Wall clock time and date at job start Mon Mar 30 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00016 * 2 1 4 4 C 1.52999 * 109.47051 * 124.99764 * 3 2 1 5 5 C 1.53009 * 109.46969 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47029 * 180.02562 * 5 4 3 7 7 C 1.42901 * 113.99945 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.46851 * 179.97438 * 7 6 5 9 9 C 1.38629 * 119.75270 * 269.72268 * 8 7 6 10 10 C 1.37622 * 120.25073 * 179.72445 * 9 8 7 11 11 C 1.40711 * 119.74255 * 0.57160 * 10 9 8 12 12 C 1.41400 * 120.24519 * 179.67986 * 11 10 9 13 13 H 1.07993 * 120.00417 * 204.40825 * 12 11 10 14 14 C 1.39949 * 119.99722 * 24.41101 * 12 11 10 15 15 N 1.30829 * 120.00062 * 17.84366 * 14 12 11 16 16 Si 1.86798 * 120.00043 * 197.84420 * 14 12 11 17 17 H 1.48505 * 109.46835 * 60.00206 * 16 14 12 18 18 H 1.48500 * 109.47096 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47401 * 300.00354 * 16 14 12 20 20 C 1.40712 * 119.51307 * 359.70710 * 11 10 9 21 21 C 1.37613 * 119.74639 * 359.97438 * 20 11 10 22 22 H 1.07997 * 119.99689 * 179.97438 * 1 2 3 23 23 H 1.07997 * 119.99930 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99601 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.46900 * 4.99584 * 3 2 1 26 26 H 1.09004 * 109.47149 * 245.00016 * 3 2 1 27 27 H 1.09003 * 109.46794 * 60.00430 * 4 3 2 28 28 H 1.08992 * 109.47564 * 299.99860 * 4 3 2 29 29 H 1.08997 * 109.46954 * 59.99838 * 5 4 3 30 30 H 1.09000 * 109.46756 * 299.99988 * 5 4 3 31 31 H 1.09001 * 109.46809 * 59.99754 * 7 6 5 32 32 H 1.09000 * 109.46689 * 299.99284 * 7 6 5 33 33 H 1.08007 * 119.87515 * 359.97438 * 9 8 7 34 34 H 1.08002 * 120.12595 * 180.28405 * 10 9 8 35 35 H 0.96994 * 119.99970 * 179.97438 * 15 14 12 36 36 H 1.08000 * 120.12635 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.87953 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7996 2.6584 1.1820 6 8 4.7074 2.6843 2.2853 7 6 5.4749 3.8861 2.3784 8 6 6.3924 3.8050 3.5710 9 6 5.9593 4.2652 4.8048 10 6 6.7867 4.1909 5.9021 11 6 8.0810 3.6562 5.7654 12 6 8.9424 3.5810 6.8842 13 1 10.0125 3.5562 6.7412 14 6 8.4081 3.5387 8.1770 15 7 7.1519 3.2196 8.3555 16 14 9.4884 3.9378 9.6476 17 1 10.0074 5.3232 9.5191 18 1 8.6901 3.8213 10.8944 19 1 10.6268 2.9855 9.6986 20 6 8.5122 3.1974 4.5069 21 6 7.6655 3.2755 3.4249 22 1 -0.5399 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3586 2.1315 0.0895 26 1 2.6214 1.4026 -0.9314 27 1 3.7400 0.5065 1.0920 28 1 2.4773 1.2356 2.1130 29 1 3.0944 3.4846 1.2717 30 1 4.3574 2.7563 0.2506 31 1 4.8042 4.7375 2.4936 32 1 6.0671 4.0100 1.4717 33 1 4.9672 4.6801 4.9063 34 1 6.4454 4.5459 6.8633 35 1 6.7817 3.1899 9.2515 36 1 9.5038 2.7856 4.3907 37 1 7.9940 2.9236 2.4582 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399008093.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:17 Heat of formation + Delta-G solvation = -31.011935 kcal Electronic energy + Delta-G solvation = -16442.438944 eV Core-core repulsion = 13763.121546 eV Total energy + Delta-G solvation = -2679.317398 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.12175 -37.10237 -35.68533 -33.75749 -31.70174 -30.26284 -29.25096 -26.99795 -25.45232 -23.39834 -21.58586 -20.97681 -20.00542 -19.87250 -17.29600 -16.23550 -15.95552 -15.40147 -15.05296 -14.87613 -14.09040 -13.92744 -13.58998 -13.17380 -12.76311 -12.32901 -12.28583 -11.92814 -11.66945 -11.58484 -11.36625 -11.10522 -10.99463 -10.80825 -10.68141 -10.55711 -10.28388 -9.61489 -9.49733 -9.39117 -9.17733 -9.06701 -7.45168 -7.33328 -6.76747 -4.36432 2.09752 2.71280 3.06105 3.08396 3.10149 3.16397 3.92188 4.17151 4.63901 4.82202 4.88566 5.10905 5.34097 5.40089 5.47394 5.61413 5.67825 5.74332 5.77160 5.82470 5.90485 6.14480 6.19796 6.26251 6.39486 6.41895 6.44825 6.59601 6.95976 7.06983 7.29460 7.37681 7.61989 7.72218 7.89466 8.05173 8.13586 8.29764 8.63904 8.88647 8.97597 10.17422 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039454 B = 0.003504 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.511463 B = 7989.301752 C = 8357.936370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.092 4.092 4 C -0.114 4.114 5 C 0.059 3.941 6 O -0.383 6.383 7 C 0.129 3.871 8 C -0.224 4.224 9 C -0.080 4.080 10 C -0.170 4.170 11 C 0.115 3.885 12 C -0.461 4.461 13 H 0.078 0.922 14 C 0.075 3.925 15 N -0.789 5.789 16 Si 0.909 3.091 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.230 4.230 21 C -0.069 4.069 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.282 0.718 36 H 0.093 0.907 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 -1.475 -10.614 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.166 4.166 3 C -0.130 4.130 4 C -0.152 4.152 5 C -0.018 4.018 6 O -0.303 6.303 7 C 0.054 3.946 8 C -0.225 4.225 9 C -0.099 4.099 10 C -0.189 4.189 11 C 0.113 3.887 12 C -0.491 4.491 13 H 0.096 0.904 14 C -0.143 4.143 15 N -0.414 5.414 16 Si 0.734 3.266 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.250 4.250 21 C -0.088 4.088 22 H 0.114 0.886 23 H 0.113 0.887 24 H 0.127 0.873 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.198 -1.668 -10.286 13.259 hybrid contribution 0.328 0.231 0.537 0.670 sum -7.869 -1.438 -9.749 12.611 Atomic orbital electron populations 1.23840 0.95965 1.01746 1.02097 1.22971 0.96016 0.98587 0.99034 1.20696 0.98097 0.95474 0.98701 1.21450 0.97711 0.97503 0.98542 1.22399 0.92098 0.97224 0.90093 1.88096 1.54253 1.40263 1.47685 1.21098 0.91611 0.85594 0.96325 1.18776 0.95138 1.14630 0.93968 1.20530 0.97379 0.99342 0.92635 1.21291 0.95756 1.04445 0.97429 1.17649 0.92196 0.87127 0.91758 1.19596 0.94697 1.44610 0.90155 0.90383 1.25944 0.95301 0.92195 1.00857 1.69832 1.14234 1.32739 1.24604 0.86354 0.80563 0.80253 0.79473 1.18789 1.20314 1.18979 1.20954 0.99792 1.10122 0.94112 1.20369 0.93692 0.97906 0.96815 0.88613 0.88659 0.87305 0.91457 0.90910 0.91026 0.91033 0.94106 0.94104 0.94427 0.94486 0.89502 0.86367 0.90738 0.88920 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.72 14.32 29.01 0.42 -1.30 16 2 C -0.15 -1.39 9.52 -36.03 -0.34 -1.73 16 3 C -0.09 -0.90 5.66 -27.89 -0.16 -1.06 16 4 C -0.11 -1.42 5.57 -26.73 -0.15 -1.57 16 5 C 0.06 0.83 5.94 37.16 0.22 1.05 16 6 O -0.38 -7.37 10.33 -35.23 -0.36 -7.74 16 7 C 0.13 2.46 6.05 36.00 0.22 2.68 16 8 C -0.22 -5.17 5.53 -104.33 -0.58 -5.74 16 9 C -0.08 -1.96 9.67 -39.66 -0.38 -2.34 16 10 C -0.17 -4.53 8.70 -38.87 -0.34 -4.87 16 11 C 0.12 3.14 5.57 -106.83 -0.60 2.55 16 12 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 13 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 14 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 15 N -0.79 -20.68 10.95 55.55 0.61 -20.07 16 16 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 C -0.23 -5.82 9.80 -38.88 -0.38 -6.21 16 21 C -0.07 -1.63 9.67 -39.66 -0.38 -2.01 16 22 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 23 H 0.10 0.76 7.84 -52.49 -0.41 0.35 16 24 H 0.11 0.96 8.06 -52.48 -0.42 0.53 16 25 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 34 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 35 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 36 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 317.53 15.07 4.79 4.79 Total: -1.00 -28.46 317.53 -8.64 -37.10 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.76 Total: 3.70 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: -2.88 Total: -31.46 kcal Atomic # 7 Polarization: -20.68 SS G_CDS: 0.61 Total: -20.07 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.36 Total: -7.74 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.46 -8.64 -37.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399008093.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.090 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds