Wall clock time and date at job start Mon Mar 30 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 120.00088 * 2 1 4 4 C 1.38216 * 119.99860 * 179.77503 * 3 2 1 5 5 C 1.38253 * 120.00029 * 0.51784 * 4 3 2 6 6 C 1.50696 * 120.00048 * 179.74664 * 5 4 3 7 7 H 1.09000 * 110.27973 * 214.09001 * 6 5 4 8 8 C 1.54953 * 110.39105 * 91.94565 * 6 5 4 9 9 C 1.55310 * 100.93963 * 204.59715 * 8 6 5 10 10 C 1.54381 * 102.25377 * 34.13484 * 9 8 6 11 11 H 1.08998 * 109.90670 * 98.19827 * 10 9 8 12 12 C 1.50701 * 109.82961 * 219.13113 * 10 9 8 13 13 H 1.08002 * 119.99761 * 359.58109 * 12 10 9 14 14 C 1.37871 * 119.99694 * 179.86672 * 12 10 9 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 10 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 10 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 O 1.43244 * 107.58837 * 338.64002 * 10 9 8 21 21 C 1.38214 * 120.00094 * 359.47905 * 5 4 3 22 22 C 1.50701 * 120.00279 * 180.27125 * 21 5 4 23 23 C 1.38210 * 119.99928 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.47138 * 269.98231 * 1 2 3 25 25 H 1.09002 * 109.47192 * 29.97927 * 1 2 3 26 26 H 1.08997 * 109.47346 * 149.98240 * 1 2 3 27 27 H 1.08006 * 119.99782 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.99942 * 180.27110 * 4 3 2 29 29 H 1.08992 * 111.12559 * 322.51458 * 8 6 5 30 30 H 1.08999 * 111.11856 * 86.67899 * 8 6 5 31 31 H 1.08998 * 110.84764 * 275.94296 * 9 8 6 32 32 H 1.08999 * 110.84595 * 152.32535 * 9 8 6 33 33 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.46760 * 89.99801 * 22 21 5 35 35 H 1.09001 * 109.46938 * 210.00160 * 22 21 5 36 36 H 1.08998 * 109.47037 * 329.99965 * 22 21 5 37 37 H 1.07998 * 119.99952 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0047 5 6 4.2717 0.0000 -0.0014 6 6 5.7787 0.0000 -0.0021 7 1 6.1562 -0.8440 -0.5794 8 6 6.3192 -0.0564 1.4490 9 6 7.7214 0.5858 1.2664 10 6 7.4613 1.6318 0.1611 11 1 7.3146 2.6151 0.6079 12 6 8.6295 1.6717 -0.7900 13 1 9.4801 1.0261 -0.6280 14 6 8.6150 2.5366 -1.8636 15 7 9.6370 2.5754 -2.6907 16 14 7.1440 3.6533 -2.1438 17 1 7.3546 4.9381 -1.4295 18 1 6.9905 3.9145 -3.5975 19 1 5.9173 2.9950 -1.6269 20 8 6.2771 1.2350 -0.5403 21 6 3.5807 -1.1970 -0.0014 22 6 4.3341 -2.5021 -0.0018 23 6 2.1980 -1.1969 -0.0005 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6583 2.1327 -0.0004 28 1 4.1205 2.1326 0.0091 29 1 5.7002 0.5366 2.1221 30 1 6.4009 -1.0858 1.7979 31 1 8.4478 -0.1563 0.9350 32 1 8.0502 1.0679 2.1871 33 1 9.6266 3.1836 -3.4462 34 1 4.5162 -2.8169 1.0258 35 1 3.7448 -3.2616 -0.5156 36 1 5.2863 -2.3717 -0.5160 37 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393745675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:34 Heat of formation + Delta-G solvation = -51.721641 kcal Electronic energy + Delta-G solvation = -17953.978694 eV Core-core repulsion = 15273.763255 eV Total energy + Delta-G solvation = -2680.215438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02711 -39.45878 -35.12494 -34.43367 -32.98264 -32.68408 -30.82022 -28.21075 -27.77267 -25.59679 -23.33932 -22.55400 -21.88952 -20.81604 -18.93712 -17.76697 -17.47252 -16.53601 -15.97800 -15.67588 -15.38555 -14.99206 -14.76582 -14.51154 -14.11441 -13.98715 -13.87678 -13.78239 -13.28124 -12.93219 -12.87925 -12.74293 -12.65422 -12.30308 -12.21905 -11.80709 -11.71888 -11.58461 -11.47837 -11.27374 -10.74587 -10.06401 -9.59253 -9.23491 -8.35585 -6.46922 0.43525 0.52633 1.33534 1.36629 1.66934 2.41503 2.78074 2.96254 3.43972 3.79294 3.90591 3.96532 4.03937 4.14066 4.21070 4.38586 4.40345 4.52393 4.64169 4.69294 4.79127 4.84693 4.88506 4.92016 4.94605 4.96877 5.04724 5.11036 5.19829 5.30385 5.39213 5.48383 5.56303 5.61241 5.73030 5.84107 6.15635 6.19123 6.50957 6.73408 7.30958 8.78911 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026673 B = 0.007191 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.491104 B = 3892.746778 C = 4488.109509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.092 4.092 3 C -0.139 4.139 4 C -0.113 4.113 5 C -0.103 4.103 6 C 0.105 3.895 7 H 0.063 0.937 8 C -0.127 4.127 9 C -0.131 4.131 10 C 0.166 3.834 11 H 0.036 0.964 12 C -0.538 4.538 13 H 0.039 0.961 14 C 0.027 3.973 15 N -0.942 5.942 16 Si 0.933 3.067 17 H -0.275 1.275 18 H -0.295 1.295 19 H -0.213 1.213 20 O -0.394 6.394 21 C -0.084 4.084 22 C -0.117 4.117 23 C -0.126 4.126 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.133 0.867 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.266 0.734 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.757 -8.114 8.726 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.092 4.092 3 C -0.157 4.157 4 C -0.131 4.131 5 C -0.103 4.103 6 C 0.048 3.952 7 H 0.081 0.919 8 C -0.164 4.164 9 C -0.168 4.168 10 C 0.110 3.890 11 H 0.053 0.947 12 C -0.576 4.576 13 H 0.058 0.942 14 C -0.172 4.172 15 N -0.582 5.582 16 Si 0.757 3.243 17 H -0.201 1.201 18 H -0.222 1.222 19 H -0.136 1.136 20 O -0.315 6.315 21 C -0.084 4.084 22 C -0.174 4.174 23 C -0.144 4.144 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.150 0.850 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.780 -7.936 8.428 22.061 hybrid contribution 0.561 0.842 -0.594 1.174 sum -18.218 -7.094 7.834 21.062 Atomic orbital electron populations 1.20804 0.88894 1.03568 1.03169 1.20259 0.97641 0.92606 0.98741 1.21213 0.93306 0.98847 1.02303 1.21059 0.94808 0.97833 0.99382 1.19841 0.94374 0.93897 1.02184 1.21804 0.90148 0.88828 0.94432 0.91927 1.23138 0.95275 1.02524 0.95463 1.22960 0.97214 0.98160 0.98499 1.20579 0.83006 0.94764 0.90649 0.94651 1.21664 1.02553 1.21944 1.11425 0.94247 1.25878 0.98202 0.98169 0.94923 1.70068 1.32840 1.39218 1.16118 0.85994 0.82999 0.78516 0.76792 1.20122 1.22154 1.13606 1.88728 1.43598 1.38717 1.60454 1.19938 0.94465 0.94697 0.99297 1.20904 0.99853 0.93255 1.03342 1.21143 0.92743 0.98617 1.01876 0.90074 0.91120 0.90317 0.84954 0.87637 0.90437 0.88290 0.91961 0.89698 0.92543 0.89599 0.89762 0.92308 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 71.24 0.71 -0.94 16 2 C -0.09 -2.15 5.88 -19.87 -0.12 -2.27 16 3 C -0.14 -3.83 9.70 22.27 0.22 -3.61 16 4 C -0.11 -3.85 9.37 22.27 0.21 -3.64 16 5 C -0.10 -3.48 5.10 -19.87 -0.10 -3.58 16 6 C 0.11 4.00 3.15 30.51 0.10 4.09 16 7 H 0.06 2.44 6.19 -2.39 -0.01 2.43 16 8 C -0.13 -4.06 6.56 32.06 0.21 -3.85 16 9 C -0.13 -5.03 6.53 31.86 0.21 -4.82 16 10 C 0.17 8.03 2.83 30.32 0.09 8.12 16 11 H 0.04 1.72 7.55 -2.39 -0.02 1.70 16 12 C -0.54 -31.86 9.33 25.60 0.24 -31.62 16 13 H 0.04 2.53 7.77 -2.91 -0.02 2.51 16 14 C 0.03 1.66 5.47 84.65 0.46 2.12 16 15 N -0.94 -60.89 13.96 21.45 0.30 -60.59 16 16 Si 0.93 47.43 27.01 68.60 1.85 49.29 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 18 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 19 H -0.21 -10.50 5.39 99.48 0.54 -9.96 16 20 O -0.39 -18.72 6.56 -148.98 -0.98 -19.70 16 21 C -0.08 -2.30 5.88 -19.86 -0.12 -2.42 16 22 C -0.12 -2.57 9.60 71.24 0.68 -1.89 16 23 C -0.13 -2.93 9.36 22.27 0.21 -2.72 16 24 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 26 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 27 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 28 H 0.11 4.00 7.36 -2.91 -0.02 3.98 16 29 H 0.08 2.35 8.05 -2.39 -0.02 2.33 16 30 H 0.10 2.57 8.14 -2.39 -0.02 2.56 16 31 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 32 H 0.08 2.87 8.14 -2.39 -0.02 2.86 16 33 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 34 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 36 H 0.06 1.47 6.04 -2.39 -0.01 1.46 16 37 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -70.85 297.75 5.04 -65.81 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.87 Total: 12.23 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 3.00 Total: -47.03 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.30 Total: -60.59 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.98 Total: -19.70 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.85 Total: 49.29 kcal Total: -70.85 5.04 -65.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393745675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.084 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds