Wall clock time and date at job start Mon Mar 30 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38249 * 120.00251 * 2 1 4 4 C 1.38213 * 120.00037 * 179.72552 * 3 2 1 5 5 C 1.38259 * 119.99686 * 0.50388 * 4 3 2 6 6 C 1.50707 * 119.99781 * 179.76849 * 5 4 3 7 7 H 1.09002 * 110.33250 * 144.02438 * 6 5 4 8 8 C 1.54481 * 110.46687 * 266.33928 * 6 5 4 9 9 C 1.54506 * 104.06328 * 142.85817 * 8 6 5 10 10 C 1.54477 * 104.06393 * 359.97438 * 9 8 6 11 11 H 1.08998 * 110.46437 * 94.90072 * 10 9 8 12 12 C 1.50704 * 110.37285 * 217.19194 * 10 9 8 13 13 H 1.08000 * 119.99550 * 356.83023 * 12 10 9 14 14 C 1.37870 * 120.00026 * 176.83589 * 12 10 9 15 15 N 1.31513 * 120.00068 * 180.02562 * 14 12 10 16 16 Si 1.86800 * 120.00046 * 359.97438 * 14 12 10 17 17 H 1.48501 * 109.46953 * 90.00455 * 16 14 12 18 18 H 1.48506 * 109.47508 * 209.99933 * 16 14 12 19 19 H 1.48501 * 109.47305 * 330.00331 * 16 14 12 20 20 O 1.44423 * 104.80156 * 336.01945 * 10 9 8 21 21 C 1.38209 * 120.00293 * 359.49023 * 5 4 3 22 22 C 1.50703 * 120.00175 * 180.27421 * 21 5 4 23 23 C 1.38219 * 119.99598 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47487 * 270.02668 * 1 2 3 25 25 H 1.09006 * 109.47169 * 30.02670 * 1 2 3 26 26 H 1.09001 * 109.47454 * 150.02132 * 1 2 3 27 27 H 1.08002 * 120.00194 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.00253 * 180.27153 * 4 3 2 29 29 H 1.08996 * 110.51209 * 261.50444 * 8 6 5 30 30 H 1.09006 * 110.50965 * 24.21157 * 8 6 5 31 31 H 1.09006 * 110.50783 * 241.35215 * 9 8 6 32 32 H 1.09001 * 110.62960 * 118.70518 * 9 8 6 33 33 H 0.97004 * 120.00243 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.46882 * 90.00775 * 22 21 5 35 35 H 1.09002 * 109.46933 * 210.00744 * 22 21 5 36 36 H 1.08996 * 109.46842 * 330.00192 * 22 21 5 37 37 H 1.08001 * 120.00202 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0057 5 6 4.2716 -0.0002 0.0009 6 6 5.7787 -0.0002 0.0019 7 1 6.1570 -0.8300 0.5990 8 6 6.3198 -0.0863 -1.4425 9 6 7.5704 0.8209 -1.4296 10 6 7.6366 1.3483 0.0209 11 1 8.3001 0.7270 0.6224 12 6 8.1032 2.7812 0.0373 13 1 8.3841 3.2681 -0.8849 14 6 8.1716 3.4703 1.2294 15 7 8.5783 4.7209 1.2437 16 14 7.6851 2.6282 2.8243 17 1 8.8765 1.9726 3.4212 18 1 7.1479 3.6366 3.7728 19 1 6.6445 1.6058 2.5468 20 8 6.2807 1.2556 0.5094 21 6 3.5805 -1.1971 0.0011 22 6 4.3340 -2.5023 0.0021 23 6 2.1980 -1.1971 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5143 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1325 0.0102 29 1 6.5947 -1.1124 -1.6868 30 1 5.5814 0.2910 -2.1500 31 1 7.4503 1.6467 -2.1309 32 1 8.4648 0.2454 -1.6683 33 1 8.6261 5.2059 2.0824 34 1 4.5149 -2.8165 1.0300 35 1 3.7452 -3.2621 -0.5119 36 1 5.2867 -2.3721 -0.5112 37 1 1.6579 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393745673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:32 Heat of formation + Delta-G solvation = -52.237677 kcal Electronic energy + Delta-G solvation = -17939.590607 eV Core-core repulsion = 15259.352791 eV Total energy + Delta-G solvation = -2680.237815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03348 -39.46052 -35.14923 -34.46405 -32.98740 -32.66811 -30.81060 -28.21771 -27.79858 -25.57884 -23.48618 -22.50597 -21.77286 -20.78610 -19.19143 -17.42416 -17.25477 -16.72744 -16.15964 -15.64762 -15.30296 -14.92505 -14.76082 -14.72243 -14.46532 -14.01691 -13.90243 -13.63669 -13.25060 -12.95874 -12.87405 -12.73193 -12.65813 -12.26625 -11.95156 -11.90118 -11.74888 -11.67216 -11.37615 -11.27268 -10.77711 -10.24113 -9.61330 -9.25183 -8.38015 -6.50178 0.41645 0.51868 1.32662 1.36814 1.65646 2.39429 2.76845 2.92383 3.48039 3.79462 3.93993 4.00557 4.04540 4.14018 4.15801 4.35019 4.43729 4.54206 4.56865 4.66672 4.78380 4.83302 4.86912 4.91169 4.95134 4.97996 5.02711 5.11159 5.21297 5.30434 5.37162 5.40624 5.51546 5.60402 5.72654 5.80322 6.17412 6.18527 6.37697 6.66258 7.25895 8.76314 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025880 B = 0.007072 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.660910 B = 3958.291876 C = 4389.723780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.114 4.114 5 C -0.100 4.100 6 C 0.097 3.903 7 H 0.076 0.924 8 C -0.127 4.127 9 C -0.133 4.133 10 C 0.165 3.835 11 H 0.031 0.969 12 C -0.528 4.528 13 H 0.041 0.959 14 C 0.028 3.972 15 N -0.940 5.940 16 Si 0.932 3.068 17 H -0.271 1.271 18 H -0.294 1.294 19 H -0.216 1.216 20 O -0.390 6.390 21 C -0.082 4.082 22 C -0.117 4.117 23 C -0.126 4.126 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.268 0.732 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.422 -16.742 -2.569 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.091 4.091 3 C -0.159 4.159 4 C -0.132 4.132 5 C -0.100 4.100 6 C 0.039 3.961 7 H 0.094 0.906 8 C -0.165 4.165 9 C -0.170 4.170 10 C 0.109 3.891 11 H 0.049 0.951 12 C -0.565 4.565 13 H 0.059 0.941 14 C -0.171 4.171 15 N -0.579 5.579 16 Si 0.756 3.244 17 H -0.197 1.197 18 H -0.221 1.221 19 H -0.138 1.138 20 O -0.310 6.310 21 C -0.082 4.082 22 C -0.173 4.173 23 C -0.143 4.143 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.146 0.854 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.503 -16.453 -2.358 22.059 hybrid contribution 0.523 0.850 0.606 1.167 sum -13.980 -15.604 -1.752 21.023 Atomic orbital electron populations 1.20808 0.88872 1.03724 1.03049 1.20264 0.97665 0.92562 0.98655 1.21194 0.93316 0.98888 1.02524 1.21059 0.94877 0.98014 0.99265 1.19727 0.94138 0.93741 1.02405 1.21875 0.90755 0.88774 0.94693 0.90596 1.22847 0.96673 1.01004 0.95948 1.22791 0.98441 0.98594 0.97219 1.20834 0.81263 0.94930 0.92047 0.95147 1.21263 1.43691 0.97415 0.94141 0.94072 1.25902 0.92879 0.95064 1.03290 1.70050 1.48045 1.11453 1.28360 0.86027 0.80403 0.80081 0.77889 1.19713 1.22084 1.13838 1.89457 1.29813 1.37962 1.73811 1.19971 0.94447 0.94710 0.99075 1.20909 1.00292 0.92966 1.03118 1.21167 0.92842 0.98516 1.01814 0.90422 0.91143 0.89885 0.85438 0.88298 0.88024 0.91740 0.93091 0.89763 0.92366 0.90532 0.89184 0.91246 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.01 71.23 0.71 -1.04 16 2 C -0.09 -2.22 5.88 -19.87 -0.12 -2.33 16 3 C -0.14 -4.22 9.70 22.27 0.22 -4.01 16 4 C -0.11 -4.19 9.38 22.27 0.21 -3.99 16 5 C -0.10 -3.42 5.00 -19.86 -0.10 -3.52 16 6 C 0.10 3.55 2.70 30.35 0.08 3.63 16 7 H 0.08 2.54 7.08 -2.39 -0.02 2.52 16 8 C -0.13 -4.14 6.29 31.61 0.20 -3.94 16 9 C -0.13 -5.24 6.62 31.61 0.21 -5.03 16 10 C 0.17 8.01 2.52 30.35 0.08 8.09 16 11 H 0.03 1.45 7.64 -2.39 -0.02 1.43 16 12 C -0.53 -31.47 9.36 25.60 0.24 -31.23 16 13 H 0.04 2.67 7.84 -2.91 -0.02 2.65 16 14 C 0.03 1.71 5.47 84.65 0.46 2.17 16 15 N -0.94 -60.56 13.96 21.44 0.30 -60.26 16 16 Si 0.93 47.09 27.08 68.60 1.86 48.95 16 17 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 19 H -0.22 -10.60 5.37 99.48 0.53 -10.07 16 20 O -0.39 -18.61 6.86 -148.98 -1.02 -19.63 16 21 C -0.08 -2.18 5.88 -19.87 -0.12 -2.30 16 22 C -0.12 -2.28 9.24 71.24 0.66 -1.62 16 23 C -0.13 -2.90 9.36 22.27 0.21 -2.69 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.07 8.09 -2.38 -0.02 1.05 16 26 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 27 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.10 4.27 7.31 -2.91 -0.02 4.25 16 29 H 0.10 2.53 7.48 -2.39 -0.02 2.51 16 30 H 0.06 2.13 7.87 -2.38 -0.02 2.11 16 31 H 0.05 2.18 7.72 -2.38 -0.02 2.16 16 32 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.27 16.14 8.31 -92.70 -0.77 15.36 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 36 H 0.07 1.37 5.87 -2.39 -0.01 1.35 16 37 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -71.40 296.81 4.94 -66.46 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.87 Total: 12.29 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 2.94 Total: -47.81 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.30 Total: -60.26 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -1.02 Total: -19.63 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.86 Total: 48.95 kcal Total: -71.40 4.94 -66.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393745673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.222 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds