Wall clock time and date at job start Mon Mar 30 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48502 * 109.47151 * 269.99976 * 3 2 1 5 5 H 1.48497 * 109.47468 * 29.99964 * 3 2 1 6 6 H 1.48500 * 109.47187 * 149.99978 * 3 2 1 7 7 C 1.39945 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00051 * 197.84871 * 7 2 1 9 9 C 1.41402 * 119.99874 * 17.84641 * 7 2 1 10 10 C 1.40710 * 120.24466 * 204.38501 * 9 7 2 11 11 C 1.37615 * 119.74272 * 180.02562 * 10 9 7 12 12 C 1.38629 * 120.25256 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75224 * 179.97438 * 12 11 10 14 14 O 1.42892 * 109.47443 * 90.00057 * 13 12 11 15 15 C 1.42894 * 114.00538 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47652 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47490 * 179.97438 * 16 15 14 18 18 C 1.52995 * 117.50163 * 243.74570 * 17 16 15 19 19 C 1.53001 * 117.50309 * 175.08581 * 17 16 15 20 20 C 1.38633 * 120.49935 * 0.25256 * 12 11 10 21 21 C 1.37626 * 120.24985 * 359.44856 * 20 12 11 22 22 H 0.97002 * 120.00394 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.12782 * 0.02562 * 10 9 7 24 24 H 1.08003 * 119.87400 * 180.02562 * 11 10 9 25 25 H 1.08999 * 109.47081 * 329.99647 * 13 12 11 26 26 H 1.09003 * 109.47076 * 210.00350 * 13 12 11 27 27 H 1.09004 * 109.46873 * 299.99984 * 15 14 13 28 28 H 1.09003 * 109.47063 * 59.99751 * 15 14 13 29 29 H 1.09004 * 109.46898 * 299.99881 * 16 15 14 30 30 H 1.09003 * 109.47161 * 59.99724 * 16 15 14 31 31 H 1.09007 * 115.54897 * 29.41198 * 17 16 15 32 32 H 1.09003 * 117.49544 * 0.02562 * 18 17 16 33 33 H 1.09005 * 117.49818 * 145.01548 * 18 17 16 34 34 H 1.09000 * 117.49974 * 214.98314 * 19 17 16 35 35 H 1.09000 * 117.49533 * 0.02562 * 19 17 16 36 36 H 1.08005 * 119.88004 * 179.70266 * 20 12 11 37 37 H 1.07997 * 120.13123 * 180.27487 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0491 -1.2342 0.2872 9 6 1.3521 -2.4072 -0.3742 10 6 1.8259 -3.6498 0.0856 11 6 1.1800 -4.8067 -0.2860 12 6 0.0668 -4.7512 -1.1104 13 6 -0.6316 -6.0252 -1.5108 14 8 -1.6490 -6.3312 -0.5553 15 6 -2.3755 -7.5277 -0.8427 16 6 -3.4330 -7.7548 0.2394 17 6 -4.2112 -9.0355 -0.0687 18 6 -5.7056 -8.8995 -0.3673 19 6 -5.2420 -9.5011 0.9617 20 6 -0.4053 -3.5330 -1.5740 21 6 0.2212 -2.3628 -1.2104 22 1 -0.4851 0.8400 -0.0004 23 1 2.6932 -3.6954 0.7276 24 1 1.5416 -5.7616 0.0661 25 1 0.0913 -6.8403 -1.5456 26 1 -1.0834 -5.8981 -2.4946 27 1 -2.8635 -7.4322 -1.8127 28 1 -1.6886 -8.3738 -0.8633 29 1 -2.9453 -7.8501 1.2096 30 1 -4.1198 -6.9086 0.2596 31 1 -3.6578 -9.8033 -0.6095 32 1 -6.1342 -7.8975 -0.3446 33 1 -6.1354 -9.5781 -1.1041 34 1 -5.3669 -10.5752 1.0987 35 1 -5.3659 -8.8947 1.8589 36 1 -1.2705 -3.5017 -2.2198 37 1 -0.1509 -1.4145 -1.5691 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399008488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:15 Heat of formation + Delta-G solvation = -22.079988 kcal Electronic energy + Delta-G solvation = -16558.839765 eV Core-core repulsion = 13879.909685 eV Total energy + Delta-G solvation = -2678.930080 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.28889 -37.62873 -36.60071 -33.77059 -31.27487 -29.89488 -29.23820 -26.69088 -23.64272 -23.04065 -22.49341 -20.98005 -20.56861 -19.87166 -17.29512 -16.06753 -15.98663 -15.61717 -15.21830 -14.66179 -14.11884 -13.87684 -13.72408 -13.00704 -12.73352 -12.35398 -11.92599 -11.72300 -11.66780 -11.51939 -11.35286 -11.21260 -11.06761 -10.83980 -10.59012 -10.36420 -10.27483 -9.98764 -9.58435 -9.38675 -9.18218 -9.06213 -7.45085 -7.33260 -6.76674 -4.36390 2.69983 3.06699 3.10077 3.10766 3.14725 3.62738 3.92449 4.11401 4.60637 4.75643 4.78643 4.94575 5.15058 5.31655 5.46544 5.53377 5.63500 5.71682 5.78892 5.82987 5.85135 5.92873 5.95158 6.14523 6.20577 6.28306 6.39767 6.42115 6.96112 7.07220 7.29554 7.37750 7.62198 7.72608 7.89611 8.05564 8.13695 8.29888 8.64204 8.88885 8.97673 10.17516 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042608 B = 0.003599 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.002625 B = 7778.039570 C = 8081.825268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.115 3.885 10 C -0.230 4.230 11 C -0.070 4.070 12 C -0.224 4.224 13 C 0.129 3.871 14 O -0.384 6.384 15 C 0.063 3.937 16 C -0.089 4.089 17 C -0.150 4.150 18 C -0.182 4.182 19 C -0.181 4.181 20 C -0.080 4.080 21 C -0.170 4.170 22 H 0.281 0.719 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.619 -11.461 -1.616 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.112 3.888 10 C -0.249 4.249 11 C -0.088 4.088 12 C -0.225 4.225 13 C 0.054 3.946 14 O -0.304 6.304 15 C -0.014 4.014 16 C -0.126 4.126 17 C -0.168 4.168 18 C -0.219 4.219 19 C -0.217 4.217 20 C -0.099 4.099 21 C -0.189 4.189 22 H 0.092 0.908 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.859 -11.177 -1.438 13.192 hybrid contribution 0.299 0.551 -0.169 0.649 sum -6.559 -10.626 -1.607 12.591 Atomic orbital electron populations 1.69840 1.07614 1.29279 1.34685 1.25941 0.94729 1.01383 0.92249 0.86298 0.80493 0.80526 0.79325 1.19250 1.20300 1.18596 1.19635 0.98176 0.91269 1.39947 0.90342 1.17658 0.90950 0.92042 0.88115 1.20955 1.04051 0.92800 1.07129 1.20368 0.95378 0.96499 0.96553 1.18782 1.00808 0.92476 1.10423 1.21093 0.88056 0.95162 0.90279 1.88080 1.50083 1.41501 1.50710 1.22344 0.93430 0.88210 0.97453 1.21076 0.96911 0.95429 0.99189 1.22214 0.91283 0.99640 1.03666 1.23073 0.97065 1.02571 0.99199 1.22973 1.04100 1.00959 0.93716 1.20533 0.97696 0.92578 0.99098 1.21294 0.99653 0.96627 1.01309 0.90806 0.88917 0.89484 0.94487 0.94414 0.93990 0.94096 0.90784 0.90997 0.87824 0.88626 0.89004 0.88919 0.88668 0.89498 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.66 10.95 55.55 0.61 -20.06 16 2 C 0.08 1.90 5.14 -17.34 -0.09 1.82 16 3 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.38 9.05 -37.74 -0.34 -12.72 16 8 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 9 C 0.11 3.13 5.57 -106.82 -0.60 2.54 16 10 C -0.23 -5.81 9.80 -38.88 -0.38 -6.19 16 11 C -0.07 -1.63 9.67 -39.66 -0.38 -2.02 16 12 C -0.22 -5.17 5.53 -104.33 -0.58 -5.74 16 13 C 0.13 2.48 6.05 36.01 0.22 2.69 16 14 O -0.38 -7.41 10.33 -35.23 -0.36 -7.77 16 15 C 0.06 0.90 5.90 37.16 0.22 1.12 16 16 C -0.09 -1.13 5.87 -26.73 -0.16 -1.28 16 17 C -0.15 -1.53 5.73 -90.62 -0.52 -2.05 16 18 C -0.18 -1.68 10.18 -26.70 -0.27 -1.95 16 19 C -0.18 -1.63 10.25 -26.70 -0.27 -1.90 16 20 C -0.08 -1.96 9.67 -39.66 -0.38 -2.34 16 21 C -0.17 -4.52 8.70 -38.87 -0.34 -4.86 16 22 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 23 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 24 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 25 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 26 H 0.04 0.66 8.08 -51.93 -0.42 0.25 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 31 H 0.10 0.97 8.08 -51.93 -0.42 0.56 16 32 H 0.10 0.89 8.03 -51.93 -0.42 0.48 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 37 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -28.36 314.84 -9.68 -38.04 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.76 Total: 4.23 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: -3.87 Total: -32.89 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.61 Total: -20.06 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.36 Total: -7.77 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.36 -9.68 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399008488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.960 kcal (2) G-P(sol) polarization free energy of solvation -28.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds