Wall clock time and date at job start Mon Mar 30 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35699 * 116.99903 * 2 1 4 4 C 1.38450 * 120.18304 * 0.02562 * 3 2 1 5 5 C 1.38251 * 120.15266 * 180.02562 * 4 3 2 6 6 C 1.38715 * 120.52552 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.81761 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47214 * 299.98433 * 7 6 5 9 9 C 1.53000 * 109.46686 * 59.97866 * 7 6 5 10 10 C 1.37606 * 120.37077 * 359.95679 * 6 5 4 11 11 C 1.40413 * 119.82843 * 0.27802 * 10 6 5 12 12 C 1.41836 * 120.25439 * 179.74530 * 11 10 6 13 13 C 1.38293 * 120.00208 * 34.25542 * 12 11 10 14 14 C 1.38778 * 119.99896 * 7.08721 * 13 12 11 15 15 H 1.08000 * 119.99609 * 10.66877 * 14 13 12 16 16 C 1.40591 * 120.00006 * 190.67439 * 14 13 12 17 17 N 1.30582 * 120.00185 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00085 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47086 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47257 * 119.99587 * 18 16 14 21 21 H 1.48503 * 109.47357 * 240.00227 * 18 16 14 22 22 H 1.08992 * 109.46870 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46874 * 300.00092 * 1 2 3 24 24 H 1.09000 * 109.46795 * 59.99840 * 1 2 3 25 25 H 1.08000 * 119.92253 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.73905 * 179.97438 * 5 4 3 27 27 H 1.08997 * 109.47047 * 179.97438 * 7 6 5 28 28 H 1.08997 * 109.47669 * 59.99701 * 8 7 6 29 29 H 1.09006 * 109.47152 * 179.97438 * 8 7 6 30 30 H 1.09006 * 109.47200 * 299.99584 * 8 7 6 31 31 H 1.09005 * 109.47340 * 60.00345 * 9 7 6 32 32 H 1.08999 * 109.47441 * 180.02562 * 9 7 6 33 33 H 1.08997 * 109.47689 * 300.00097 * 9 7 6 34 34 H 1.07997 * 120.08713 * 179.97438 * 10 6 5 35 35 H 1.08001 * 120.00440 * 214.25548 * 12 11 10 36 36 H 1.07997 * 120.00458 * 187.08741 * 13 12 11 37 37 H 0.97007 * 120.00111 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2947 2.3726 0.0005 5 6 1.9230 3.6041 0.0000 6 6 3.3076 3.6887 -0.0016 7 6 3.9758 5.0395 -0.0028 8 6 3.5544 5.8160 -1.2519 9 6 3.5564 5.8169 1.2465 10 6 4.0744 2.5461 -0.0018 11 6 3.4522 1.2874 -0.0063 12 6 4.2338 0.1039 -0.0120 13 6 5.4416 0.0696 0.6607 14 6 5.8206 1.1380 1.4612 15 1 5.1083 1.9144 1.6982 16 6 7.1318 1.2098 1.9634 17 7 7.9929 0.2708 1.6771 18 14 7.6422 2.6483 3.0402 19 1 6.4906 3.5699 3.2136 20 1 8.0768 2.1435 4.3674 21 1 8.7648 3.3757 2.3953 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2161 2.3181 0.0005 26 1 1.3311 4.5075 0.0000 27 1 5.0580 4.9095 -0.0035 28 1 2.4722 5.9460 -1.2511 29 1 4.0374 6.7932 -1.2525 30 1 3.8531 5.2621 -2.1420 31 1 3.8567 5.2638 2.1365 32 1 4.0393 6.7941 1.2456 33 1 2.4742 5.9470 1.2474 34 1 5.1520 2.6173 -0.0035 35 1 3.8858 -0.7706 -0.5416 36 1 6.0900 -0.7886 0.5632 37 1 8.8975 0.3202 2.0239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714558418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:02 Heat of formation + Delta-G solvation = -26.968780 kcal Electronic energy + Delta-G solvation = -17767.774619 eV Core-core repulsion = 15088.632545 eV Total energy + Delta-G solvation = -2679.142074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.23052 -37.23007 -35.13698 -33.83755 -32.02556 -28.67369 -28.60005 -26.75658 -26.43859 -25.25966 -22.31339 -21.48738 -19.77238 -18.35724 -17.51650 -16.25075 -15.50881 -15.12057 -14.92732 -14.43355 -13.78361 -13.58406 -13.35176 -12.98559 -12.82600 -12.39230 -12.09211 -11.94986 -11.70371 -11.50679 -11.38006 -11.16894 -10.92746 -10.81222 -10.63139 -10.19403 -10.18828 -9.95744 -9.84190 -9.70123 -9.13015 -8.38334 -7.44851 -7.09505 -6.75579 -4.29387 2.26776 2.51355 2.88228 2.97295 3.05677 3.74144 3.78754 4.19622 4.81065 5.31236 5.35307 5.38987 5.53626 5.60753 5.69129 5.73730 5.86966 5.93939 5.94760 6.05871 6.16030 6.26209 6.35352 6.44241 6.63002 6.65567 6.82096 6.88426 6.93946 7.07009 7.31447 7.37423 7.63060 7.65989 7.92691 8.05523 8.18643 8.41269 8.62441 8.86803 9.04699 9.90933 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.009448 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.232306 B = 2962.755319 C = 4339.569359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.051 3.949 4 C -0.193 4.193 5 C -0.156 4.156 6 C -0.099 4.099 7 C -0.052 4.052 8 C -0.138 4.138 9 C -0.140 4.140 10 C -0.128 4.128 11 C 0.052 3.948 12 C -0.402 4.402 13 C 0.073 3.927 14 C -0.426 4.426 15 H 0.097 0.903 16 C 0.070 3.930 17 N -0.789 5.789 18 Si 0.910 3.090 19 H -0.251 1.251 20 H -0.270 1.270 21 H -0.269 1.269 22 H 0.086 0.914 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 6.952 -0.820 9.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.224 6.224 3 C 0.007 3.993 4 C -0.212 4.212 5 C -0.175 4.175 6 C -0.100 4.100 7 C -0.070 4.070 8 C -0.196 4.196 9 C -0.197 4.197 10 C -0.146 4.146 11 C 0.051 3.949 12 C -0.423 4.423 13 C 0.051 3.949 14 C -0.453 4.453 15 H 0.115 0.885 16 C -0.152 4.152 17 N -0.412 5.412 18 Si 0.733 3.267 19 H -0.174 1.174 20 H -0.195 1.195 21 H -0.193 1.193 22 H 0.104 0.896 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.913 6.671 -0.774 8.948 hybrid contribution -0.044 0.575 0.519 0.775 sum -5.957 7.245 -0.255 9.383 Atomic orbital electron populations 1.22814 0.81067 1.02288 1.00169 1.86029 1.18821 1.27880 1.89674 1.19366 0.92438 0.82993 1.04552 1.20760 0.98019 0.92802 1.09632 1.20190 0.93685 0.95481 1.08131 1.19450 0.93249 0.93941 1.03313 1.20002 0.99704 0.92657 0.94673 1.21815 1.00991 0.98926 0.97825 1.21826 1.00971 0.98956 0.97987 1.21385 1.00192 0.90180 1.02829 1.17321 0.88080 0.94404 0.95063 1.19942 1.02358 0.97625 1.22384 1.20536 0.91243 0.94930 0.88164 1.20200 0.95222 1.08254 1.21582 0.88533 1.26440 0.96943 0.97031 0.94760 1.69534 1.05569 1.30919 1.35187 0.86191 0.79890 0.81090 0.79541 1.17396 1.19472 1.19350 0.89575 0.93809 0.93920 0.87830 0.88309 0.90964 0.92941 0.93395 0.92736 0.92629 0.93386 0.92917 0.84703 0.90197 0.89764 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 16 2 O -0.31 -6.67 9.89 -18.80 -0.19 -6.86 16 3 C 0.05 1.15 6.71 -38.49 -0.26 0.89 16 4 C -0.19 -3.85 9.03 -39.50 -0.36 -4.21 16 5 C -0.16 -3.00 8.70 -39.40 -0.34 -3.34 16 6 C -0.10 -1.99 4.78 -104.67 -0.50 -2.49 16 7 C -0.05 -0.87 3.09 -91.77 -0.28 -1.15 16 8 C -0.14 -1.98 9.00 37.15 0.33 -1.64 16 9 C -0.14 -2.10 9.00 37.16 0.33 -1.77 16 10 C -0.13 -2.95 7.00 -38.99 -0.27 -3.22 16 11 C 0.05 1.29 5.29 -106.69 -0.56 0.73 16 12 C -0.40 -10.56 9.33 -38.19 -0.36 -10.92 16 13 C 0.07 1.94 9.35 -39.36 -0.37 1.57 16 14 C -0.43 -10.96 6.80 -38.50 -0.26 -11.23 16 15 H 0.10 2.50 5.21 -52.49 -0.27 2.23 16 16 C 0.07 1.68 5.51 -17.20 -0.09 1.59 16 17 N -0.79 -19.48 12.88 55.58 0.72 -18.77 16 18 Si 0.91 18.08 29.57 -169.99 -5.03 13.05 16 19 H -0.25 -5.00 7.11 56.52 0.40 -4.60 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.04 0.62 7.66 -51.93 -0.40 0.23 16 24 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 25 H 0.10 1.77 6.29 -52.49 -0.33 1.44 16 26 H 0.10 1.66 7.06 -52.48 -0.37 1.28 16 27 H 0.07 1.24 7.86 -51.93 -0.41 0.83 16 28 H 0.05 0.72 7.37 -51.93 -0.38 0.33 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.75 7.37 -51.93 -0.38 0.36 16 34 H 0.14 3.22 5.90 -52.49 -0.31 2.91 16 35 H 0.08 2.11 7.99 -52.49 -0.42 1.69 16 36 H 0.08 2.29 7.45 -52.49 -0.39 1.90 16 37 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 LS Contribution 303.87 15.07 4.58 4.58 Total: -1.00 -27.39 303.87 -7.23 -34.62 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.31 Total: 7.08 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: -2.00 Total: -33.70 kcal Atomic # 7 Polarization: -19.48 SS G_CDS: 0.72 Total: -18.77 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.19 Total: -6.86 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.39 -7.23 -34.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714558418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.648 kcal (2) G-P(sol) polarization free energy of solvation -27.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds