Wall clock time and date at job start Mon Mar 30 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00085 * 2 1 4 4 C 1.50701 * 120.00083 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47397 * 94.99648 * 4 2 1 6 6 O 1.42900 * 109.47190 * 180.02562 * 5 4 2 7 7 C 1.42892 * 114.00145 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47491 * 179.97438 * 7 6 5 9 9 C 1.38632 * 119.74855 * 269.73175 * 8 7 6 10 10 C 1.37622 * 120.24185 * 179.71996 * 9 8 7 11 11 C 1.40711 * 119.74669 * 0.56508 * 10 9 8 12 12 C 1.41400 * 120.24519 * 179.68031 * 11 10 9 13 13 H 1.07993 * 120.00417 * 204.40825 * 12 11 10 14 14 C 1.39949 * 119.99722 * 24.41101 * 12 11 10 15 15 N 1.30829 * 120.00062 * 17.84366 * 14 12 11 16 16 Si 1.86798 * 120.00043 * 197.84420 * 14 12 11 17 17 H 1.48498 * 109.46821 * 90.00230 * 16 14 12 18 18 H 1.48501 * 109.47257 * 209.99803 * 16 14 12 19 19 H 1.48498 * 109.47318 * 330.00157 * 16 14 12 20 20 C 1.40712 * 119.51307 * 359.70755 * 11 10 9 21 21 C 1.37615 * 119.74605 * 359.97438 * 20 11 10 22 22 H 1.08004 * 119.99792 * 359.97438 * 1 2 3 23 23 H 1.08003 * 119.99721 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46964 * 240.00542 * 3 2 1 25 25 H 1.09004 * 109.46952 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.47159 * 119.99850 * 3 2 1 27 27 H 1.09000 * 109.46858 * 334.99155 * 4 2 1 28 28 H 1.09004 * 109.47081 * 214.99793 * 4 2 1 29 29 H 1.08997 * 109.46846 * 59.99639 * 5 4 2 30 30 H 1.09000 * 109.46703 * 299.99888 * 5 4 2 31 31 H 1.09007 * 109.47051 * 59.99495 * 7 6 5 32 32 H 1.08996 * 109.47108 * 299.99920 * 7 6 5 33 33 H 1.08000 * 119.87692 * 359.96552 * 9 8 7 34 34 H 1.08002 * 120.12182 * 180.27799 * 10 9 8 35 35 H 0.96994 * 119.99970 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.12698 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.87918 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6834 -1.4377 6 8 3.1414 -2.9212 -1.4383 7 6 3.5309 -3.3669 -2.7388 8 6 4.2731 -4.6732 -2.6209 9 6 5.6508 -4.6702 -2.4671 10 6 6.3381 -5.8570 -2.3526 11 6 5.6384 -7.0767 -2.4042 12 6 6.3348 -8.3024 -2.2944 13 1 5.9103 -9.2039 -2.7110 14 6 7.5741 -8.3474 -1.6459 15 7 7.9315 -7.3729 -0.8495 16 14 8.7182 -9.7989 -1.9174 17 1 9.6110 -9.5166 -3.0699 18 1 9.5377 -10.0181 -0.6985 19 1 7.9155 -11.0159 -2.1996 20 6 4.2407 -7.0678 -2.5663 21 6 3.5733 -5.8690 -2.6721 22 1 -0.5400 0.9354 0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 2.6901 1.3629 -0.8900 25 1 1.3552 2.1336 -0.0005 26 1 2.6902 1.3629 0.8900 27 1 1.4386 -2.0856 0.4335 28 1 2.9743 -1.1991 0.5889 29 1 3.0522 -0.9028 -1.8717 30 1 1.5166 -1.7894 -2.0271 31 1 4.1793 -2.6214 -3.1994 32 1 2.6434 -3.5073 -3.3558 33 1 6.1863 -3.7329 -2.4329 34 1 7.4109 -5.8522 -2.2283 35 1 8.7903 -7.4043 -0.3998 36 1 3.6938 -7.9981 -2.6076 37 1 2.5005 -5.8596 -2.7962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399178808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:19 Heat of formation + Delta-G solvation = -30.746484 kcal Electronic energy + Delta-G solvation = -16596.502073 eV Core-core repulsion = 13917.196185 eV Total energy + Delta-G solvation = -2679.305887 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.17636 -37.22514 -35.89783 -33.74057 -30.87424 -29.44365 -29.19727 -27.38909 -26.61055 -23.53975 -22.89185 -20.98238 -19.97782 -18.44862 -17.30006 -16.13189 -15.80822 -15.35189 -14.97366 -14.54709 -14.14573 -13.91773 -13.56524 -13.34631 -12.90097 -12.37452 -12.21972 -11.93330 -11.86269 -11.59208 -11.33342 -11.21998 -11.14101 -10.92110 -10.82676 -10.54921 -10.27782 -9.59759 -9.39831 -9.19346 -9.18606 -9.05928 -7.45587 -7.33737 -6.77139 -4.36814 2.06678 2.70231 3.06447 3.09724 3.10498 3.14916 3.92135 4.19017 4.66103 4.77681 4.96440 5.22767 5.38469 5.40473 5.48394 5.59791 5.71927 5.77161 5.78904 5.80910 5.86492 5.99161 6.10318 6.19708 6.38743 6.41505 6.51650 6.75636 6.95676 7.06832 7.29047 7.37262 7.61723 7.70735 7.88787 8.05136 8.13131 8.29421 8.63767 8.88437 8.97218 10.17053 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.046777 B = 0.003642 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.447240 B = 7686.491047 C = 7931.293836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.120 4.120 4 C -0.087 4.087 5 C 0.067 3.933 6 O -0.383 6.383 7 C 0.129 3.871 8 C -0.224 4.224 9 C -0.080 4.080 10 C -0.170 4.170 11 C 0.115 3.885 12 C -0.461 4.461 13 H 0.079 0.921 14 C 0.075 3.925 15 N -0.789 5.789 16 Si 0.909 3.091 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.230 4.230 21 C -0.069 4.069 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.281 0.719 36 H 0.093 0.907 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 11.072 0.069 13.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.121 4.121 3 C -0.177 4.177 4 C -0.124 4.124 5 C -0.010 4.010 6 O -0.303 6.303 7 C 0.054 3.946 8 C -0.225 4.225 9 C -0.099 4.099 10 C -0.189 4.189 11 C 0.113 3.887 12 C -0.490 4.490 13 H 0.097 0.903 14 C -0.143 4.143 15 N -0.414 5.414 16 Si 0.734 3.266 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.249 4.249 21 C -0.088 4.088 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.988 11.035 0.402 13.068 hybrid contribution 0.448 -0.446 -0.200 0.663 sum -6.540 10.589 0.202 12.448 Atomic orbital electron populations 1.23745 0.95165 1.01833 1.02706 1.21698 0.95405 0.95555 0.99417 1.20898 1.00243 0.94167 1.02408 1.20568 1.00790 0.94142 0.96887 1.22298 0.95265 0.87321 0.96165 1.88085 1.74700 1.37308 1.30234 1.21097 0.96018 0.94131 0.83331 1.18779 0.93509 0.91834 1.18404 1.20529 0.93150 0.96869 0.99334 1.21292 0.99744 0.91377 1.06481 1.17656 0.90749 0.93274 0.87063 1.19637 1.02047 0.95464 1.31870 0.90335 1.25945 0.98225 0.97377 0.92766 1.69840 1.20808 1.31628 1.19120 0.86295 0.80017 0.81620 0.78690 1.19247 1.20296 1.18594 1.20954 0.94419 0.95671 1.13887 1.20371 0.96833 0.92577 0.99006 0.88542 0.88383 0.91488 0.92121 0.91431 0.90497 0.90396 0.94002 0.94035 0.94406 0.94474 0.89493 0.86367 0.90799 0.88917 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.94 13.90 29.01 0.40 -1.53 16 2 C -0.12 -1.29 5.31 -101.07 -0.54 -1.83 16 3 C -0.12 -1.08 10.12 36.01 0.36 -0.71 16 4 C -0.09 -1.11 5.75 -27.88 -0.16 -1.27 16 5 C 0.07 0.97 5.92 37.16 0.22 1.19 16 6 O -0.38 -7.38 10.33 -35.23 -0.36 -7.74 16 7 C 0.13 2.48 6.05 36.01 0.22 2.69 16 8 C -0.22 -5.16 5.53 -104.33 -0.58 -5.74 16 9 C -0.08 -1.95 9.67 -39.66 -0.38 -2.33 16 10 C -0.17 -4.51 8.70 -38.87 -0.34 -4.85 16 11 C 0.12 3.13 5.57 -106.83 -0.60 2.54 16 12 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16 13 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 14 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 15 N -0.79 -20.62 10.95 55.55 0.61 -20.01 16 16 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 C -0.23 -5.80 9.80 -38.88 -0.38 -6.18 16 21 C -0.07 -1.63 9.67 -39.66 -0.38 -2.01 16 22 H 0.10 0.79 7.83 -52.48 -0.41 0.38 16 23 H 0.10 0.95 7.99 -52.48 -0.42 0.53 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.46 7.78 -51.93 -0.40 0.05 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.02 7.99 -51.93 -0.41 0.60 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.12 3.22 6.16 -52.49 -0.32 2.89 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 317.38 15.07 4.78 4.78 Total: -1.00 -28.33 317.38 -8.33 -36.66 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.74 Total: 3.58 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: -2.58 Total: -30.94 kcal Atomic # 7 Polarization: -20.62 SS G_CDS: 0.61 Total: -20.01 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.36 Total: -7.74 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.33 -8.33 -36.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399178808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.915 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds