Wall clock time and date at job start Mon Mar 30 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48502 * 109.47151 * 269.99976 * 3 2 1 5 5 H 1.48497 * 109.47468 * 29.99964 * 3 2 1 6 6 H 1.48500 * 109.47187 * 149.99978 * 3 2 1 7 7 C 1.39945 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00051 * 197.84871 * 7 2 1 9 9 C 1.41402 * 119.99874 * 17.84641 * 7 2 1 10 10 C 1.40710 * 120.24466 * 204.38501 * 9 7 2 11 11 C 1.37615 * 119.74272 * 180.02562 * 10 9 7 12 12 C 1.38629 * 120.25256 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75224 * 179.97438 * 12 11 10 14 14 O 1.42892 * 109.47443 * 90.00057 * 13 12 11 15 15 C 1.42894 * 114.00538 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47652 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47490 * 179.97438 * 16 15 14 18 18 C 1.52995 * 117.50163 * 243.74570 * 17 16 15 19 19 C 1.53001 * 117.50309 * 175.08581 * 17 16 15 20 20 C 1.38633 * 120.49935 * 0.25256 * 12 11 10 21 21 C 1.37626 * 120.24985 * 359.44856 * 20 12 11 22 22 H 0.97002 * 120.00394 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.12782 * 0.02562 * 10 9 7 24 24 H 1.08003 * 119.87400 * 180.02562 * 11 10 9 25 25 H 1.08999 * 109.47081 * 329.99647 * 13 12 11 26 26 H 1.09003 * 109.47076 * 210.00350 * 13 12 11 27 27 H 1.09004 * 109.46873 * 299.99984 * 15 14 13 28 28 H 1.09003 * 109.47063 * 59.99751 * 15 14 13 29 29 H 1.09004 * 109.46898 * 299.99881 * 16 15 14 30 30 H 1.09003 * 109.47161 * 59.99724 * 16 15 14 31 31 H 1.09007 * 115.54897 * 29.41198 * 17 16 15 32 32 H 1.09003 * 117.49544 * 0.02562 * 18 17 16 33 33 H 1.09005 * 117.49818 * 145.01548 * 18 17 16 34 34 H 1.09000 * 117.49974 * 214.98314 * 19 17 16 35 35 H 1.09000 * 117.49533 * 0.02562 * 19 17 16 36 36 H 1.08005 * 119.88004 * 179.70266 * 20 12 11 37 37 H 1.07997 * 120.13123 * 180.27487 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0491 -1.2342 0.2872 9 6 1.3521 -2.4072 -0.3742 10 6 1.8259 -3.6498 0.0856 11 6 1.1800 -4.8067 -0.2860 12 6 0.0668 -4.7512 -1.1104 13 6 -0.6316 -6.0252 -1.5108 14 8 -1.6490 -6.3312 -0.5553 15 6 -2.3755 -7.5277 -0.8427 16 6 -3.4330 -7.7548 0.2394 17 6 -4.2112 -9.0355 -0.0687 18 6 -5.7056 -8.8995 -0.3673 19 6 -5.2420 -9.5011 0.9617 20 6 -0.4053 -3.5330 -1.5740 21 6 0.2212 -2.3628 -1.2104 22 1 -0.4851 0.8400 -0.0004 23 1 2.6932 -3.6954 0.7276 24 1 1.5416 -5.7616 0.0661 25 1 0.0913 -6.8403 -1.5456 26 1 -1.0834 -5.8981 -2.4946 27 1 -2.8635 -7.4322 -1.8127 28 1 -1.6886 -8.3738 -0.8633 29 1 -2.9453 -7.8501 1.2096 30 1 -4.1198 -6.9086 0.2596 31 1 -3.6578 -9.8033 -0.6095 32 1 -6.1342 -7.8975 -0.3446 33 1 -6.1354 -9.5781 -1.1041 34 1 -5.3669 -10.5752 1.0987 35 1 -5.3659 -8.8947 1.8589 36 1 -1.2705 -3.5017 -2.2198 37 1 -0.1509 -1.4145 -1.5691 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399008488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:14 Heat of formation + Delta-G solvation = -35.391882 kcal Electronic energy + Delta-G solvation = -16559.417012 eV Core-core repulsion = 13879.909685 eV Total energy + Delta-G solvation = -2679.507327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.79391 -38.91753 -37.89444 -35.64490 -32.77520 -31.39186 -31.12754 -28.45082 -25.32803 -24.17427 -23.20028 -22.91592 -21.89499 -21.25692 -19.24743 -17.39970 -17.26120 -17.05819 -16.60987 -16.12889 -15.66741 -15.38692 -14.94060 -14.61491 -14.16640 -13.96374 -13.80856 -13.44884 -12.89204 -12.82008 -12.60045 -12.44918 -12.36032 -12.32198 -12.16952 -11.90232 -11.44846 -11.28595 -11.15002 -11.03472 -10.81913 -10.43746 -9.40273 -9.28623 -8.66075 -6.37244 0.86884 1.12783 1.37838 1.49543 1.51887 2.20042 2.57658 2.87090 3.07988 3.73228 3.94766 3.99452 4.05040 4.21737 4.25956 4.29293 4.37417 4.50315 4.56947 4.59265 4.63305 4.76995 4.79825 4.97825 5.02306 5.05784 5.10534 5.14295 5.27494 5.34558 5.38018 5.43790 5.68297 5.91996 6.07758 6.20717 6.35380 6.44431 6.67315 6.91109 7.00738 8.31013 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042608 B = 0.003599 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.002625 B = 7778.039570 C = 8081.825268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.033 3.967 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.499 4.499 8 H 0.078 0.922 9 C 0.082 3.918 10 C -0.246 4.246 11 C -0.073 4.073 12 C -0.222 4.222 13 C 0.133 3.867 14 O -0.414 6.414 15 C 0.059 3.941 16 C -0.086 4.086 17 C -0.158 4.158 18 C -0.181 4.181 19 C -0.177 4.177 20 C -0.088 4.088 21 C -0.194 4.194 22 H 0.289 0.711 23 H 0.100 0.900 24 H 0.117 0.883 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 -12.804 -1.974 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.528 4.528 8 H 0.096 0.904 9 C 0.080 3.920 10 C -0.266 4.266 11 C -0.091 4.091 12 C -0.223 4.223 13 C 0.058 3.942 14 O -0.335 6.335 15 C -0.017 4.017 16 C -0.123 4.123 17 C -0.176 4.176 18 C -0.218 4.218 19 C -0.214 4.214 20 C -0.106 4.106 21 C -0.213 4.213 22 H 0.100 0.900 23 H 0.118 0.882 24 H 0.135 0.865 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.202 -12.546 -1.797 14.578 hybrid contribution 0.315 0.812 -0.057 0.873 sum -6.887 -11.734 -1.854 13.732 Atomic orbital electron populations 1.69893 1.09158 1.30697 1.35184 1.26839 0.95504 1.04745 0.91106 0.85143 0.79021 0.75571 0.79593 1.18546 1.19196 1.18095 1.19891 0.98459 0.92483 1.41925 0.90412 1.18027 0.91780 0.93210 0.88995 1.21185 1.04710 0.93064 1.07623 1.20720 0.95179 0.97120 0.96093 1.19278 1.00469 0.93862 1.08710 1.21028 0.88688 0.93761 0.90738 1.88006 1.50484 1.43886 1.51077 1.22588 0.93731 0.86909 0.98485 1.21038 0.96487 0.96412 0.98395 1.22160 0.91653 0.98768 1.04997 1.23151 0.96164 1.02738 0.99758 1.23065 1.02939 1.01918 0.93434 1.20803 0.98022 0.92577 0.99240 1.21278 1.00570 0.96933 1.02544 0.90028 0.88194 0.86527 0.92168 0.92796 0.92809 0.92301 0.91688 0.92281 0.86592 0.89215 0.87460 0.87267 0.89041 0.87749 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.28 10.95 21.83 0.24 -44.04 16 2 C 0.03 1.71 5.14 85.26 0.44 2.15 16 3 Si 0.99 38.73 29.59 68.60 2.03 40.76 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.50 -27.62 9.05 23.46 0.21 -27.41 16 8 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 9 C 0.08 4.62 5.57 -21.29 -0.12 4.50 16 10 C -0.25 -12.62 9.80 22.73 0.22 -12.40 16 11 C -0.07 -3.36 9.67 22.22 0.21 -3.14 16 12 C -0.22 -10.01 5.53 -19.68 -0.11 -10.12 16 13 C 0.13 4.76 6.05 71.24 0.43 5.19 16 14 O -0.41 -15.19 10.33 -148.98 -1.54 -16.73 16 15 C 0.06 1.56 5.90 71.98 0.42 1.98 16 16 C -0.09 -2.06 5.87 30.59 0.18 -1.88 16 17 C -0.16 -2.87 5.73 -10.80 -0.06 -2.93 16 18 C -0.18 -2.95 10.18 30.62 0.31 -2.64 16 19 C -0.18 -2.81 10.25 30.62 0.31 -2.49 16 20 C -0.09 -4.31 9.67 22.22 0.21 -4.09 16 21 C -0.19 -10.66 8.70 22.73 0.20 -10.46 16 22 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 23 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 24 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 25 H 0.06 1.87 8.08 -2.39 -0.02 1.86 16 26 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 27 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.54 7.87 -2.39 -0.02 1.52 16 31 H 0.12 1.83 8.08 -2.38 -0.02 1.82 16 32 H 0.09 1.56 8.03 -2.39 -0.02 1.54 16 33 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.10 5.83 6.16 -2.91 -0.02 5.81 16 Total: -1.00 -61.91 314.84 4.63 -57.28 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 1.03 Total: 26.47 kcal Atomic # 6 Polarization: -66.61 SS G_CDS: 2.87 Total: -63.74 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.24 Total: -44.04 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -1.54 Total: -16.73 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -61.91 4.63 -57.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399008488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.888 kcal (2) G-P(sol) polarization free energy of solvation -61.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds