342 kcal Electronic energy + Delta-G solvation = -17938.818293 eV Core-core repulsion = 15259.352791 eV Total energy + Delta-G solvation = -2679.465501 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.73281 -37.96311 -33.80330 -32.53018 -31.74362 -31.08033 -29.23371 -27.11601 -26.45468 -23.99525 -22.06512 -21.20966 -20.10261 -19.53927 -17.10337 -15.95345 -15.81197 -15.15928 -14.55763 -14.25082 -13.94195 -13.80947 -13.29570 -13.18546 -12.99249 -12.75471 -12.60200 -12.42261 -11.96580 -11.88587 -11.69360 -11.10737 -10.99868 -10.80089 -10.67185 -10.44070 -10.06680 -9.86463 -9.66690 -9.39013 -8.55851 -8.48629 -8.42964 -8.06355 -6.10239 -4.18583 1.56441 1.68546 3.39105 3.46066 3.71187 3.95759 4.54229 4.73355 4.89924 5.03660 5.19664 5.23151 5.35301 5.40057 5.45210 5.51489 5.56913 5.61077 5.67037 5.72149 5.84309 5.92469 5.96680 6.09723 6.16374 6.21105 6.36703 6.42821 6.48250 6.62860 6.66523 6.75094 6.85935 7.02279 7.17094 7.31752 7.60798 8.14228 8.44694 8.90760 9.53577 11.00228 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025880 B = 0.007072 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.660910 B = 3958.291876 C = 4389.723780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.130 4.130 4 C -0.084 4.084 5 C -0.074 4.074 6 C 0.102 3.898 7 H 0.062 0.938 8 C -0.141 4.141 9 C -0.135 4.135 10 C 0.168 3.832 11 H 0.025 0.975 12 C -0.519 4.519 13 H 0.079 0.921 14 C 0.084 3.916 15 N -0.892 5.892 16 Si 0.866 3.134 17 H -0.285 1.285 18 H -0.292 1.292 19 H -0.222 1.222 20 O -0.362 6.362 21 C -0.083 4.083 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.265 0.735 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.298 -13.011 -2.843 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.102 4.102 5 C -0.074 4.074 6 C 0.043 3.957 7 H 0.080 0.920 8 C -0.179 4.179 9 C -0.173 4.173 10 C 0.112 3.888 11 H 0.043 0.957 12 C -0.556 4.556 13 H 0.097 0.903 14 C -0.120 4.120 15 N -0.530 5.530 16 Si 0.692 3.308 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.145 1.145 20 O -0.283 6.283 21 C -0.083 4.083 22 C -0.173 4.173 23 C -0.145 4.145 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.154 0.846 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.378 -12.706 -2.616 17.931 hybrid contribution -0.060 -0.310 0.776 0.838 sum -12.439 -13.016 -1.840 18.098 Atomic orbital electron populations 1.20738 0.91677 1.02302 1.01922 1.19828 0.95633 0.93316 1.00767 1.21035 0.94322 0.97234 1.02201 1.21204 0.93516 0.99004 0.96464 1.19726 0.94936 0.92731 1.00029 1.21624 0.89506 0.90673 0.93864 0.92037 1.22908 0.98484 0.99602 0.96893 1.22860 0.95693 0.98332 1.00400 1.20968 0.80799 0.97785 0.89218 0.95744 1.20956 1.44013 0.95014 0.95606 0.90299 1.25036 0.92767 0.94535 0.99689 1.69921 1.45871 1.09765 1.27404 0.87054 0.80312 0.81151 0.82241 1.21141 1.21788 1.14522 1.89558 1.30467 1.35047 1.73201 1.19641 0.93575 0.94637 1.00423 1.20830 1.00231 0.94011 1.02213 1.20722 0.93192 0.97183 1.03441 0.91569 0.91786 0.91972 0.86401 0.84556 0.91924 0.91506 0.91063 0.92273 0.92527 0.91343 0.91854 0.91190 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 36.00 0.36 -0.74 16 2 C -0.10 -1.29 5.88 -104.63 -0.62 -1.91 16 3 C -0.13 -1.98 9.70 -39.59 -0.38 -2.37 16 4 C -0.08 -1.51 9.38 -39.58 -0.37 -1.89 16 5 C -0.07 -1.31 5.00 -104.62 -0.52 -1.83 16 6 C 0.10 1.93 2.70 -27.10 -0.07 1.86 16 7 H 0.06 1.11 7.08 -51.93 -0.37 0.74 16 8 C -0.14 -2.43 6.29 -25.16 -0.16 -2.59 16 9 C -0.13 -2.69 6.62 -25.17 -0.17 -2.86 16 10 C 0.17 4.04 2.52 -27.11 -0.07 3.97 16 11 H 0.02 0.59 7.64 -51.93 -0.40 0.20 16 12 C -0.52 -14.83 9.36 -34.44 -0.32 -15.15 16 13 H 0.08 2.40 7.84 -52.49 -0.41 1.99 16 14 C 0.08 2.47 5.47 -17.82 -0.10 2.38 16 15 N -0.89 -27.58 13.96 55.43 0.77 -26.81 16 16 Si 0.87 22.19 27.08 -169.99 -4.60 17.59 16 17 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 19 H -0.22 -5.59 5.37 56.52 0.30 -5.29 16 20 O -0.36 -8.58 6.86 -35.23 -0.24 -8.82 16 21 C -0.08 -1.23 5.88 -104.62 -0.62 -1.85 16 22 C -0.12 -1.39 9.24 36.01 0.33 -1.06 16 23 C -0.13 -1.72 9.36 -39.58 -0.37 -2.09 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 28 H 0.14 2.72 7.31 -52.49 -0.38 2.34 16 29 H 0.06 0.90 7.48 -51.93 -0.39 0.51 16 30 H 0.07 1.14 7.87 -51.93 -0.41 0.73 16 31 H 0.07 1.48 7.72 -51.93 -0.40 1.08 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.07 0.84 5.87 -51.93 -0.30 0.53 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 296.81 15.07 4.47 4.47 Total: -1.00 -31.36 296.81 -8.34 -39.70 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.67 Total: 0.00 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -3.07 Total: -26.12 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.77 Total: -26.81 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.24 Total: -8.82 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.60 Total: 17.59 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.36 -8.34 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393745673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.269 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds