Wall clock time and date at job start Mon Mar 30 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.50698 * 119.99559 * 179.71963 * 5 4 3 7 7 H 1.08996 * 110.32892 * 217.24064 * 6 5 4 8 8 C 1.54479 * 110.37142 * 94.99779 * 6 5 4 9 9 C 1.54511 * 104.06415 * 217.18898 * 8 6 5 10 10 C 1.54487 * 104.06115 * 359.97438 * 9 8 6 11 11 H 1.09002 * 110.36885 * 265.03773 * 10 9 8 12 12 C 1.50700 * 110.37162 * 142.81214 * 10 9 8 13 13 H 1.07994 * 120.00172 * 0.02562 * 12 10 9 14 14 C 1.37877 * 119.99775 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99895 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00001 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47052 * 60.00417 * 16 14 12 18 18 H 1.48499 * 109.46981 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47127 * 300.00343 * 16 14 12 20 20 O 1.44422 * 104.80325 * 23.97790 * 10 9 8 21 21 C 1.38208 * 120.00078 * 359.52112 * 5 4 3 22 22 C 1.50697 * 120.00178 * 180.21352 * 21 5 4 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.09001 * 110.51666 * 335.82834 * 8 6 5 30 30 H 1.08998 * 110.51473 * 98.40695 * 8 6 5 31 31 H 1.08993 * 110.51789 * 118.64259 * 9 8 6 32 32 H 1.08998 * 110.51001 * 241.22368 * 9 8 6 33 33 H 0.97003 * 120.00203 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.47662 * 270.21974 * 22 21 5 35 35 H 1.09005 * 109.46941 * 30.21466 * 22 21 5 36 36 H 1.09000 * 109.47383 * 150.21880 * 22 21 5 37 37 H 1.08001 * 119.99686 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 5.7787 0.0000 -0.0107 7 1 6.1550 -0.8122 -0.6326 8 6 6.3220 -0.1296 1.4296 9 6 7.5720 0.7785 1.4424 10 6 7.6365 1.3487 0.0080 11 1 8.3009 0.7454 -0.6106 12 6 8.1022 2.7817 0.0336 13 1 8.3353 3.2570 0.9749 14 6 8.2319 3.4855 -1.1448 15 7 7.9486 2.9065 -2.2911 16 14 8.8086 5.2620 -1.1131 17 1 10.1603 5.3327 -0.5025 18 1 8.8644 5.7890 -2.5003 19 1 7.8600 6.0761 -0.3115 20 8 6.2802 1.2695 -0.4818 21 6 3.5806 -1.1970 -0.0009 22 6 4.3341 -2.5021 -0.0020 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.5846 0.2257 2.1494 30 1 6.5957 -1.1628 1.6431 31 1 7.4526 1.5826 2.1684 32 1 8.4657 0.1950 1.6637 33 1 8.0394 3.4017 -3.1203 34 1 4.5154 -2.8162 -1.0300 35 1 5.2867 -2.3721 0.5116 36 1 3.7451 -3.2621 0.5115 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393745676.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:36 Heat of formation + Delta-G solvation = -57.280230 kcal Electronic energy + Delta-G solvation = -17811.522319 eV Core-core repulsion = 15131.065843 eV Total energy + Delta-G solvation = -2680.456477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95518 -39.31002 -35.13774 -34.37689 -32.93990 -32.52476 -30.47027 -28.12091 -27.75113 -25.67017 -23.54660 -22.46784 -21.81336 -20.76811 -18.86353 -17.17780 -17.14522 -16.67720 -16.21509 -15.64838 -15.21831 -15.03256 -14.90993 -14.34897 -14.04041 -14.00578 -13.85983 -13.62935 -13.23526 -12.93179 -12.79651 -12.73285 -12.44657 -12.34470 -12.22011 -11.91002 -11.76806 -11.66630 -11.31107 -11.06857 -10.74482 -10.11909 -9.60219 -9.23249 -8.19095 -6.39860 0.43614 0.53242 1.38321 1.41877 1.49508 2.38391 2.80438 3.03517 3.59194 3.84702 3.96452 4.04552 4.06968 4.15768 4.19244 4.40013 4.46571 4.59273 4.64303 4.71573 4.81894 4.83648 4.89020 4.96006 4.96207 4.99810 5.06071 5.10869 5.22652 5.32388 5.39829 5.47860 5.62036 5.70565 5.73299 5.85243 6.13019 6.19420 6.53706 6.89513 7.35771 8.89598 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.006243 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.410565 B = 4484.268647 C = 5081.890659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.092 4.092 3 C -0.139 4.139 4 C -0.112 4.112 5 C -0.097 4.097 6 C 0.097 3.903 7 H 0.056 0.944 8 C -0.127 4.127 9 C -0.139 4.139 10 C 0.196 3.804 11 H -0.005 1.005 12 C -0.552 4.552 13 H 0.066 0.934 14 C 0.021 3.979 15 N -0.905 5.905 16 Si 0.964 3.036 17 H -0.261 1.261 18 H -0.282 1.282 19 H -0.271 1.271 20 O -0.381 6.381 21 C -0.085 4.085 22 C -0.116 4.116 23 C -0.125 4.125 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.130 0.870 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.262 0.738 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 -9.584 6.013 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.092 4.092 3 C -0.157 4.157 4 C -0.130 4.130 5 C -0.098 4.098 6 C 0.039 3.961 7 H 0.074 0.926 8 C -0.165 4.165 9 C -0.177 4.177 10 C 0.141 3.859 11 H 0.012 0.988 12 C -0.589 4.589 13 H 0.084 0.916 14 C -0.181 4.181 15 N -0.543 5.543 16 Si 0.788 3.212 17 H -0.185 1.185 18 H -0.207 1.207 19 H -0.196 1.196 20 O -0.301 6.301 21 C -0.085 4.085 22 C -0.172 4.172 23 C -0.143 4.143 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.148 0.852 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.150 -9.413 5.705 16.395 hybrid contribution 0.832 1.161 -0.354 1.471 sum -11.318 -8.253 5.351 14.995 Atomic orbital electron populations 1.20801 0.88657 1.03794 1.03058 1.20268 0.97748 0.92457 0.98728 1.21191 0.93104 0.98965 1.02468 1.21023 0.94910 0.97842 0.99252 1.19741 0.94050 0.93894 1.02072 1.21753 0.90891 0.88813 0.94672 0.92585 1.22835 0.96991 1.00724 0.95938 1.22930 0.97872 0.98583 0.98293 1.20427 0.80791 0.95496 0.89223 0.98774 1.21440 1.45767 0.98380 0.93331 0.91611 1.26002 0.94058 1.02969 0.95033 1.70171 1.47268 1.38612 0.98227 0.85544 0.79291 0.79076 0.77317 1.18533 1.20724 1.19591 1.89411 1.29765 1.34686 1.76203 1.19960 0.94569 0.94595 0.99368 1.20894 1.00205 0.93190 1.02911 1.21161 0.92643 0.98654 1.01854 0.90450 0.89836 0.90984 0.85200 0.88533 0.91501 0.88748 0.92180 0.90576 0.92873 0.90886 0.91650 0.88905 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 10.01 71.24 0.71 -1.15 16 2 C -0.09 -2.41 5.88 -19.87 -0.12 -2.53 16 3 C -0.14 -4.47 9.70 22.27 0.22 -4.25 16 4 C -0.11 -4.50 9.38 22.27 0.21 -4.29 16 5 C -0.10 -3.75 5.00 -19.87 -0.10 -3.85 16 6 C 0.10 4.15 2.71 30.35 0.08 4.23 16 7 H 0.06 2.36 7.19 -2.39 -0.02 2.34 16 8 C -0.13 -4.68 6.23 31.61 0.20 -4.48 16 9 C -0.14 -5.93 6.62 31.61 0.21 -5.72 16 10 C 0.20 10.71 3.06 30.35 0.09 10.81 16 11 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 12 C -0.55 -32.33 8.77 25.60 0.22 -32.11 16 13 H 0.07 3.69 7.57 -2.91 -0.02 3.66 16 14 C 0.02 1.25 5.43 84.65 0.46 1.71 16 15 N -0.91 -56.57 13.07 21.45 0.28 -56.29 16 16 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 O -0.38 -21.07 9.52 -148.98 -1.42 -22.49 16 21 C -0.08 -2.57 5.88 -19.87 -0.12 -2.69 16 22 C -0.12 -2.73 9.25 71.24 0.66 -2.07 16 23 C -0.13 -3.21 9.36 22.27 0.21 -3.01 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 26 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 27 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.10 4.52 7.28 -2.91 -0.02 4.50 16 29 H 0.07 2.39 7.87 -2.39 -0.02 2.37 16 30 H 0.09 2.79 7.35 -2.39 -0.02 2.77 16 31 H 0.06 2.58 7.71 -2.39 -0.02 2.56 16 32 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.06 1.59 5.74 -2.38 -0.01 1.58 16 36 H 0.09 1.61 8.09 -2.39 -0.02 1.59 16 37 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -70.51 302.68 4.86 -65.65 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 1.04 Total: 15.37 kcal Atomic # 6 Polarization: -52.35 SS G_CDS: 2.94 Total: -49.41 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.28 Total: -56.29 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.42 Total: -22.49 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.51 4.86 -65.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393745676.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.367 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds