Wall clock time and date at job start Mon Mar 30 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.50698 * 119.99559 * 179.71963 * 5 4 3 7 7 H 1.08996 * 110.32892 * 217.24064 * 6 5 4 8 8 C 1.54479 * 110.37142 * 94.99779 * 6 5 4 9 9 C 1.54511 * 104.06415 * 217.18898 * 8 6 5 10 10 C 1.54487 * 104.06115 * 359.97438 * 9 8 6 11 11 H 1.09002 * 110.36885 * 265.03773 * 10 9 8 12 12 C 1.50700 * 110.37162 * 142.81214 * 10 9 8 13 13 H 1.07994 * 120.00172 * 0.02562 * 12 10 9 14 14 C 1.37877 * 119.99775 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99895 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00001 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47052 * 60.00417 * 16 14 12 18 18 H 1.48499 * 109.46981 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47127 * 300.00343 * 16 14 12 20 20 O 1.44422 * 104.80325 * 23.97790 * 10 9 8 21 21 C 1.38208 * 120.00078 * 359.52112 * 5 4 3 22 22 C 1.50697 * 120.00178 * 180.21352 * 21 5 4 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.09001 * 110.51666 * 335.82834 * 8 6 5 30 30 H 1.08998 * 110.51473 * 98.40695 * 8 6 5 31 31 H 1.08993 * 110.51789 * 118.64259 * 9 8 6 32 32 H 1.08998 * 110.51001 * 241.22368 * 9 8 6 33 33 H 0.97003 * 120.00203 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.47662 * 270.21974 * 22 21 5 35 35 H 1.09005 * 109.46941 * 30.21466 * 22 21 5 36 36 H 1.09000 * 109.47383 * 150.21880 * 22 21 5 37 37 H 1.08001 * 119.99686 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 5.7787 0.0000 -0.0107 7 1 6.1550 -0.8122 -0.6326 8 6 6.3220 -0.1296 1.4296 9 6 7.5720 0.7785 1.4424 10 6 7.6365 1.3487 0.0080 11 1 8.3009 0.7454 -0.6106 12 6 8.1022 2.7817 0.0336 13 1 8.3353 3.2570 0.9749 14 6 8.2319 3.4855 -1.1448 15 7 7.9486 2.9065 -2.2911 16 14 8.8086 5.2620 -1.1131 17 1 10.1603 5.3327 -0.5025 18 1 8.8644 5.7890 -2.5003 19 1 7.8600 6.0761 -0.3115 20 8 6.2802 1.2695 -0.4818 21 6 3.5806 -1.1970 -0.0009 22 6 4.3341 -2.5021 -0.0020 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.5846 0.2257 2.1494 30 1 6.5957 -1.1628 1.6431 31 1 7.4526 1.5826 2.1684 32 1 8.4657 0.1950 1.6637 33 1 8.0394 3.4017 -3.1203 34 1 4.5154 -2.8162 -1.0300 35 1 5.2867 -2.3721 0.5116 36 1 3.7451 -3.2621 0.5115 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393745676.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:36 Heat of formation + Delta-G solvation = -40.256453 kcal Electronic energy + Delta-G solvation = -17810.784113 eV Core-core repulsion = 15131.065843 eV Total energy + Delta-G solvation = -2679.718270 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.56158 -37.67118 -33.68051 -32.51648 -31.61068 -30.78739 -28.86363 -26.95899 -26.23348 -23.98349 -22.01669 -21.05119 -20.07681 -19.42042 -16.83772 -15.67740 -15.58600 -14.92098 -14.42763 -14.32256 -13.82817 -13.55630 -13.43912 -13.11369 -12.84987 -12.54680 -12.35072 -12.20593 -11.84065 -11.69263 -11.55088 -10.97076 -10.89946 -10.69649 -10.57548 -10.37628 -10.18962 -10.01400 -9.63822 -9.11502 -8.61108 -8.35392 -8.17487 -7.90743 -6.01868 -4.14717 1.69131 1.80702 3.32436 3.37109 3.39365 4.08527 4.41932 4.91962 5.00514 5.14698 5.31021 5.34692 5.46802 5.52202 5.57441 5.65076 5.66674 5.78199 5.80362 5.84435 5.92098 6.04415 6.13677 6.27067 6.34078 6.37446 6.50138 6.61444 6.68047 6.79289 6.82071 6.88180 6.98663 7.19868 7.44238 7.51748 7.88295 8.22210 8.54180 8.96615 9.55945 11.06022 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.006243 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.410565 B = 4484.268647 C = 5081.890659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.098 4.098 3 C -0.131 4.131 4 C -0.082 4.082 5 C -0.069 4.069 6 C 0.102 3.898 7 H 0.059 0.941 8 C -0.142 4.142 9 C -0.146 4.146 10 C 0.205 3.795 11 H 0.027 0.973 12 C -0.530 4.530 13 H 0.063 0.937 14 C 0.077 3.923 15 N -0.864 5.864 16 Si 0.893 3.107 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 O -0.345 6.345 21 C -0.084 4.084 22 C -0.116 4.116 23 C -0.128 4.128 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.262 0.738 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.244 -8.250 4.883 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.100 4.100 5 C -0.069 4.069 6 C 0.043 3.957 7 H 0.077 0.923 8 C -0.180 4.180 9 C -0.184 4.184 10 C 0.150 3.850 11 H 0.045 0.955 12 C -0.567 4.567 13 H 0.081 0.919 14 C -0.129 4.129 15 N -0.501 5.501 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 O -0.264 6.264 21 C -0.084 4.084 22 C -0.172 4.172 23 C -0.146 4.146 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.154 0.846 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.358 -8.071 4.555 13.899 hybrid contribution 0.359 0.822 0.012 0.897 sum -9.999 -7.248 4.567 13.167 Atomic orbital electron populations 1.20725 0.91797 1.02169 1.01850 1.19798 0.95525 0.93346 1.01138 1.21014 0.94356 0.97114 1.02414 1.21190 0.93385 0.99081 0.96372 1.19772 0.95210 0.92593 0.99333 1.21575 0.89213 0.91230 0.93686 0.92325 1.22908 0.98433 0.99341 0.97273 1.23051 0.95544 0.98059 1.01774 1.20517 0.81028 0.96570 0.86870 0.95502 1.20995 1.45627 0.97028 0.93033 0.91881 1.25089 0.94029 0.98248 0.95531 1.70022 1.45720 1.36733 0.97581 0.86667 0.79284 0.84938 0.77135 1.20076 1.21169 1.20051 1.89493 1.30053 1.31697 1.75203 1.19640 0.93522 0.94699 1.00502 1.20828 1.00212 0.93971 1.02235 1.20704 0.93223 0.97106 1.03601 0.91633 0.92053 0.91897 0.86577 0.84622 0.91923 0.92225 0.91748 0.92680 0.92811 0.91317 0.91184 0.92008 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.10 -1.41 5.88 -104.62 -0.62 -2.03 16 3 C -0.13 -2.12 9.70 -39.58 -0.38 -2.50 16 4 C -0.08 -1.58 9.38 -39.58 -0.37 -1.95 16 5 C -0.07 -1.31 5.00 -104.63 -0.52 -1.83 16 6 C 0.10 2.12 2.71 -27.11 -0.07 2.05 16 7 H 0.06 1.20 7.19 -51.93 -0.37 0.82 16 8 C -0.14 -2.64 6.23 -25.16 -0.16 -2.79 16 9 C -0.15 -3.09 6.62 -25.16 -0.17 -3.26 16 10 C 0.21 5.35 3.06 -27.10 -0.08 5.27 16 11 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 12 C -0.53 -14.94 8.77 -34.44 -0.30 -15.25 16 13 H 0.06 1.72 7.57 -52.49 -0.40 1.32 16 14 C 0.08 2.19 5.43 -17.82 -0.10 2.09 16 15 N -0.86 -25.88 13.07 55.43 0.72 -25.15 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 O -0.35 -9.02 9.52 -35.23 -0.34 -9.36 16 21 C -0.08 -1.34 5.88 -104.63 -0.62 -1.96 16 22 C -0.12 -1.53 9.25 36.00 0.33 -1.19 16 23 C -0.13 -1.86 9.36 -39.58 -0.37 -2.23 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.06 0.62 8.09 -51.92 -0.42 0.20 16 27 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.14 2.89 7.28 -52.49 -0.38 2.51 16 29 H 0.06 1.14 7.87 -51.93 -0.41 0.73 16 30 H 0.06 0.95 7.35 -51.93 -0.38 0.56 16 31 H 0.06 1.37 7.71 -51.93 -0.40 0.97 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.93 5.74 -51.93 -0.30 0.63 16 36 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 302.68 15.07 4.56 4.56 Total: -1.00 -30.78 302.68 -8.71 -39.48 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.57 Total: 0.41 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -3.06 Total: -26.38 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.72 Total: -25.15 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.34 Total: -9.36 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.78 -8.71 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393745676.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.772 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds