Wall clock time and date at job start Mon Mar 30 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36454 * 119.89837 * 2 1 4 4 C 1.40824 * 119.80547 * 180.02562 * 3 2 1 5 5 C 1.41211 * 120.17956 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99696 * 331.66283 * 5 4 3 7 7 C 1.39893 * 120.00464 * 151.66756 * 5 4 3 8 8 N 1.30871 * 120.00363 * 164.73796 * 7 5 4 9 9 Si 1.86804 * 119.99633 * 344.74345 * 7 5 4 10 10 H 1.48496 * 109.47185 * 95.31863 * 9 7 5 11 11 H 1.48503 * 109.46811 * 215.31972 * 9 7 5 12 12 H 1.48500 * 109.46978 * 335.31507 * 9 7 5 13 13 C 1.40854 * 119.64165 * 359.97438 * 4 3 2 14 14 C 1.36421 * 119.81060 * 359.72482 * 13 4 3 15 15 C 1.39284 * 119.90889 * 179.97438 * 2 1 3 16 16 O 1.35671 * 119.81812 * 359.97438 * 15 2 1 17 17 C 1.42907 * 116.99965 * 185.63994 * 16 15 2 18 18 C 1.54887 * 110.48660 * 270.88177 * 17 16 15 19 19 C 1.54890 * 102.74757 * 203.37569 * 18 17 16 20 20 C 1.54265 * 104.19397 * 37.94807 * 19 18 17 21 21 C 1.53877 * 106.59961 * 336.38515 * 20 19 18 22 22 H 1.09001 * 109.47351 * 270.01868 * 1 2 3 23 23 H 1.08998 * 109.47505 * 30.02167 * 1 2 3 24 24 H 1.09000 * 109.46859 * 150.02103 * 1 2 3 25 25 H 1.07993 * 120.10439 * 359.97438 * 3 2 1 26 26 H 0.97005 * 120.00549 * 180.02562 * 8 7 5 27 27 H 1.07999 * 120.09306 * 180.02562 * 13 4 3 28 28 H 1.07999 * 119.90554 * 180.27357 * 14 13 4 29 29 H 1.09004 * 110.53362 * 33.49687 * 17 16 15 30 30 H 1.09000 * 110.75133 * 85.06396 * 18 17 16 31 31 H 1.09001 * 110.75847 * 321.69402 * 18 17 16 32 32 H 1.08993 * 110.48978 * 279.26491 * 19 18 17 33 33 H 1.09003 * 110.48344 * 156.62090 * 19 18 17 34 34 H 1.08995 * 110.03508 * 95.67031 * 20 19 18 35 35 H 1.09006 * 110.03117 * 217.05668 * 20 19 18 36 36 H 1.08999 * 110.03276 * 119.28558 * 21 20 19 37 37 H 1.08998 * 110.03573 * 240.67184 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1829 0.0000 4 6 3.5954 1.1807 -0.0005 5 6 4.3073 2.4002 -0.0011 6 1 3.8683 3.2815 -0.4451 7 6 5.5811 2.4670 0.5733 8 7 6.3608 3.4870 0.3197 9 14 6.1692 1.0999 1.7024 10 1 6.9681 0.1218 0.9210 11 1 7.0107 1.6768 2.7814 12 1 4.9964 0.4144 2.3023 13 6 4.2901 -0.0447 -0.0005 14 6 3.5948 -1.2184 0.0057 15 6 2.2015 -1.2073 0.0005 16 8 1.5176 -2.3790 0.0016 17 6 2.2849 -3.5781 0.1272 18 6 2.7173 -4.0936 -1.2678 19 6 2.9607 -5.6021 -1.0144 20 6 1.8460 -6.0044 -0.0268 21 6 1.4163 -4.7175 0.6991 22 1 -0.3634 0.0003 1.0277 23 1 -0.3634 0.8897 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6473 2.1182 -0.0004 26 1 7.2442 3.5332 0.7177 27 1 5.3700 -0.0549 -0.0005 28 1 4.1259 -2.1588 0.0102 29 1 3.1571 -3.4094 0.7589 30 1 3.6350 -3.6036 -1.5933 31 1 1.9207 -3.9481 -1.9975 32 1 3.9420 -5.7604 -0.5672 33 1 2.8685 -6.1648 -1.9434 34 1 1.0006 -6.4268 -0.5698 35 1 2.2278 -6.7296 0.6920 36 1 0.3624 -4.5153 0.5084 37 1 1.5890 -4.8177 1.7707 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687815336.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:32 Heat of formation + Delta-G solvation = -39.748222 kcal Electronic energy + Delta-G solvation = -17749.054001 eV Core-core repulsion = 15069.357769 eV Total energy + Delta-G solvation = -2679.696232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.51529 -37.63922 -35.69935 -33.48313 -31.81705 -29.77733 -28.65991 -27.80013 -26.21304 -24.47764 -21.67146 -20.67652 -20.33841 -19.55753 -17.60053 -17.02413 -15.79471 -15.45904 -14.79043 -14.55135 -13.96973 -13.76556 -13.28411 -12.98401 -12.78472 -12.59892 -12.33548 -12.01577 -11.94814 -11.64560 -11.37212 -11.23111 -11.08515 -10.77983 -10.66283 -10.57046 -10.51217 -10.16159 -9.95407 -9.75539 -9.42725 -9.03605 -7.72410 -7.09010 -6.88480 -4.35888 2.57337 2.63440 3.10670 3.22506 3.32833 3.99169 4.00430 4.48259 4.61512 4.67517 4.93247 5.35987 5.38577 5.46042 5.51436 5.61924 5.66390 5.77870 5.85206 5.87743 5.91704 6.01688 6.10360 6.16590 6.28516 6.29225 6.31813 6.39229 6.55748 6.70119 6.84731 7.05875 7.20586 7.50700 7.59054 7.83174 7.98351 8.33238 8.44084 8.72857 8.85522 10.14828 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.006623 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.852512 B = 4226.587725 C = 4906.665729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.074 4.074 3 C -0.179 4.179 4 C 0.073 3.927 5 C -0.447 4.447 6 H 0.089 0.911 7 C 0.082 3.918 8 N -0.816 5.816 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.244 1.244 13 C -0.212 4.212 14 C -0.150 4.150 15 C -0.003 4.003 16 O -0.314 6.314 17 C 0.084 3.916 18 C -0.147 4.147 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.120 4.120 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.107 0.893 26 H 0.283 0.717 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 -14.100 0.407 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.075 4.075 3 C -0.198 4.198 4 C 0.070 3.930 5 C -0.476 4.476 6 H 0.107 0.893 7 C -0.135 4.135 8 N -0.442 5.442 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.221 1.221 12 H -0.167 1.167 13 C -0.231 4.231 14 C -0.169 4.169 15 C -0.046 4.046 16 O -0.230 6.230 17 C 0.027 3.973 18 C -0.184 4.184 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.158 4.158 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.125 0.875 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.729 -13.929 0.408 15.067 hybrid contribution 0.879 -0.504 0.469 1.116 sum -4.850 -14.433 0.877 15.251 Atomic orbital electron populations 1.20523 0.92712 1.01242 1.00911 1.18632 0.94549 0.90739 1.03585 1.20543 0.93774 0.95303 1.10174 1.17702 0.91885 0.92663 0.90768 1.19388 0.98897 0.96477 1.32813 0.89262 1.26115 0.95370 0.96379 0.95668 1.69694 1.08344 1.29899 1.36241 0.86337 0.79541 0.80516 0.79733 1.20019 1.22107 1.16687 1.20571 0.97993 0.92570 1.11990 1.20497 0.92815 0.97717 1.05879 1.18293 0.89794 0.84347 1.12178 1.85869 1.35224 1.11926 1.89976 1.23035 0.94278 0.84109 0.95922 1.23020 1.02104 0.95203 0.98113 1.22280 0.98670 0.96050 0.99175 1.22071 0.98601 0.96968 0.98167 1.22142 1.00900 0.93158 0.99602 0.92672 0.92753 0.92290 0.87453 0.90628 0.88234 0.88123 0.91091 0.91126 0.90564 0.91622 0.91546 0.91675 0.91813 0.90589 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.78 36.01 0.35 -1.37 16 2 C -0.07 -1.62 5.86 -104.87 -0.61 -2.24 16 3 C -0.18 -4.22 9.38 -39.25 -0.37 -4.59 16 4 C 0.07 1.87 5.18 -106.80 -0.55 1.32 16 5 C -0.45 -12.28 9.59 -37.83 -0.36 -12.64 16 6 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 7 C 0.08 2.19 5.45 -17.34 -0.09 2.10 16 8 N -0.82 -22.19 13.93 55.54 0.77 -21.42 16 9 Si 0.91 21.26 24.39 -169.99 -4.15 17.12 16 10 H -0.27 -6.19 6.73 56.52 0.38 -5.81 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.24 -5.83 6.62 56.52 0.37 -5.45 16 13 C -0.21 -5.21 6.95 -39.25 -0.27 -5.49 16 14 C -0.15 -3.34 8.76 -39.83 -0.35 -3.69 16 15 C 0.00 -0.06 6.66 -38.79 -0.26 -0.32 16 16 O -0.31 -6.00 8.87 -18.71 -0.17 -6.17 16 17 C 0.08 1.30 2.68 -25.07 -0.07 1.24 16 18 C -0.15 -2.03 6.37 -24.74 -0.16 -2.19 16 19 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 20 C -0.12 -1.22 6.80 -25.61 -0.17 -1.40 16 21 C -0.12 -1.50 6.56 -25.61 -0.17 -1.66 16 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 24 H 0.06 1.01 7.52 -51.93 -0.39 0.61 16 25 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 26 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 27 H 0.10 2.44 4.30 -52.49 -0.23 2.22 16 28 H 0.10 1.98 5.44 -52.49 -0.29 1.70 16 29 H 0.07 1.15 6.25 -51.93 -0.32 0.82 16 30 H 0.07 1.03 7.58 -51.93 -0.39 0.63 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 293.11 15.07 4.42 4.42 Total: -1.00 -28.10 293.11 -7.83 -35.93 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.45 Total: 2.56 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: -3.26 Total: -32.44 kcal Atomic # 7 Polarization: -22.19 SS G_CDS: 0.77 Total: -21.42 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.17 Total: -6.17 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.15 Total: 17.12 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.10 -7.83 -35.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687815336.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.823 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds