Wall clock time and date at job start Mon Mar 30 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00016 * 2 1 4 4 C 1.52999 * 109.47051 * 124.99764 * 3 2 1 5 5 C 1.53009 * 109.46969 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47029 * 180.02562 * 5 4 3 7 7 C 1.42901 * 113.99945 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.46851 * 179.97438 * 7 6 5 9 9 C 1.38629 * 119.75270 * 269.72268 * 8 7 6 10 10 C 1.37622 * 120.25073 * 179.72445 * 9 8 7 11 11 C 1.40711 * 119.74255 * 0.57160 * 10 9 8 12 12 C 1.41400 * 120.24519 * 179.67986 * 11 10 9 13 13 H 1.07993 * 120.00417 * 204.40825 * 12 11 10 14 14 C 1.39949 * 119.99722 * 24.41101 * 12 11 10 15 15 N 1.30829 * 120.00062 * 17.84366 * 14 12 11 16 16 Si 1.86798 * 120.00043 * 197.84420 * 14 12 11 17 17 H 1.48505 * 109.46835 * 60.00206 * 16 14 12 18 18 H 1.48500 * 109.47096 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47401 * 300.00354 * 16 14 12 20 20 C 1.40712 * 119.51307 * 359.70710 * 11 10 9 21 21 C 1.37613 * 119.74639 * 359.97438 * 20 11 10 22 22 H 1.07997 * 119.99689 * 179.97438 * 1 2 3 23 23 H 1.07997 * 119.99930 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99601 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.46900 * 4.99584 * 3 2 1 26 26 H 1.09004 * 109.47149 * 245.00016 * 3 2 1 27 27 H 1.09003 * 109.46794 * 60.00430 * 4 3 2 28 28 H 1.08992 * 109.47564 * 299.99860 * 4 3 2 29 29 H 1.08997 * 109.46954 * 59.99838 * 5 4 3 30 30 H 1.09000 * 109.46756 * 299.99988 * 5 4 3 31 31 H 1.09001 * 109.46809 * 59.99754 * 7 6 5 32 32 H 1.09000 * 109.46689 * 299.99284 * 7 6 5 33 33 H 1.08007 * 119.87515 * 359.97438 * 9 8 7 34 34 H 1.08002 * 120.12595 * 180.28405 * 10 9 8 35 35 H 0.96994 * 119.99970 * 179.97438 * 15 14 12 36 36 H 1.08000 * 120.12635 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.87953 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7996 2.6584 1.1820 6 8 4.7074 2.6843 2.2853 7 6 5.4749 3.8861 2.3784 8 6 6.3924 3.8050 3.5710 9 6 5.9593 4.2652 4.8048 10 6 6.7867 4.1909 5.9021 11 6 8.0810 3.6562 5.7654 12 6 8.9424 3.5810 6.8842 13 1 10.0125 3.5562 6.7412 14 6 8.4081 3.5387 8.1770 15 7 7.1519 3.2196 8.3555 16 14 9.4884 3.9378 9.6476 17 1 10.0074 5.3232 9.5191 18 1 8.6901 3.8213 10.8944 19 1 10.6268 2.9855 9.6986 20 6 8.5122 3.1974 4.5069 21 6 7.6655 3.2755 3.4249 22 1 -0.5399 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3586 2.1315 0.0895 26 1 2.6214 1.4026 -0.9314 27 1 3.7400 0.5065 1.0920 28 1 2.4773 1.2356 2.1130 29 1 3.0944 3.4846 1.2717 30 1 4.3574 2.7563 0.2506 31 1 4.8042 4.7375 2.4936 32 1 6.0671 4.0100 1.4717 33 1 4.9672 4.6801 4.9063 34 1 6.4454 4.5459 6.8633 35 1 6.7817 3.1899 9.2515 36 1 9.5038 2.7856 4.3907 37 1 7.9940 2.9236 2.4582 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399008093.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:17 Heat of formation + Delta-G solvation = -44.668551 kcal Electronic energy + Delta-G solvation = -16443.031139 eV Core-core repulsion = 13763.121546 eV Total energy + Delta-G solvation = -2679.909593 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.76748 -38.62405 -36.62893 -35.60050 -32.89942 -31.84580 -31.17574 -28.65678 -26.57331 -25.10120 -22.91563 -22.59967 -21.74506 -20.66477 -19.24566 -17.45732 -17.26162 -17.08149 -16.45732 -16.05302 -15.69998 -15.38770 -14.90322 -14.57854 -14.23261 -13.84697 -13.70359 -13.51959 -13.24970 -12.89569 -12.74214 -12.67024 -12.35184 -12.29518 -11.94956 -11.75359 -11.66912 -11.42175 -11.27943 -11.02967 -10.44304 -10.21244 -9.40110 -9.28382 -8.65959 -6.37091 0.87578 1.12892 1.37650 1.40773 1.49039 1.52641 2.19973 2.59962 3.09734 3.75641 3.97089 4.02400 4.24962 4.26356 4.29651 4.45496 4.50301 4.57601 4.59309 4.60981 4.67439 4.68354 4.90952 5.02479 5.05584 5.13992 5.20592 5.31844 5.34822 5.43931 5.68377 5.76859 5.90151 5.92232 6.07704 6.20896 6.35512 6.45839 6.67305 6.91073 7.00896 8.30978 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039454 B = 0.003504 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.511463 B = 7989.301752 C = 8357.936370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C -0.085 4.085 4 C -0.111 4.111 5 C 0.054 3.946 6 O -0.414 6.414 7 C 0.133 3.867 8 C -0.222 4.222 9 C -0.088 4.088 10 C -0.195 4.195 11 C 0.082 3.918 12 C -0.499 4.499 13 H 0.078 0.922 14 C 0.033 3.967 15 N -0.824 5.824 16 Si 0.986 3.014 17 H -0.259 1.259 18 H -0.267 1.267 19 H -0.258 1.258 20 C -0.247 4.247 21 C -0.073 4.073 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.289 0.711 36 H 0.100 0.900 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.618 -1.337 -11.789 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.184 4.184 3 C -0.122 4.122 4 C -0.149 4.149 5 C -0.023 4.023 6 O -0.335 6.335 7 C 0.057 3.943 8 C -0.223 4.223 9 C -0.106 4.106 10 C -0.214 4.214 11 C 0.080 3.920 12 C -0.528 4.528 13 H 0.096 0.904 14 C -0.182 4.182 15 N -0.449 5.449 16 Si 0.806 3.194 17 H -0.183 1.183 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.267 4.267 21 C -0.091 4.091 22 H 0.124 0.876 23 H 0.120 0.880 24 H 0.129 0.871 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.788 -1.535 -11.488 14.545 hybrid contribution 0.388 0.149 0.748 0.856 sum -8.400 -1.386 -10.739 13.705 Atomic orbital electron populations 1.24032 0.95839 1.02628 1.00718 1.23040 0.96436 0.98596 1.00280 1.20635 0.97698 0.95992 0.97860 1.21432 0.97784 0.96501 0.99150 1.22672 0.91848 0.98488 0.89253 1.88020 1.55295 1.40141 1.50020 1.21033 0.91720 0.86272 0.95237 1.19279 0.95784 1.12294 0.94932 1.20803 0.97855 0.99231 0.92753 1.21280 0.96453 1.05980 0.97691 1.18022 0.92886 0.88147 0.92965 1.19868 0.94821 1.46770 0.91389 0.90367 1.26846 0.96705 0.91202 1.03445 1.69889 1.15974 1.33319 1.25758 0.85200 0.78578 0.80027 0.75577 1.18332 1.19120 1.18259 1.21189 1.00673 1.10497 0.94295 1.20725 0.93615 0.97233 0.97541 0.87588 0.88022 0.87149 0.90682 0.89755 0.91818 0.92524 0.92708 0.92207 0.92782 0.92147 0.87742 0.87970 0.90014 0.88188 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.97 14.32 67.77 0.97 -2.00 16 2 C -0.17 -2.82 9.52 25.64 0.24 -2.57 16 3 C -0.08 -1.46 5.66 29.85 0.17 -1.29 16 4 C -0.11 -2.58 5.57 30.60 0.17 -2.41 16 5 C 0.05 1.38 5.94 71.99 0.43 1.80 16 6 O -0.41 -15.09 10.33 -148.98 -1.54 -16.63 16 7 C 0.13 4.72 6.05 71.23 0.43 5.15 16 8 C -0.22 -9.97 5.53 -19.68 -0.11 -10.08 16 9 C -0.09 -4.30 9.67 22.22 0.21 -4.09 16 10 C -0.19 -10.71 8.70 22.73 0.20 -10.51 16 11 C 0.08 4.62 5.57 -21.29 -0.12 4.50 16 12 C -0.50 -27.68 9.05 23.46 0.21 -27.47 16 13 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 14 C 0.03 1.71 5.14 85.26 0.44 2.15 16 15 N -0.82 -44.34 10.95 21.83 0.24 -44.10 16 16 Si 0.99 38.69 29.59 68.60 2.03 40.72 16 17 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 18 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 20 C -0.25 -12.66 9.80 22.73 0.22 -12.44 16 21 C -0.07 -3.35 9.67 22.22 0.21 -3.14 16 22 H 0.11 1.37 8.06 -2.91 -0.02 1.34 16 23 H 0.10 1.40 7.84 -2.91 -0.02 1.37 16 24 H 0.11 1.80 8.06 -2.91 -0.02 1.78 16 25 H 0.07 1.18 7.79 -2.39 -0.02 1.16 16 26 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 32 H 0.06 1.86 8.08 -2.39 -0.02 1.85 16 33 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.10 5.83 6.16 -2.91 -0.02 5.81 16 35 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 36 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 37 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -62.18 317.53 5.43 -56.75 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 1.02 Total: 25.65 kcal Atomic # 6 Polarization: -66.08 SS G_CDS: 3.69 Total: -62.40 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.24 Total: -44.10 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -1.54 Total: -16.63 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -62.18 5.43 -56.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399008093.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.077 kcal (2) G-P(sol) polarization free energy of solvation -62.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds