Wall clock time and date at job start Mon Mar 30 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00085 * 2 1 4 4 C 1.50701 * 120.00083 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47397 * 94.99648 * 4 2 1 6 6 O 1.42900 * 109.47190 * 180.02562 * 5 4 2 7 7 C 1.42892 * 114.00145 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47491 * 179.97438 * 7 6 5 9 9 C 1.38632 * 119.74855 * 269.73175 * 8 7 6 10 10 C 1.37622 * 120.24185 * 179.71996 * 9 8 7 11 11 C 1.40711 * 119.74669 * 0.56508 * 10 9 8 12 12 C 1.41400 * 120.24519 * 179.68031 * 11 10 9 13 13 H 1.07993 * 120.00417 * 204.40825 * 12 11 10 14 14 C 1.39949 * 119.99722 * 24.41101 * 12 11 10 15 15 N 1.30829 * 120.00062 * 17.84366 * 14 12 11 16 16 Si 1.86798 * 120.00043 * 197.84420 * 14 12 11 17 17 H 1.48498 * 109.46821 * 90.00230 * 16 14 12 18 18 H 1.48501 * 109.47257 * 209.99803 * 16 14 12 19 19 H 1.48498 * 109.47318 * 330.00157 * 16 14 12 20 20 C 1.40712 * 119.51307 * 359.70755 * 11 10 9 21 21 C 1.37615 * 119.74605 * 359.97438 * 20 11 10 22 22 H 1.08004 * 119.99792 * 359.97438 * 1 2 3 23 23 H 1.08003 * 119.99721 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46964 * 240.00542 * 3 2 1 25 25 H 1.09004 * 109.46952 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.47159 * 119.99850 * 3 2 1 27 27 H 1.09000 * 109.46858 * 334.99155 * 4 2 1 28 28 H 1.09004 * 109.47081 * 214.99793 * 4 2 1 29 29 H 1.08997 * 109.46846 * 59.99639 * 5 4 2 30 30 H 1.09000 * 109.46703 * 299.99888 * 5 4 2 31 31 H 1.09007 * 109.47051 * 59.99495 * 7 6 5 32 32 H 1.08996 * 109.47108 * 299.99920 * 7 6 5 33 33 H 1.08000 * 119.87692 * 359.96552 * 9 8 7 34 34 H 1.08002 * 120.12182 * 180.27799 * 10 9 8 35 35 H 0.96994 * 119.99970 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.12698 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.87918 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6834 -1.4377 6 8 3.1414 -2.9212 -1.4383 7 6 3.5309 -3.3669 -2.7388 8 6 4.2731 -4.6732 -2.6209 9 6 5.6508 -4.6702 -2.4671 10 6 6.3381 -5.8570 -2.3526 11 6 5.6384 -7.0767 -2.4042 12 6 6.3348 -8.3024 -2.2944 13 1 5.9103 -9.2039 -2.7110 14 6 7.5741 -8.3474 -1.6459 15 7 7.9315 -7.3729 -0.8495 16 14 8.7182 -9.7989 -1.9174 17 1 9.6110 -9.5166 -3.0699 18 1 9.5377 -10.0181 -0.6985 19 1 7.9155 -11.0159 -2.1996 20 6 4.2407 -7.0678 -2.5663 21 6 3.5733 -5.8690 -2.6721 22 1 -0.5400 0.9354 0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 2.6901 1.3629 -0.8900 25 1 1.3552 2.1336 -0.0005 26 1 2.6902 1.3629 0.8900 27 1 1.4386 -2.0856 0.4335 28 1 2.9743 -1.1991 0.5889 29 1 3.0522 -0.9028 -1.8717 30 1 1.5166 -1.7894 -2.0271 31 1 4.1793 -2.6214 -3.1994 32 1 2.6434 -3.5073 -3.3558 33 1 6.1863 -3.7329 -2.4329 34 1 7.4109 -5.8522 -2.2283 35 1 8.7903 -7.4043 -0.3998 36 1 3.6938 -7.9981 -2.6076 37 1 2.5005 -5.8596 -2.7962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399178808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:18 Heat of formation + Delta-G solvation = -44.360636 kcal Electronic energy + Delta-G solvation = -16597.092427 eV Core-core repulsion = 13917.196185 eV Total energy + Delta-G solvation = -2679.896241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.79306 -38.72979 -36.95924 -35.60157 -32.55852 -31.21154 -30.61202 -28.40234 -28.04838 -25.27497 -24.01089 -22.91750 -21.82542 -19.30202 -19.24900 -17.42650 -17.27742 -16.95946 -16.49197 -15.71809 -15.64420 -15.31830 -14.87133 -14.71312 -14.26630 -13.86863 -13.75875 -13.54383 -13.34910 -12.87873 -12.76155 -12.57744 -12.51364 -12.32544 -12.05026 -12.00080 -11.88266 -11.42848 -11.27827 -11.04510 -10.47759 -9.97161 -9.40373 -9.28745 -8.66191 -6.37358 0.86035 1.12596 1.28171 1.37935 1.50109 1.51929 2.20050 2.59707 3.09458 3.75669 3.92265 4.06217 4.18715 4.24623 4.31797 4.41782 4.48100 4.56461 4.59558 4.63336 4.70725 4.83814 4.93742 5.02070 5.05097 5.07006 5.14089 5.15014 5.34382 5.43584 5.68131 5.72305 5.91699 5.96602 6.07626 6.20396 6.35215 6.41397 6.67178 6.90993 7.00566 8.30901 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.046777 B = 0.003642 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.447240 B = 7686.491047 C = 7931.293836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 C -0.120 4.120 4 C -0.085 4.085 5 C 0.064 3.936 6 O -0.412 6.412 7 C 0.133 3.867 8 C -0.222 4.222 9 C -0.087 4.087 10 C -0.194 4.194 11 C 0.083 3.917 12 C -0.499 4.499 13 H 0.078 0.922 14 C 0.033 3.967 15 N -0.823 5.823 16 Si 0.986 3.014 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.257 1.257 20 C -0.246 4.246 21 C -0.073 4.073 22 H 0.116 0.884 23 H 0.096 0.904 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.289 0.711 36 H 0.100 0.900 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.086 12.155 -0.229 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.135 4.135 3 C -0.176 4.176 4 C -0.122 4.122 5 C -0.012 4.012 6 O -0.333 6.333 7 C 0.058 3.942 8 C -0.223 4.223 9 C -0.106 4.106 10 C -0.213 4.213 11 C 0.080 3.920 12 C -0.528 4.528 13 H 0.096 0.904 14 C -0.182 4.182 15 N -0.449 5.449 16 Si 0.807 3.193 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.181 1.181 20 C -0.266 4.266 21 C -0.091 4.091 22 H 0.134 0.866 23 H 0.114 0.886 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.869 12.138 0.104 14.466 hybrid contribution 0.575 -0.650 -0.087 0.872 sum -7.295 11.488 0.017 13.608 Atomic orbital electron populations 1.23937 0.94924 1.02737 1.00995 1.21689 0.95731 0.95133 1.00912 1.20916 1.00518 0.93698 1.02495 1.20538 1.00587 0.95280 0.95802 1.22522 0.95496 0.85729 0.97488 1.88012 1.75561 1.39571 1.30109 1.21032 0.96860 0.92461 0.83863 1.19267 0.93331 0.93882 1.15860 1.20801 0.94161 0.96825 0.98786 1.21277 0.99262 0.92374 1.08407 1.18023 0.91920 0.93871 0.88153 1.19892 1.03794 0.95508 1.33564 0.90424 1.26840 0.99182 1.00442 0.91722 1.69893 1.21611 1.33636 1.19750 0.85143 0.77576 0.77681 0.78928 1.18542 1.19183 1.18112 1.21181 0.94043 0.96978 1.14382 1.20720 0.98352 0.92066 0.97993 0.86594 0.88571 0.91449 0.90533 0.91341 0.91384 0.91269 0.92685 0.92790 0.92718 0.92285 0.87678 0.87948 0.90014 0.88217 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 13.90 67.78 0.94 -2.29 16 2 C -0.13 -2.60 5.31 -16.49 -0.09 -2.69 16 3 C -0.12 -1.86 10.12 71.24 0.72 -1.14 16 4 C -0.08 -2.07 5.75 29.85 0.17 -1.90 16 5 C 0.06 1.72 5.92 71.98 0.43 2.15 16 6 O -0.41 -15.11 10.33 -148.98 -1.54 -16.65 16 7 C 0.13 4.77 6.05 71.24 0.43 5.20 16 8 C -0.22 -10.01 5.53 -19.67 -0.11 -10.12 16 9 C -0.09 -4.26 9.67 22.22 0.21 -4.04 16 10 C -0.19 -10.63 8.70 22.73 0.20 -10.43 16 11 C 0.08 4.64 5.57 -21.29 -0.12 4.52 16 12 C -0.50 -27.59 9.05 23.46 0.21 -27.37 16 13 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 14 C 0.03 1.71 5.14 85.26 0.44 2.15 16 15 N -0.82 -44.15 10.95 21.83 0.24 -43.91 16 16 Si 0.99 38.66 29.60 68.60 2.03 40.69 16 17 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 18 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 C -0.25 -12.62 9.80 22.73 0.22 -12.40 16 21 C -0.07 -3.37 9.67 22.22 0.21 -3.15 16 22 H 0.12 1.52 7.83 -2.91 -0.02 1.50 16 23 H 0.10 1.66 7.99 -2.91 -0.02 1.64 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 0.94 7.78 -2.38 -0.02 0.92 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.74 7.99 -2.39 -0.02 1.73 16 28 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 32 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 33 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.10 5.83 6.16 -2.91 -0.02 5.81 16 35 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 36 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 37 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -61.72 317.38 5.63 -56.09 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 1.02 Total: 25.29 kcal Atomic # 6 Polarization: -65.38 SS G_CDS: 3.88 Total: -61.51 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.24 Total: -43.91 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -1.54 Total: -16.65 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -61.72 5.63 -56.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399178808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.731 kcal (2) G-P(sol) polarization free energy of solvation -61.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds