Wall clock time and date at job start Mon Mar 30 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36454 * 119.89837 * 2 1 4 4 C 1.40824 * 119.80547 * 180.02562 * 3 2 1 5 5 C 1.41211 * 120.17956 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99696 * 331.66283 * 5 4 3 7 7 C 1.39893 * 120.00464 * 151.66756 * 5 4 3 8 8 N 1.30871 * 120.00363 * 164.73796 * 7 5 4 9 9 Si 1.86804 * 119.99633 * 344.74345 * 7 5 4 10 10 H 1.48496 * 109.47185 * 95.31863 * 9 7 5 11 11 H 1.48503 * 109.46811 * 215.31972 * 9 7 5 12 12 H 1.48500 * 109.46978 * 335.31507 * 9 7 5 13 13 C 1.40854 * 119.64165 * 359.97438 * 4 3 2 14 14 C 1.36421 * 119.81060 * 359.72482 * 13 4 3 15 15 C 1.39284 * 119.90889 * 179.97438 * 2 1 3 16 16 O 1.35671 * 119.81812 * 359.97438 * 15 2 1 17 17 C 1.42907 * 116.99965 * 185.63994 * 16 15 2 18 18 C 1.54887 * 110.48660 * 270.88177 * 17 16 15 19 19 C 1.54890 * 102.74757 * 203.37569 * 18 17 16 20 20 C 1.54265 * 104.19397 * 37.94807 * 19 18 17 21 21 C 1.53877 * 106.59961 * 336.38515 * 20 19 18 22 22 H 1.09001 * 109.47351 * 270.01868 * 1 2 3 23 23 H 1.08998 * 109.47505 * 30.02167 * 1 2 3 24 24 H 1.09000 * 109.46859 * 150.02103 * 1 2 3 25 25 H 1.07993 * 120.10439 * 359.97438 * 3 2 1 26 26 H 0.97005 * 120.00549 * 180.02562 * 8 7 5 27 27 H 1.07999 * 120.09306 * 180.02562 * 13 4 3 28 28 H 1.07999 * 119.90554 * 180.27357 * 14 13 4 29 29 H 1.09004 * 110.53362 * 33.49687 * 17 16 15 30 30 H 1.09000 * 110.75133 * 85.06396 * 18 17 16 31 31 H 1.09001 * 110.75847 * 321.69402 * 18 17 16 32 32 H 1.08993 * 110.48978 * 279.26491 * 19 18 17 33 33 H 1.09003 * 110.48344 * 156.62090 * 19 18 17 34 34 H 1.08995 * 110.03508 * 95.67031 * 20 19 18 35 35 H 1.09006 * 110.03117 * 217.05668 * 20 19 18 36 36 H 1.08999 * 110.03276 * 119.28558 * 21 20 19 37 37 H 1.08998 * 110.03573 * 240.67184 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1829 0.0000 4 6 3.5954 1.1807 -0.0005 5 6 4.3073 2.4002 -0.0011 6 1 3.8683 3.2815 -0.4451 7 6 5.5811 2.4670 0.5733 8 7 6.3608 3.4870 0.3197 9 14 6.1692 1.0999 1.7024 10 1 6.9681 0.1218 0.9210 11 1 7.0107 1.6768 2.7814 12 1 4.9964 0.4144 2.3023 13 6 4.2901 -0.0447 -0.0005 14 6 3.5948 -1.2184 0.0057 15 6 2.2015 -1.2073 0.0005 16 8 1.5176 -2.3790 0.0016 17 6 2.2849 -3.5781 0.1272 18 6 2.7173 -4.0936 -1.2678 19 6 2.9607 -5.6021 -1.0144 20 6 1.8460 -6.0044 -0.0268 21 6 1.4163 -4.7175 0.6991 22 1 -0.3634 0.0003 1.0277 23 1 -0.3634 0.8897 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6473 2.1182 -0.0004 26 1 7.2442 3.5332 0.7177 27 1 5.3700 -0.0549 -0.0005 28 1 4.1259 -2.1588 0.0102 29 1 3.1571 -3.4094 0.7589 30 1 3.6350 -3.6036 -1.5933 31 1 1.9207 -3.9481 -1.9975 32 1 3.9420 -5.7604 -0.5672 33 1 2.8685 -6.1648 -1.9434 34 1 1.0006 -6.4268 -0.5698 35 1 2.2278 -6.7296 0.6920 36 1 0.3624 -4.5153 0.5084 37 1 1.5890 -4.8177 1.7707 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687815336.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:31 Heat of formation + Delta-G solvation = -54.436278 kcal Electronic energy + Delta-G solvation = -17749.690923 eV Core-core repulsion = 15069.357769 eV Total energy + Delta-G solvation = -2680.333154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.05227 -39.10989 -37.10826 -35.36164 -33.55864 -31.60756 -29.65316 -28.92904 -27.90535 -26.29367 -23.24315 -22.34008 -21.48847 -20.83131 -19.21190 -18.91601 -17.38585 -16.74234 -16.34713 -15.92954 -15.52613 -15.44371 -14.58950 -14.53464 -14.34553 -14.15286 -13.97783 -13.52129 -13.43228 -13.06621 -12.93324 -12.59083 -12.29887 -12.13016 -12.10015 -11.98654 -11.81239 -11.69448 -11.45901 -11.26224 -11.14199 -10.88110 -9.53879 -8.91052 -8.87141 -6.39378 0.72911 0.77923 1.22407 1.37042 1.45836 2.10583 2.53528 2.60958 3.44279 3.62858 3.69406 3.95793 4.09389 4.13419 4.29252 4.48554 4.51316 4.56748 4.60762 4.64905 4.76630 4.85730 4.90923 4.92503 4.99811 5.05761 5.06692 5.16143 5.18761 5.25811 5.33278 5.38746 5.44757 5.67659 5.78410 5.88238 6.15218 6.31565 6.60316 6.80921 6.96368 8.22068 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.006623 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.852512 B = 4226.587725 C = 4906.665729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.086 4.086 3 C -0.185 4.185 4 C 0.048 3.952 5 C -0.482 4.482 6 H 0.056 0.944 7 C 0.045 3.955 8 N -0.857 5.857 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.254 1.254 13 C -0.222 4.222 14 C -0.158 4.158 15 C 0.016 3.984 16 O -0.317 6.317 17 C 0.068 3.932 18 C -0.148 4.148 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.117 4.117 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.292 0.708 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 -17.563 0.966 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.205 4.205 4 C 0.046 3.954 5 C -0.512 4.512 6 H 0.075 0.925 7 C -0.168 4.168 8 N -0.485 5.485 9 Si 0.789 3.211 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.178 1.178 13 C -0.241 4.241 14 C -0.176 4.176 15 C -0.028 4.028 16 O -0.232 6.232 17 C 0.011 3.989 18 C -0.186 4.186 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.154 4.154 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.766 -17.408 0.959 18.701 hybrid contribution 0.996 0.405 0.232 1.100 sum -5.770 -17.002 1.192 17.994 Atomic orbital electron populations 1.20548 0.89577 1.02468 1.02249 1.19078 0.96984 0.90117 1.02437 1.20733 0.93253 0.96580 1.09887 1.17847 0.92963 0.92567 0.92034 1.19369 1.00257 0.96345 1.35218 0.92549 1.26754 0.95179 0.98378 0.96475 1.69724 1.09192 1.31609 1.37967 0.85514 0.78896 0.78285 0.78386 1.18671 1.20590 1.17760 1.20656 0.98142 0.92911 1.12378 1.20758 0.93383 0.98015 1.05465 1.18515 0.89767 0.85584 1.08917 1.85886 1.35798 1.12080 1.89467 1.23468 0.94754 0.83415 0.97262 1.23009 1.01261 0.97507 0.96799 1.22283 0.99365 0.93638 1.00307 1.22078 0.98819 0.96049 0.98265 1.22175 1.00130 0.92797 1.00327 0.91137 0.91303 0.91330 0.86957 0.89790 0.88449 0.85576 0.91659 0.92324 0.91095 0.90938 0.89929 0.90418 0.89921 0.90772 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.02 9.78 71.24 0.70 -2.33 16 2 C -0.09 -3.61 5.86 -20.03 -0.12 -3.73 16 3 C -0.19 -8.81 9.38 22.49 0.21 -8.60 16 4 C 0.05 2.54 5.18 -21.28 -0.11 2.43 16 5 C -0.48 -27.82 9.59 23.40 0.22 -27.60 16 6 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 7 C 0.05 2.49 5.45 85.24 0.46 2.96 16 8 N -0.86 -48.38 13.93 21.82 0.30 -48.07 16 9 Si 0.96 44.24 24.39 68.60 1.67 45.92 16 10 H -0.26 -11.30 6.73 99.48 0.67 -10.63 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.25 -11.91 6.62 99.48 0.66 -11.25 16 13 C -0.22 -10.87 6.95 22.49 0.16 -10.72 16 14 C -0.16 -6.79 8.76 22.11 0.19 -6.59 16 15 C 0.02 0.68 6.66 22.79 0.15 0.83 16 16 O -0.32 -11.27 8.87 -89.88 -0.80 -12.07 16 17 C 0.07 1.91 2.68 31.67 0.08 1.99 16 18 C -0.15 -3.71 6.37 31.88 0.20 -3.50 16 19 C -0.12 -2.11 6.83 31.67 0.22 -1.90 16 20 C -0.11 -1.84 6.80 31.32 0.21 -1.62 16 21 C -0.12 -2.49 6.56 31.32 0.21 -2.28 16 22 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 24 H 0.07 2.13 7.52 -2.39 -0.02 2.11 16 25 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 26 H 0.29 14.81 8.30 -92.70 -0.77 14.04 16 27 H 0.10 4.75 4.30 -2.91 -0.01 4.74 16 28 H 0.13 4.70 5.44 -2.91 -0.02 4.68 16 29 H 0.07 1.93 6.25 -2.39 -0.01 1.92 16 30 H 0.06 1.59 7.58 -2.39 -0.02 1.57 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.07 1.62 8.07 -2.39 -0.02 1.60 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -61.81 293.11 4.94 -56.87 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.96 Total: 18.00 kcal Atomic # 6 Polarization: -63.44 SS G_CDS: 2.79 Total: -60.64 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.30 Total: -48.07 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.80 Total: -12.07 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.67 Total: 45.92 kcal Total: -61.81 4.94 -56.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687815336.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.432 kcal (2) G-P(sol) polarization free energy of solvation -61.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds